Polypterus senegalus (gray bichir): 120524248
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Entry
120524248 CDS
T08668
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
120524248 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psex03036
]
120524248 (chd8)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120524248 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_Hrp3
MUN
DraK_HK_N
SWI2_SNF2
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
120524248
NCBI-ProteinID:
XP_039602043
LinkDB
All DBs
Position
1:35305068..35458839
Genome browser
AA seq
2538 aa
AA seq
DB search
MADPMMDILDFNLDSLSEDNIFQTSNDPIEDALQMTFGQVMTPSTSLSTEQVNIVSSPQL
TTSQVQILSGQDQLDDQKKSQPTILQTTCPSTGVAAVNVKDQPPVLIGSPVAGPAVTSSV
PTVVGMPGTITTLPATSNQTTPKFFILKTPTSSSIATSQQPVQLATTSSNGGKVTFAKVL
TGTPLRPGMSIVSGGTVLTTTTAGGAKTGVAVASSGGTGVQRVVQTSNGPLKQVLLQAIP
AQQQVTQQPQGQAQGTSGGIKAPGVTLTSVPQQGESKRITLLLQQPSQGGTVASASGGHR
LILGNLPGKIVLQGNQLAALTQAKNNAQVAGGQPKVVTLQLQVQQQTSNSQPTKLQLVSQ
SPSSGQPQVLQLGQSQVQGQRLAVPLKLLLQPQAGSSQGSVSVVKVVNPSEAVNVSTTSG
SQVLTSSQAKGAESRRLEHQRKQEKANRIVAEAIARAKARGEQNIPRVLNQDELPCVTAG
GALGSLGDECGGSASKKKISKKKIDKEESKLGIKKAKAPCGAAKSKGKAKANTITPVASK
KRKRNGSSDNTDEELTPPPSPRGEDDESNFQKRRSNRQVKRKKYTEDLDIKITDDEEEED
VDVIGPVKQPDMGAAPTTTMQFFVENPSEEDAAIVDKVLSLRHTKKEISPGHYVTIEEFF
VKYKNYSYLHCEWATLEQLERDKRIAQKVKRFKTKMAQMRHIFNEDEEPFNPDYIEIDRI
LDESHSVDKDNGEPLIYYLVKWCSLPYEDSTWELKEDVDDSKILEFHRIQSRKPNLKRVP
RPLASSWKKLELSREYKNGNCLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITL
LQEIYSAGLHGPFLVIAPLSTIVNWEREFATWTDMNTIVYHGSLASRQMIQQYEMYCKDD
DGHLIPGAYKFDALITTFEMVLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLRHMDL
EHKILLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAILKPMM
LRRLKEDVEKNLAPKQETIIEVELTIIQKKYYRAILEKNFTFLTKGAGQTNNVPNLLNTM
MELRKCCNHPYLINGAEEKIISELREVYDPLAPDFHLNAMVRSAGKLVLIDKLLPKLKVG
GHKVLIFSQMVRCLDILEDYLIQKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC
TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKEVKVYRLITRNSYEREMF
DKASLKLGLDKAVLQSMSGKENSVNGIQQFSKKEIEDLLRKGAYAAIMDEEDEGNKFCEE
DIDQILQRRTTTITIESEGKGSTFAKASFVASENRSDISLDDPNFWQKWAKKADIDFDSV
NRKNTLVIDTPRIRKQTRQFSSLKDEDIVEFSDFDSEEDEKPRSRRHDRHHGYGRTDCFR
VEKHLLVYGWGRWKDILTHGRFKRRMTERDMETICRAILVYCLLHYKGDENIKGFIWDLI
SPAENGRTKELQNHSGLSIPVPRGRKGKKVKAQSTFDMHKADWIRKYNPDSLFVDDSYKK
HLKHQCNKVLLRVRMLYYLKQEVIGDQAEKVLSGVYASEIDIGFPEVDQLELPARWWDSE
ADKSLLIGVFKHGYEKYNTMRADPALCFLERVGRPDEKAIVAEQRAGDNFADLGEGTDFD
KYTEDPEYKPLQGITKEQDDESESPLPDEEISVVDGEEGQISQPGLVHWPTGSSLTARLR
RLITAYQRSYRKEQLKIEAAEKGDRRRRRCEASYKLKEIARREKQQKWTRREESEFYRVV
STFGVEIDPESGLFDWRRFRTFARLDKKTDESLVRYYHAFLVMCRRVCHLPQPVAEVPPD
ISLSVAPITEERASRTLYRIDLLRKIREQVLRHPLLDERLNSVVQPSPELPDWWRCPQHD
RELLIGAARYGVSRTDQTILPDPVFTFHQARLAYLHQNRASQSRSSTPLLLQQQNACSSN
SASPLPDISRGWSLEAEQEGLSTPDSQRERARPPRPAEQPLFPLIGGISGSYSGISGNNL
