KEGG   Polypterus senegalus (gray bichir): 120524067
Entry
120524067         CDS       T08668                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex04510  Focal adhesion
psex04512  ECM-receptor interaction
psex04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:psex00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120524067 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120524067 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120524067 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:psex04147]
    120524067 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:psex00536]
    120524067 (col4a1)
Exosome [BR:psex04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   120524067 (col4a1)
Glycosaminoglycan binding proteins [BR:psex00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120524067 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 120524067
NCBI-ProteinID: XP_039601850
LinkDB
Position
2:311636488..311894277
AA seq 1663 aa
MLPLRRHAAVWLLLVVVARGLNEATAKGCAGCGNCDCSGVKGDKGERGLPGLQGPMGFPG
MQGPEGPMGPMGFKGDFGEPGPAGLKGIRGPPGLPGFPGTPGLPGIPGQDGPPGPSGIPG
CNGTKGERGYDGAPGLPGPQGPMGIPGIPGIKGDPGEVIGQIPFKGEKGFPGVPGLPGRP
GLQGIQGPVGPPGPEGYPGPPGPPGPPGEKGNRPSFQGAKGDRGDPGPRGPPGPPYPEVA
GPTTVTLFPGPKGDKGDFGPKGEKGNQGLPGFTTKGNKGEPGPQGPRGKPGKDGEPGIPG
IPAQKGEPGFPGFPGSNGEKGEKGEVGPAGPPGSVITESGEVSGEKGDSGPPGRPGIPGL
KGEKGTPGPQGPTGLPGRDLEGPAGPPGFPGETGQKGEKGYPGINLQGPKGQDGLPGFPG
EPGPPGLPGDTICEVVGPPGQPGYQGERGQKGDKGDTCFDCAAEGPPGLPGQQGPPGPQG
YPGSPGIKGEKGSPGTLGLQGLPGPPGIRGLIGYPGAKGEPGELFFSPDLKGSKGDQGLP
GFPGTTGQTGSPGRDGIPGLPGEKGEPATIGFKGDRGSDGDPGLKGIKGERGPPGLPGHT
LPGVPGEKGNQGVPGRPGLPGTPGPKGERGETVPMPGPRGLPGSPGTPGIQGLPGDVGPP
GFPGNPGSPGLKGDQGFPGIGFPGEPGPKGHQGMPGSPGQPGVQGQPGLEGVPGRPGPPG
QKGDPGVGLPGPRGFPGSPGAQGFPGDKGSEGLPGIPGKDGLTGLPGFQGIKGDLGFPGP
QGPPGPPGLAGIGEPGLPGPQGPPGLPGPIGQQGPKGNTGLPGLPGLEMPGPPGEKGAQG
IPGPPGYQGLPGLQGTPGREGQPGSSGLKGDMGDMGMPGKNGAPGFTGDPGAPGQRGDPG
PPGLRGVPGDFGPKGEPGEKGIQGPAGYMNATQMMHYKGEKGDHGDSGGTGPTGEKGYQG
IIGDPGVPGKDGQPGAPGKPGPKGDSGAPGLPGHQGVKGTKGTMGPMGIPGSDGLKGDKG
FQGTPGIPGFPGTTGDKGERGDPGPEGIGYPGSKGEKGEIGLPGFPGEVGIKGEKGTPGV
HGMPGKEGLKGDIGLPGYPGSPGPQGEKGITGLPGQPGLPGQPGRPGEPGLQGTPGIPGA
KGQPGQDGIPGPSGEKGDQGLAGRGFPGASGAKGEKGLKGEPGLPGRPGSPGVPGIKGDH
GVPGLKGQQGFPGHQGQPGIPMPGPKGERGQPGSPGVQGLPGLPGLPGLAGDAGSKGDKG
NPGYPGQPGPQGIKGDRGSPGIIGNQGLPGLNGQKGEQGLQGVPGFPGPKGFSGPVGYKG
ETGDRGFTGSKGAVGPPGPPGPTVIIKGDIGLPGPQGPQGLPGSQGYPGLKGAQGVPGAS
GRPGEDGIPGFDGLPGAKGEPGPVGPIGPRGNQGLPGPDGPPGPGGPPGPSSIAHGFLVT
RHSQTIEVPECPFGTARIYDGYSLLYVQGNERAHGQDLGTAGSCLRKFSPMPFLFCNINN
VCNFASRNDYSYWLSSPEPMPMNMAPITGENIKPFISRCSVCEAPAMVIAVHSQTIQIPP
CPSGWDSLWIGYSFVMHTSAGSEGSGQALASPGSCLEEFRSAPFIECHGRGTCNFYANSY
