Polypterus senegalus (gray bichir): 120524931
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Entry
120524931 CDS
T08668
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
psex04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120524931
04518 Integrin signaling
120524931
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120524931
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120524931
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120524931
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120524931
NCBI-ProteinID:
XP_039602738
LinkDB
All DBs
Position
3:24745495..24847263
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTLLLFAATQVILLAVVKCQDEDVQEEGSCLQDGQNYKDKDVWKPEPCRICVC
DTGTVLCDEIICEELKDCPNPEIPFGECCPVCGANAPDRDGSPGQKGQKGEPGDITEVVG
PRGPGGPMGPPGEQGPRGDRGDKGEKGIPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMSAGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGPAG
PLGPRGPPGPSGKPGDDGEAGKAGKPGERGPPGPQGARGFPGTPGLPGIKGHRGYPGLDG
AKGEGGAVGAKGEAGAPGENGAPGPMGPRGLPGERGRPGPPGAAGARGNDGLPGPAGPPG
PVGPAGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPG
AKGSTGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEQGPKGENGPVG
PQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGPPGNRGFPGQDGLAGPKGAPGERGPTG
IAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKPGEKGLVGAPGLRGLPGKDGETGAQGPPGPSGPAGERGEQG
PPGPPGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGQPGPRGERGFPGERGSPGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGAAGIPGPKGDRGDLGEKGPEG
APGKDGARGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGTRGAPGDRGETGPPGPAGFAG
PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPPGPPGAAGKDGPKGVRGDGGPPGRQGDTGLQGPAGTPGEKG
EPGEDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPAGEPGKQGGPGAAGDRG
PPGPVGPPGLTGPPGEPGREGNSGSDGPPGRDGATGTKGDRGETGPAGAPGAPGAPGAPG
PVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGETGEAGERGQKGHRGFTG
LQGLPGPPGTAGDQGATGPAGPSGARGPPGPVGPQGKDGSNGLPGPIGPPGPRGRSGETG
PAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKAPDPLRYMRADQASTSLRQHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGETCVYPNPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAVNTASIQMTF
LRLLSTEASQNLTYHCKNSIAYMDQEAGNLKKAILLQGSNDVEIRAEGNSRFTYNVLEDS
CTKHTGRWGKTIIEYKSQKTSRLPIVDIAPMDIGGSDQEFGVDIGSVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactcttctgctctttgcagcgactcaagtcattctt
ttagcagttgtcaaatgtcaggacgaagatgttcaggaggaaggcagctgccttcaggat
gggcagaattataaggacaaggatgtatggaaacctgagccctgtcggatctgtgtgtgt
gacaccgggacagttctgtgtgacgagatcatctgcgaggagctaaaggattgccccaac
cccgagattccatttggagaatgttgccctgtgtgcggcgctaacgcacctgacagagat
gggtcgccgggtcaaaagggacagaagggtgagccaggtgacattactgaagttgtagga
ccaagggggcccggtggtccaatgggccctccaggagagcaaggaccaagaggagacaga
ggagacaaaggcgaaaaaggcattcctgggccacgtggccgtgacggtgaacctggcact
cctggaaaccccggacctcctggcccaccaggtcctcctggaccacctggccttggcgga
aactttgctgctcagatgtcagctggttttgatgagaaagctggtggagctcagatgggc
gtgatgcaaggaccaatgggccctatgggacctcgagggccacctggccccactggcgca
cctggacctcaaggtttccaaggtaaccccggagaacccggtgaaccaggacctgctggt
cctcttggtcctcgtggtccccctggaccttctggcaaacctggagatgatggtgaagct
ggcaaggctggtaagcccggagaacgtggacctcctgggcctcagggtgcccgtggtttc
ccaggaacacctggtcttcccggaatcaaaggtcacagaggttaccctggtttggatggt
gcaaagggtgagggtggcgctgttggtgccaagggtgaagctggcgccccaggtgagaat
ggagccccaggcccaatgggccctcgtggattgcctggtgagagaggacgcccaggacct
ccaggtgctgcgggagcacgcggtaatgatgggttgcctggtcctgctggtccccctggc
cctgttggtcctgccggtgctcctggcttccctggatctccaggtgctaagggagaagct
