Polypterus senegalus (gray bichir): 120525499
Help
Entry
120525499 CDS
T08668
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120525499 (prdm1a)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120525499 (prdm1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-C2HE
zf-met
B129_C2H2-zf
zf-C2H2_FBX41
Motif
Other DBs
NCBI-GeneID:
120525499
NCBI-ProteinID:
XP_039603784
LinkDB
All DBs
Position
3:complement(115935961..115962322)
Genome browser
AA seq
818 aa
AA seq
DB search
MCGSAQAFPAASQHSSEILRAEDPPEMRDCTMKMDVEDADMTKWTEEEFEEKCTYIVNDH
PVDLISDAGNLTRAEASLPRNLIFKYAPNSKEVIGVSSKEYIPKGTRFGPLVGEAYRSDA
VPKNANRKYFWRIYSDGELHHFIDGFDEEKSNWMRYVNPAHSAQEQNLAACQNGMNIYFY
TVKAIPANQELLVWYCAEFAKRLHYPPSRELVIKIQQSLMDKKQQATETDCIQQKTSGKT
EHSVREILKMNNKPPRSSPGDSEIPLKKPNMERTFLPRVVYPVRPHVPEDYSKSNPVYGL
DSPSYITQSPVQSSATPSPTACSNLDHSLQSNSPHSSPGLSSSPPTPSSQEPKDLFPYLN
RLYNGKCISAYPSYTPPNHVSSAFLHSYNSVSPHYSRYLLSHYPVGYSGINGLNDLSTVG
GAGTNLNGLNSFSLFQRMYPLYNNLLAGSGLTQHMLNQPVLPSVLPPKGNRRLLLSLEPH
RDSLIPAPNSAFSATGLATSLKDSPPSPNTGSPTAGTAAILDHCMPNKSTSAMLPSSMND
DEAVNPTKVKRNMSGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPF
KCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKL
CPAKFTQFVHLKLHKRLHTRERPHKCLHCQKSYIHLCSLKVHLKGNCLASQSSGGRSSEE
LNRVNEEIDKFDISDNADRLDEVDNMDVETVVEKQIFHMLWREMDLKTSFHTSIGNGLIP
GGLYEPSNETSVIKLPQSSSLPLLPLKVKQEAIEPRNP
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctcggctcaagcattcccggctgcctcacagcatagctcggaaatattacgt
gcagaggacccaccggagatgagagactgcaccatgaaaatggacgtggaggatgccgac
atgaccaaatggacagaggaggaatttgaagagaaatgtacttacatagtcaatgaccat
ccagtggaccttatttctgatgctggaaacttaacccgcgctgaggcttctcttccgcga
aacttaatatttaaatatgcacctaattcaaaagaggttattggagttagcagcaaggag
tacatcccaaaaggaactcgttttgggcctcttgtgggtgaggcctataggagtgatgct
gtaccgaaaaatgcaaatagaaagtatttctggcggatctattctgatggggagcttcac
cacttcattgatggctttgatgaagaaaagagtaactggatgcgttatgtcaatccagca
cattcggcacaggaacagaacctggcagcttgccagaatggaatgaacatttacttttac
actgtgaaggctattcctgcaaaccaggagctactagtctggtactgcgcagaatttgcc
aagagacttcactatccaccttcccgggagcttgtgataaaaatccagcaaagccttatg
gacaaaaagcagcaggcgaccgagacggactgcatccagcaaaaaacatccggaaagaca
gagcacagtgtgagggagattcttaaaatgaacaataagcctcctcgcagctctcctgga
gactctgaaattcctctaaagaagcccaacatggagcgcactttcttgcctcgggtggta
tatcccgtccgtcctcatgtcccagaggattactcaaagtctaatccggtttatggcctg
gattctcccagctacattactcaatctccggtccagtcatctgccactccaagtcccact
gcatgcagcaatctggatcacagtcttcaaagtaacagtccacacagcagccccggcctt
tcaagctctcctccaactccttcttctcaggaacccaaagatctcttcccttaccttaac
agactatacaatggcaaatgcatcagtgcctacccaagctacactccccccaaccatgtg
tcttcagcctttttacattcctacaattcagttagccctcattattcgagatacctttta
tctcattaccctgttggctatagtggcattaatggtctgaatgatctaagcacagttggt
ggggctggcactaacttgaatggactaaatagctttagcctgttccaacgtatgtatcct
ctttacaacaacttgctggcggggagtggcctcacacaacacatgctaaatcagcctgtg
cttcctagtgtgcttccacccaaaggaaatcgacgacttttgctttccttagaaccgcac
agggattctcttatcccagccccaaacagtgctttttctgccactggtttggccactagc
ctcaaggatagccctccaagcccaaacactggctctcccacagcaggaactgcagccatc
ttggaccactgcatgccaaataagtctacctcagccatgttgcccagcagcatgaatgat
gacgaagctgtgaatccaaccaaggtgaagcgcaatatgtctggctacaagactttgcct
tacccgttgaaaaaacagaatggcaagatcaagtacgagtgtaatgtctgcagcaagacc
tttgggcagctatccaacttaaaagttcatcttcgtgtacacagtggagaacgacctttt
aagtgtcaaacctgtaataaagggttcacacaattagcacatctacagaagcactacctt
gttcacaccggagaaaaaccacatgagtgtcaggtttgtcataaacgtttcagcagcacc
agcaacttaaagactcatctgcggttgcattctggggagaagccttaccaatgcaaattg
tgccctgcaaagttcacccagtttgttcacctcaagctgcacaagcggctgcacacccgt
gagcgaccacacaagtgcctacactgccagaagagctatatccatctctgtagtctcaaa
gtccacctcaagggcaattgtctagcttctcagagttctggcggacgttcttcagaagag
ctaaatcgggtcaatgaagaaattgacaagtttgacattagcgacaatgctgaccgcctt
gacgaggtggataacatggacgtagaaacggtagtggagaaacagatattccacatgctg
tggagggagatggaccttaaaacctcctttcacacgagcattggcaacggacttattcca
ggggggctctatgagcctagcaatgagacatctgtcattaagttgcctcagagtagctcg
ctgcctcttctacctctaaaggtaaaacaagaagcaatagaaccccgaaatccttga
DBGET
integrated database retrieval system
