KEGG   Polypterus senegalus (gray bichir): 120525557
Entry
120525557         CDS       T08668                                 
Name
(RefSeq) histone deacetylase 2
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03082  ATP-dependent chromatin remodeling
psex03083  Polycomb repressive complex
psex04110  Cell cycle
psex04330  Notch signaling pathway
psex04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120525557
   03083 Polycomb repressive complex
    120525557
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    120525557
   04350 TGF-beta signaling pathway
    120525557
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    120525557
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:psex03036]
    120525557
Enzymes [BR:psex01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     120525557
Chromosome and associated proteins [BR:psex03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     120525557
   HDAC complexes
    Sin3A-HDAC complex
     120525557
    BRAF-HDAC complex
     120525557
    REST complex
     120525557
    SHIP complex
     120525557
    MiDAC complex
     120525557
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     120525557
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    120525557
  Chromatin remodeling factors
   NuRD complex
    120525557
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 120525557
NCBI-ProteinID: XP_039603887
LinkDB
Position
3:complement(132751818..132819612)
AA seq 489 aa
MAYTIQSGIKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATAEEMTKYHSDDYIKFLRSIRPENMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGAVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPLRDGIDDESYE
QIFKPLISKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFVKTFNLPLLML
GGGGYTIRNVARCWTYETAVALDTDIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTLEY
MDKIKQRLFENLRMLPHAPGVQMQSIPEDIVADDSGDEEEDDSDKRISIRASDKRIACDE
EFSDSEDEGEGGRRNVANHKKVTKRPRMEEDKKESEEKKSESKEDEKSKESSSDKMDTKG
VKTEQPSSA
NT seq 1470 nt   +upstreamnt  +downstreamnt
atggcatacacgattcagtccggaataaagaagaaggtctgctattattatgatggtgac
attggtaactactattatggacaaggtcatccaatgaaacctcacagaatccgtatgact
cacaatctccttctgaattatggtctttataggaaaatggaaatatatagaccacataaa
gctacagcagaagaaatgacaaagtaccatagtgatgattacattaaattcttaaggtca
ataagacctgaaaacatgtctgaatacagcaagcaaatgcaacgatttaacgttggtgaa
gactgtcctgtgtttgatggtttatttgaattttgtcagttgtcgacaggtggatcagct
gctggtgcagtgaagttgaacaggcaacagacagacattgctgttaactgggctggagga
cttcaccacgctaaaaagtcggaggcttcgggtttctgctatgtgaatgatattgttctt
ggcatactagagttattaaaatatcatcagagagttttgtacattgatattgatattcat
catggggatggtgttgaagaagcattttatacaacagaccgcgtaatgacagtctcattc
cacaaatatggggagtattttcctggaactggtgacctgagagatattggagcaggaaaa
ggaaaatattatgcagtcaactttccccttagggatggaatagatgatgaatcctatgaa
caaatatttaaaccgttaatttcaaaagtcatggaaatgtaccaacctagtgccgtggtt
cttcagtgtggtgcagattctttgtctggtgatcgtcttggttgttttaatctcacaatt
aaaggtcatgctaagtgtgttgagtttgtaaagacatttaatcttcccttgctaatgctt
gggggtggaggctacacaatccggaatgttgcacgatgctggacatatgagactgctgtt
gcattggatactgacatacccaatgaactgccttataatgactattttgaatactttgga
ccagactttaaattacacattagtccttccaacatgacaaaccagaacaccctagagtat
atggacaagatcaaacaacgtctctttgaaaacttgcgcatgttgccgcatgcaccagga
gtacagatgcagtctattcctgaagatattgttgctgatgacagtggagatgaagaggaa
gatgattcagacaaacgcatttcaattcgagcatcagataaaagaattgcgtgtgatgaa
gaattttctgattctgaggatgaaggggaaggtggtcgtagaaatgttgcaaaccataaa
aaagttacaaaaaggccaaggatggaagaagacaaaaaggaatcagaagaaaaaaaatca
gaatcaaaagaggatgaaaaatctaaagaaagcagttctgataaaatggacacaaaaggc
gtcaagacagaacaacccagcagtgcttga

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