ggtcctactggtgcccgtggtcctgaaggtgctcagggtccaagaggagaagctggtacc
cctggttctcctggacctgctggcgcatctggcaatcctggtactgatggtattcctgga
gcaaaaggttcaactggtgctcctggtattgctggtgctcctggtttccctggacctcgt
ggacccccagggcctcagggtgcaacaggacctcttggaccaaaaggccaacagggtgat
cccggcattccaggatttaagggagaacaaggtcccaagggtgaaaatggtcccgttggt
cctcaaggtgctcctggtcctgctggagaagaagggaaaagaggtgcccgtggagaacct
ggtgctgctggcccactaggaccacctggtgaaagaggacctccaggtaaccgtggtttc
ccaggccaagacggccttgctggacctaagggtgcccctggtgaacgaggtcccactggc
attgctggtccaaaaggagctaatggcgatcctggccgtcctggagagcctggccttcct
ggtgctagaggtcttactggtcgccctggtgatgctggacctcaaggaaaagttggtcct
tctggtgcacctggtgaagatggacgtcctggcccaccaggtcctcagggcgcccgcggc
cagcctggtgtcatgggtttccctggtcctaaaggagcaaatggtgagcctggtaaacct
ggtgagaagggattggttggcgctcctggtctgaggggacttccaggcaaagatggagag
actggcgcacaaggacctcctggaccttccggtcctgctggtgagagaggagaacaagga
ccacctggaccccctggatttcaggggctgcccggacctcctggcccaccaggtgaaggt
ggcaaacccggtgaccagggtgttcctggagaagctggtgctgcaggtcaacctggtccc
agaggtgagcgtggtttcccaggtgaacgtggaagtccaggacctcaaggtttgcaaggg
cctcgtggattgcctggtacacctggcacagatggtcccaaaggtgcaattggtccagct
ggtgctgctggtgctcaaggacctcctggtcttcagggaatgcctggtgagagaggagca
gctggaatccccggacccaagggtgacagaggtgatcttggtgagaaaggacctgagggt
gctcctggcaaggatggtgctagaggtttgactggtccaattggtcctcctggcccagct
ggtcctaatggcgagaagggtgaatctggaccttctggtccttctggtgctgctggtacc
cgtggtgctcctggtgatcgtggagagactgggccccctggacctgctggttttgctggc
cccccaggtgctgatggtcagcctggtgccaaaggagaacagggtgaggctggacagaag
ggtgatgctggtgccccaggccctcagggtccatctggagctcctggcccacagggacct
actggtgtgtctggacctaaaggagcacgcggtgcacaaggacctcctggtgcaactggt
ttcccaggtgctgctggcagagttggacctcctggccccaacggtaaccctggaccacct
ggtcctcctggagctgctggaaaagatggacccaagggtgttcgtggtgatggtggtcct
cctggccgccaaggagacactggattgcaaggacctgctggtactcctggagagaagggt
gaacctggtgaagatggtccatctggtcccgatggtcctcctggtcctcagggtctggct
ggtcagcgtggtattgtgggtcttccaggccaacgtggtgaaagaggtttccctggactt
cctggcccagctggtgaacctggcaagcaaggtggtcctggagctgctggagaccgtggc
ccacctgggcctgttggacctcctggtttgactggacctcctggtgaacctggaagagag
ggcaattccggatctgatggacctcctggcagagatggtgctactggcacgaagggtgat
cgtggtgagactggtccagctggggctccgggtgcacctggagctccaggtgcccctgga
ccagttggtcctactggtaaacaaggagaccgtggtgaatcaggcgcacaaggaccttct
ggacctcctggacccgctggagccagaggaatgcctggaccacaaggaccccgtggagac
aaaggagagactggtgaagctggtgagagaggacagaagggacaccgtggtttcacaggt
ctgcagggtctgcctggacctcctggtactgctggtgatcaaggtgccactggtcctgct
ggtccttctggtgcaagaggccctcctggtccagttggtcctcaaggaaaggatggatct
aatggtttgccaggtcctattggtccccctggaccccgtggacgttctggagaaactggc
cctgctggacccccaggtaatcctggaccacctggtcctcctggtcctcctggccctgga
attgacatgtcagcatttgctggattatcccagccagagaaggctcctgatcctctgcgt
tacatgcgtgctgaccaagcctccacctctttgaggcagcatgatgccgaggtagatgcc
acccttaaatctcttaacaaccaaattgagaacatccgtagtccagagggctccaagaag
aaccctgcacgtacctgcagagacctcaaactgtgccacccagactggaagagtggagac
tactggattgatcccaaccaaggctgtacgatagatgccatcaaggttttctgcaacatg
gaaactggagagacctgtgtctatcctaaccctgcaagcattccacgcaagaactggtgg
tcaagcaagagcaaggaccgcaagcacgtctggtttggcgagacaatgaacggaggattc
catttcagctatggagatgacagcctggctgtcaacactgccagcatccagatgaccttc
cttcgacttttgtcaacggaagcttcccagaacctgacctaccactgtaagaacagcatt
gcctacatggaccaggaagcaggcaatctgaagaaggccatcttgcttcaaggatccaat
gatgttgaaatcagagcagagggcaacagccgcttcacgtacaacgtgctggaggacagc
tgcacgaaacacacaggccgatggggcaagactataattgaatataaatctcagaagaca
tcccgtctacccattgtggacattgcaccaatggacattggaggatcagaccaagaattt
ggtgttgatattggctcagtttgcttcttgtaa
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integrated database retrieval system