SFWLATIDNGDMFRKPNPATLKAGDLRTHVSRCHVCMKRMKGT
NT seq 4992 nt   +upstreamnt  +downstreamnt
atgctgccgctccgccgacatgcggctgtctggctgctgctggtggtggtcgcgaggggc
ttgaacgaagctacggctaagggatgtgctggctgtggaaactgtgactgtagcggtgtg
aaaggagacaagggtgaaagaggtttacctggcttgcaaggtccaatgggatttcctgga
atgcaaggtccagaaggacccatggggccaatgggttttaagggtgattttggagagcca
ggtcctgcaggtctgaaaggtattaggggtcctccaggattacccggattcccaggaacc
ccaggccttccaggtatccccggtcaagatggtccacctggtccatcaggaattccagga
tgtaatggcacaaagggtgagagaggttatgacggagcacctggattacctggaccccaa
ggcccaatgggtatcccaggaattcctggaataaagggtgatccaggagaagtcattggg
caaatcccatttaaaggtgaaaagggctttccaggagtgccaggattaccaggtcgacct
ggtctgcaaggaatccaaggacctgttggtccaccaggacctgaaggatatccaggtcct
cctggtccacctggccctccaggagaaaagggcaacagaccttccttccagggtgcaaaa
ggtgacagaggagatccaggacctcgtggccctcctggcccaccataccctgaggtggct
ggtccaactacagtcacattatttccaggaccaaagggtgataaaggagattttggtcca
aaaggagaaaagggtaatcaaggactcccaggctttaccactaaaggcaacaaaggtgaa
cctggtcctcaaggaccaagaggaaaaccaggtaaagatggagaaccaggaataccagga
ataccagcacaaaagggtgaaccaggatttcctggttttccaggatcaaatggagaaaag
ggtgagaaaggggaagttggaccagctggacctcctggaagcgtaattactgaaagtggt
gaagtaagtggtgaaaaaggggacagtggtcccccgggaaggccaggtataccaggattg
aaaggagaaaaaggcactcctggccctcagggacctacaggtctcccaggtcgagatctg
gaaggacccgctggtcctcctggatttcctggagaaacaggacagaaaggagaaaaaggc
taccctggaataaatttacaagggcctaaaggtcaagatggacttcctggttttccagga
gaacccggacctccaggtcttccaggtgatactatttgtgaagttgtaggccctcctggc
caaccaggatatcaaggagaaagaggacagaaaggtgacaaaggagatacctgctttgac
tgtgcggccgaagggccccctggtcttcctggacaacaaggccctcctggtccacaagga
tatccagggtcaccaggcattaaaggagaaaaaggctctcctggaactttaggccttcaa
ggtcttcccggtcctccaggtattcgaggtttgattggatacccaggagcaaagggtgaa
cctggagaactcttctttagtccagaccttaaaggcagcaaaggggatcaaggtttacct
ggttttcctggaactacaggtcaaacaggaagtcctggaagagatggtatacctggatta
cctggagaaaaaggggaaccagccactattggattcaaaggagatcgaggttccgatgga
gatccaggtttaaaaggaattaaaggagagaggggtcctcctggtcttccaggacacact
ttgcctggcgtgccaggggaaaaaggaaatcaaggagtacctggaagacctggcttacct
ggcacacctggacccaagggtgaacgtggtgaaactgttcctatgcctggacctagagga
cttcctggatcacctggaaccccaggaatacaaggcctaccaggtgacgttggccctccg
ggattccctggcaatccaggatctccaggacttaaaggtgaccaaggtttcccaggaata
gggtttccaggtgaacctggcccgaaaggtcatcaaggcatgccagggtctcctggacag
ccgggtgttcaaggacagcctggtctggaaggtgtaccaggaaggccaggtccacctggg
caaaagggtgatcctggtgttggtcttcctggacccagaggatttccaggctcccctgga
gcacaaggatttcctggagataaaggaagtgaaggacttcctggaattccagggaaagat
ggtttaactggtctcccagggtttcagggtattaaaggtgatcttgggtttcctggaccc
cagggtcctcctggaccccctggtcttgctgggataggtgagcctggtctacctggtcct
caaggtccacctggcttacctggccccattggacaacaaggcccaaaaggtaacactggc