PPRSLFDKEKERWDCKQGENGDSDSDSDKEDCSSSSTSTNNSGSSDDSDTEKEDKIGKEP
KLFDQDEENSLMSLATSQDELMGDLSVERTALKMLQDKLCEWPKDRVLINRLDMLCTAVL
IGSWADIRRCNLGASVLQHDSGSLLLADDHPSPLCDISPSSPQCNRLVRRNHQDDPEFTV
RLRHDEGLKLTFQKQCLMLPNGTRNERGVKKRRCHNVEGDDTPQASPFSNPESRVPVIHS
LTRSVLVGLDAPKRCELSDWLKEHPEYEVEPQALAFLAGAHKKKRHKPKKVEKLDPDTLT
GLERVQLVNLRSGRKLGGAFAPSLKGLRQCLEENPDYVVSPSWAELVQNSGYLPESMHHR
ILFEEIKTDNRRPKQLQQSHSNHRSMVKLEPTFTPVLQEQPLLSSSHNTATYLGSCYTEL
DRNHHQHHSIHSDDASSVFPGQLSPGYDVKMETELESGGMEFDYSDNSHLSLAYSDRDFS
YLGDPMMPNNSDSSEDGD
NT seq
7617 nt
NT seq
+upstream
nt +downstream
nt
atggcagatccaatgatggatattttagatttcaatcttgactccctttctgaggacaac
atttttcaaaccagcaatgacccaattgaagatgccttgcagatgacatttggtcaggtg
atgacaccttccacttccctgtcaactgagcaagtaaacatagtatcatccccccaactg
accacctcacaagtacagatcctgtctggtcaagatcagcttgatgaccagaagaaatcc
caaccgaccattctgcagacaacttgcccttcaactggtgttgctgctgtcaatgtaaag
gaccaacctcctgtgttaataggatcacctgttgcagggcctgctgtgacttcatctgtg
cccactgtggtcgggatgccgggcaccatcaccacattgccagctacttctaaccagaca
actccaaaatttttcatccttaaaactccaacaagttcctcaatagcaacttctcagcaa
cctgtgcagttggctaccactagcagcaatgggggcaaagtaacttttgcaaaagttttg
actggaactccgctgcgccctggaatgtccattgtttctggtgggacagttttaacaacc
accacagcaggaggagctaaaacaggtgttgcagtggccagttctggggggactggagta
caaagagtggttcagacttcaaatggacctctgaagcaggtgctgttacaagccatacct
gcacagcaacaagtcacacaacaaccacaaggacaagcacagggcacatctggaggtatc
aaggcacctggtgtgacacttacttcagttccacaacagggtgagtctaaacgaattaca
ctccttctacagcagccttctcaagggggcacagtggcctctgccagtggtggacatcgc
cttattttgggtaacttgccaggaaaaattgttctacagggcaaccagctagcagcactc
acgcaagccaagaacaatgcacaggtggcaggggggcagcctaaagttgttactctgcaa
ttgcaagtacaacagcagacatccaattctcaacctaccaagcttcaactggtctcgcag
tctccttcttcaggccagccccaggtgctgcagcttggccagagtcaagtgcaagggcag
aggcttgctgtgccactgaaactattgctgcaacctcaggctggctcatcccagggctct
gtgtcagttgtgaaagtagtgaatccatctgaagcagtgaatgtgtcaaccacctcagga
agtcaggtactcacttctagtcaagccaagggtgctgagagccgacggttagagcatcaa
cgcaagcaggaaaaagcaaaccgcattgtagcagaagcaattgcccgggccaaggcacgt
ggggagcagaatatcccacgtgtattgaaccaggatgagctaccttgtgttacagcagga
ggtgcactagggtcccttggagatgaatgtgggggttctgcttcaaaaaagaagatcagt
aaaaagaagattgataaagaagagagtaaactgggtatcaagaaggccaaagccccatgt
ggagcagccaaatcaaaaggaaaagctaaggcaaatacaatcactcctgtagcctcaaaa
aagaggaagagaaatggctcctctgataacactgatgaagaactgacacctccaccatca
ccccgtggagaggatgatgaaagcaattttcagaagcgtcgttctaaccgacaagtgaag
agaaaaaaatatactgaagatcttgacatcaaaattacagatgatgaggaggaagaagat
gtggatgttattggtccagtcaagcaacctgatatgggtgctgcacctactactacaatg
cagttcttcgtggaaaacccaagtgaagaagatgctgccatagtagataaagttttgtcc
ctgaggcacaccaagaaagagatatctccagggcactatgtcactattgaggagttcttt
gtcaaatacaaaaattactcttatttgcattgtgaatgggcaactttggaacagcttgag
agagacaaacgaattgctcaaaaagtaaagaggttcaaaaccaaaatggcacagatgagg
cacatcttcaatgaggatgaagaaccatttaatccagactacattgaaattgacagaatt
ttggatgaatcgcatagtgttgacaaggataatggagagccccttatatactatctagta
aagtggtgttccctcccctatgaggactctacgtgggaattgaaagaggacgtggatgac
tcaaagatacttgaatttcataggattcagagccgaaagccaaatctaaaaagagtgcca
cggccacttgctagttcatggaagaaactggaattgtcccgtgaatacaagaatggaaat
tgccttcgagaataccagctggaaggagtcaactggttgctgttcaattggtacaacagg
cagaactgtatcctggctgatgaaatgggtttaggaaagacaatccagtccatcacactg
ttacaagagatatacagcgctggtttgcatggaccatttctggtgatcgcaccactctct
acgattgtaaattgggagcgtgaatttgctacgtggactgatatgaacactattgtttac
catggcagcctggcatctcggcagatgattcagcagtatgaaatgtactgcaaagatgat
gatggccacttaataccaggagcgtacaagtttgatgccctgattaccacttttgagatg
gtattgtctgattgtcctgagctaagagagattgagtggaggtgtgttatcattgatgaa
gctcacaggctgaagaacagaaattgcaaactacttgacagtcttcgacatatggacttg
gaacataaaattctcctgactggaacccctctgcagaatacagttgaagaacttttcagt
ttgctgcacttccttgagccttcacagttcccatcagagtctgagtttctgaaagatttt
ggggatctgaagacagaggaacaggttcaaaaattgcaggccatcttgaagccaatgatg
ctcagacgtttgaaagaagatgtagagaagaaccttgctccaaaacaagaaacaattata
gaagttgaactcactatcattcaaaagaaatattatcgagccattttagagaagaacttc
acctttttaacaaaaggggcaggtcagacaaacaatgttcctaaccttctaaacaccatg
atggagcttcgcaagtgctgcaatcatccctatctcataaatggtgcagaggaaaagatt
atctcagagctgcgagaggtttatgatccattagcaccagatttccaccttaatgctatg
gttcgctcagcgggcaagttggttctaattgataaactgctgccaaagttgaaggttgga
ggacacaaggtcctaattttttctcagatggtgcgttgccttgatatactggaggactac
ctcattcaaaaaaggtatttgtatgagcgcattgatggccgtgtgcgtggaaacctgcgt
caagcagcaattgatagattcagtaagcctgactcagaccgctttgtgtttctgctgtgc
acacgtgcaggaggccttggaattaatttgactgctgctgatacttgtattatctttgat
tcagactggaacccacaaaatgatcttcaggcccaggctcgatgtcataggattggtcag
tcaaaggaagttaaggtttatcgtctgatcacgagaaactcttatgagagagaaatgttt
gataaagccagcttgaagctaggccttgacaaagctgtgcttcagtcgatgagtggcaag
gagaacagtgtcaatgggatccaacaattctccaagaaagaaattgaagacctgctgaga
aagggagcatatgcagccattatggatgaggaagatgaaggaaacaagttctgtgaggaa
gatattgaccagattttgcagcgcagaactaccaccataaccattgaatctgaggggaaa
ggctccacatttgcgaaggctagtttcgttgcttcagagaacagatcagacatatcattg
gatgatccaaacttctggcagaagtgggccaagaaagctgatattgattttgattcagtc
aacagaaaaaacacccttgttattgatacaccacgtattaggaagcagactcgccagttt
agttctttgaaggatgaagatattgtggagttttcagattttgatagtgaagaggatgaa
aagcccaggtcccgtcgtcatgaccgccaccatggttatggcaggactgactgtttccga
gttgagaagcacctccttgtgtatggctggggccgttggaaagatatcttaacacatgga
cgttttaagcgcagaatgacagaacgagatatggaaactatttgccgtgctattctggtc
tactgccttctgcattataagggtgatgaaaatattaaaggtttcatctgggatttaatt
tctcctgctgagaatggtcgtaccaaagagctccaaaaccattcaggtctttccattcca
gtaccacgtggacgtaaaggcaaaaaggtgaaggcacagagcacatttgacatgcacaag
gctgactggattcgcaagtataacccagactctctgtttgtggatgacagctacaagaaa
catttgaaacaccaatgtaacaaggttttgttacgtgttcgaatgctgtactatctgaaa
caggaagtaataggggaccaagcagagaaggtattgagtggtgtctatgccagtgagatt
gatattggctttccggaggtggatcaactagagttgccagctagatggtgggacagtgag
gctgacaagtcacttcttattggagtcttcaaacatggatatgaaaaatataataccatg