ttaccaggcttacctggtcttgaaatgccaggaccaccaggtgaaaaaggagcacaaggg
atccccggacctccaggatatcagggtcttcctggattgcaaggtactccaggaagagaa
ggtcaacctggaagttcagggctcaaaggagacatgggagatatgggaatgccaggtaaa
aatggtgccccaggatttactggtgatccaggtgccccaggacaaagaggggatccaggt
cctcctggtcttaggggagttcctggtgattttggaccgaaaggagaaccaggtgagaaa
ggcattcaaggccctgctggctacatgaatgccactcagatgatgcattacaaaggagaa
aaaggagatcatggagactcaggtggtacagggcctacaggagaaaagggatatcaagga
ataattggtgaccctggagtgccaggaaaagatggacaacctggagccccaggcaagcca
ggacccaaaggtgattcgggggctcctgggttaccaggacatcaaggtgttaaaggaact
aaaggaacgatgggtccaatgggcattccaggttccgatggattaaaaggtgacaaaggt
ttccaaggtactccaggtattccaggatttcctggtaccactggcgataaaggggaaaga
ggagatccaggacctgaaggaattggatatccaggatctaaaggtgaaaagggtgaaata
ggtcttcctggttttcctggtgaagtgggcattaaaggagaaaaaggaacccctggtgtc
catggcatgcctggaaaggagggtctgaaaggagacatcggtcttcccggatatccaggt
agcccaggacctcaaggtgaaaaaggaattacaggattacccggacaaccaggtctgccc
ggccaaccaggaaggccaggtgaaccaggtcttcagggcactcctggcattcctggagct
aaaggccaacctggtcaagatggaatccctggaccatctggagagaagggagaccaaggt
ttagcaggacgaggatttccaggagcatcaggagcaaaaggagaaaaaggcctcaaagga
gaacctggccttcctggcagacctggcagccctggagtaccaggtattaaaggagatcat
ggagttccaggacttaaaggacagcaaggtttccctggccatcaaggtcaaccaggcata
ccaatgccagggccaaaaggtgaacgtgggcaaccaggaagccccggagttcaaggtcta
ccagggttgccagggttgcctggactggcaggagatgctggaagtaaaggggataaggga
aatccaggctatcctgggcaaccagggcctcaaggaataaagggagatcgaggttctcct
ggaattattggcaatcaaggtctgccaggtttgaatggacaaaagggcgaacaaggacta
cagggtgttccagggttcccagggccaaaaggcttttcaggaccagttggatacaaaggg
gagacgggagatcgtggctttactggatctaaaggtgctgttggtcccccagggccacct
ggaccaactgttattattaaaggtgacattggtctgcctggtcctcagggcccacaaggt
ctaccaggatcgcaaggttatccaggtcttaaaggagcacaaggtgtgcctggagccagt
ggtcgaccaggagaggatggaatccctggatttgatgggctacctggagctaaaggagaa
cctggaccagtaggccccatagggccaagaggaaatcaaggtctaccagggcctgatgga
cccccaggcccaggaggaccacctggaccttcatctatagcacatggcttcttagttaca
agacacagtcagacaatagaagtgccagaatgtccatttggaacagctcgcatatatgat
ggctactctctactgtatgtgcaaggcaatgaaagagcacatggtcaggatcttggtact
gctggaagctgcctccgcaagtttagtccaatgccatttttgttctgcaacattaacaat
gtttgcaactttgcatcaagaaatgactactcatattggctatcatctccggaaccaatg
ccaatgaatatggcaccaataactggtgaaaacatcaagccatttatcagcaggtgctca
gtctgtgaagccccagccatggtgattgctgtgcacagtcagactatccaaattcctcca
tgtccatctggctgggattccttgtggattggatactcctttgttatgcacactagtgcc
ggttcggagggttcgggacaagctttagcctctcctggctcctgtctggaagagttccgc
agtgctccctttattgaatgccatggccgtgggacatgcaacttctatgcaaattcttac
agcttctggcttgcaactattgacaacggtgacatgttcaggaagcccaacccagcaaca
ctgaaagccggagacttaagaactcacgtaagccgatgccatgtatgcatgaagagaatg
aagggaacataa

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