cgtgctgacccagcactttgcttccttgaaagggttggacgtccagatgagaaagccatc
gtagcagagcagagggcaggagacaattttgccgacttgggagaagggactgactttgac
aaatacacagaagatccagagtataagccattacagggcattactaaggagcaagatgat
gagagtgaatcacctcttcctgatgaagagatctcagttgtagatggagaagaaggacag
atatctcagcctggactggtacactggccaactggttcttctttgacagcccgtctacgg
cgtttgatcactgcatatcaaagaagctataggaaagagcagcttaagattgaagcagca
gagaaaggagacagaagacgacgaagatgtgaagcctcatataagctgaaagagattgca
cgtcgagagaaacaacaaaaatggacgagacgtgaagaatcagagttctatcgtgtggtc
tccacatttggggttgaaatagatccagagtctggcttgtttgattggaggcgttttagg
acctttgctcgcctagacaagaagactgatgaaagtctggttcgctattatcatgcattc
cttgtcatgtgtcggagggtttgccatttgccacagcctgtagcagaagtgccaccagat
atctctttgtctgttgccccaatcactgaagaacgtgcttcccgcaccctataccgaatt
gacctcttgcgtaaaatccgtgaacaagttttgcggcaccctctccttgatgaacgactg
aactctgttgtacagccaagccctgaactaccagactggtggcgttgccctcagcatgat
agagaacttttaataggtgcagcccgatatggtgtaagccgaactgaccagactattctt
ccagatccagtgtttacatttcaccaggccagattggcttacctccaccagaacagagct
tcacaatccagaagctccactcctctgcttctgcaacagcaaaatgcatgctcctccaac
tctgcctcacctctgccagacatatcaagaggatggagcctggaagctgaacaagaggga
ttaagcacacctgactctcaacgggagagggcaaggcctcctagacctgctgagcagcca
ctctttccattaattggcggcatatcaggcagttattctggaatttcagggaacaatctt
ccgccacgctctttgtttgacaaggaaaaggaaaggtgggattgcaagcagggagaaaat
ggtgactcagactctgactcggataaagaagactgttcttcgtctagcacatctactaac
aattcgggatcatcggatgacagcgacacagaaaaagaagataagattggcaaggaacca
aagttgtttgaccaggatgaggaaaatagcctcatgtctcttgccacctcgcaggatgaa
ttgatgggtgatttgtcagttgagcgcacagctctgaaaatgctacaggataaactctgt
gaatggcctaaggaccgagtattaatcaatcgactagatatgttgtgcacagcagtactg
attggaagctgggcagacatccgcagatgcaatctaggtgcttctgtcctgcaacatgac
agtgggtctctgctgcttgcagatgaccaccctagtcctctgtgtgacatatcaccttca
tcaccccaatgcaatcgtcttgtacgcaggaaccaccaggatgacccagaatttactgtt
agactgagacacgatgagggtctcaaactgacctttcaaaagcagtgtttaatgctgcca
aatgggaccaggaacgaacgaggagttaagaagagacgttgccacaatgtggaaggagat
gatactccccaggcatctccattttcaaacccagagtcccgtgtccctgtcattcattca
ctgacacggtctgtcctggttggccttgatgctccaaagcgttgtgagctctctgattgg
ttaaaggaacacccagagtatgaggtcgaaccacaagcccttgctttcttggctggtgct
cacaagaagaaacgacacaaacctaagaaggtagaaaaactagatccagatacacttaca
ggtctagaaagagttcagctggttaatctacgcagtgggaggaagcttggaggtgctttt
gccccatctttgaaaggactcaggcagtgcctggaagagaatcctgattatgttgtctct
cctagctgggcagagctggtccaaaattctggctacctcccagagtctatgcatcacaga
atactttttgaagaaatcaaaacagacaacagacgtcctaaacagctacagcagtctcac
agcaaccatcgtagcatggttaagttggaaccaacatttacccctgtgctgcaggagcag
cctctgctttccagcagtcacaatacagcaacctaccttggaagctgttatacggaactg
gacagaaatcatcaccagcatcacagcatccactcagatgatgcatcctcagtcttccct
ggacagttgtctcctggttatgatgtcaaaatggagacagagctggaaagtgggggcatg
gagtttgactacagtgacaatagccacttgtcactagcttattcagatagggacttctca
tacttgggtgatcccatgatgccaaacaattcagattccagtgaagacggtgattga
DBGET
integrated database retrieval system
