Polypterus senegalus (gray bichir): 120525660
Help
Entry
120525660 CDS
T08668
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120525660 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120525660 (arid1b)
03021 Transcription machinery [BR:
psex03021
]
120525660 (arid1b)
03036 Chromosome and associated proteins [BR:
psex03036
]
120525660 (arid1b)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Helix-turn-helix
ARID
120525660 (arid1b)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120525660 (arid1b)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120525660 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
120525660
NCBI-ProteinID:
XP_039604076
LinkDB
All DBs
Position
3:complement(159228786..159946255)
Genome browser
AA seq
2160 aa
AA seq
DB search
MIMAAQVATAPATQKAKNPGLSSTLSPDLNSEGSGQGSGSMLGAGDGSGSSMNNVDHHCH
LHRHHHHAAELNAANATSANSKSDTREKEAADATLVSTISSTSASMETALIASHKLKNIG
GGGDHPPSAHPHAPPQPLPPPPPPFSQFQPHHSHHVQNSKTGQTTSESDGPQHGGKENLL
GNQMEQPPPPMLNKSEEEEEDEEEDVPCRSGEPMGGRYEHASLGPPGSISGQSAGGNGSL
SDFNHYYSNARGGPCFDQYGGQQSPGMGIMHPATPSSIDPLQNSHESYPNSQFNHYPGYR
ASYGGAGYGMMGSPRQGSGVLMGPSKTLASSATPTPGNTRGVGFQRFTGQSRQHPSGATP
TLNQLLTAPSPMMRGYSAAYSEYNHPSAQAPPPPSQQHHTGIGLCKDMASQYGPAAPGWG
GQQRSHPAASAGNSGQAMSRSQANQMEPMAMKRPQLFGMSSGPYSQPQQGGSYPGQPYGS
PSPHRYQMALHGHSQGGMGGMHFSQQQMPTQYTQQGVSGYCQQSQQTYYSQPQQPVAPTQ
PSYMQQRIPPQQDISQEGYGNRSQTSVTPGKTSHEEMNLMQQDRPSSLPDLSGSIDDLPT
GTEATLSSAVSASGSTSSQGEQSNPAQSPFSPHASPHLSSMRSGPSPSPVGSPVGSNQSR
SGPISPASISGSQMASQTPGNQSDAGSHSTLSQSPMSQERGFMPGIQRSTPMSQYGSQQT
GPSMSPHPSPGGSMHPGIGTYQQGSSGNAYGPQSGQYGPQGNYPRPPSYGGVPSGNYSGP
GPGMSNSLGMNASSPMHGQGPGQPCGSMPIGRGPASGIVSRSYAGNVSNVAPSSPNMPQQ
AGPGMGPPMPSINRKAQEAAEAVMHAAASSTQSRQSNYSSMNQSGMMASNSPYSQSINNN
SGMMNPQTPHYNLPTGMVNSSAGPIGLPGDGTGSDCKPLKSDIKEDTILPSEAKYKDSYS
AQSFSQPPIPGNLAVPSPLSPSMAGISSFHGDESDNIKSPGWPKTPSSPKSCSSFISNEK
ITKLYDMGNEPERRMWVDRYLSFMEERGTVVLHLPVVGKKPLDLCRLYLSVRDLGGLAQV
NKNKKWRELASSLNVGTSSSSASSLKKQYIQYLFAFECKVERGEEPPPEIFAVGDNKKQP
KLQPPSPGNTEAFMPPSQLSNSGMQDMYSRTPSGGLSALGIGQRQQYLYSPGYDRSLRPD
HGMGPDGSMGPPGGQNNMAASNSDPSMYSPNRYHGQQRHEPYGQQYPVQGQPSTQMPYGS
HQTGMFPHQQGYKRPMDGLYSLPAKRHEGDIYNMQYGNQQPEMYGQYGSSYSGPDRRSLQ
SQYSYPYNRDRMQTPGPAPTAQHAMPSQMMSGPLQQCSTTNSAEAPQQNVWPSRMDMTYP
YSNRQGPGGPSQGSPYHSMGRGEEIMVAEQRLNSDGQWSNHVSQRQSSYLPPSSAPLAPM
TTRSSQSSYQSPPSMPNHISRAPSPASFQRSLDAHMSPSKSPFISAKMQKIGHPVSTSQA
SGPPAQPSSAPRQEITFPLGSVEATPPILKSKRKLTSKDTGTPEAWRIMMSLKSGLLAES
TWALDTINILLYDDSTIASFNLSQLPGFLELLVEYFRRCLIEIFGILQEYEVGASDLQTV
SESVNDEKERLLYPVSNGITEDGESEGQKKMYCLGKPDTSKSEEVEEEENQDGDSGIDSE
EQTCEKPEETPKQASKFDKLPLKVVHREDDFVVDCSDQLGQVENFHSGLLLWQIGGGEST
KHIQTHFECKMDLFSRTSYRSPKANLTSEQRDSQADQQDSEKDVVKSIMATVDDMLNTHS
GQLQEETTSSPTHSSNFPFGIHQTKNHKNMKVLEDEPKGHDEGPLCPILDWQDSLAKRCM
CVSNIVRSLSFVPGNDAEMAKHPGLVLILGKLVLLHHGHPERKRAFEKEEEKFKGLSCSK
NEWWWDCLQVLRENTLVTLANIAGQLDLSAYSENICLPIIDGLLHWMICPSAEAQDSFPT
VGINSALTPQRLVLETLCKLSIHDSNVDLILATPPFSRQEKLYSTLVRYLGDRKNQVYRE
MSVAILSNLAQGDILASRAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLLQMQHSHMDP
PSINMMCRAARALLAMAKLEENRSEFLLYESRLLDISISSVLNSIVASIVCEVLFQIGRL
NT seq
6483 nt
NT seq
+upstream
nt +downstream
nt
atgatcatggccgcgcaagtagcgactgctccggcgactcagaaggctaaaaatccgggt
ctgagcagcactttgagtccagatttgaactcagaagggagcgggcagggatccggatcg
atgctaggagccggagatggctctggcagcagcatgaataatgtggatcaccattgccac
ctccaccgtcaccaccaccacgcagccgagctgaacgcggccaatgcaacttctgcgaac
agcaaatcggacacgagagagaaggaagcggcggacgcgaccctcgtctcgaccatttct
tccacttctgcaagcatggagacagctttaatagcgagtcataaactgaaaaatattggc
ggtggcggcgatcaccctccttcagctcaccctcacgcaccaccgcagccactacctcct
ccgccgccaccgtttagccagtttcagccacaccactcacaccacgtccaaaacagcaag
accggtcagacaacgtctgaatcggacggtcctcagcatggaggaaaagaaaatctgttg
ggcaaccagatggagcaaccaccgccaccaatgctgaataaaagtgaggaggaggaagaa
gacgaggaggaagacgtgccctgtagatcgggcgagccgatgggcggtagatatgagcat
gccagtttgggacccccgggcagcatcagcggacagagtgcagggggtaacggcagcctc
tccgactttaatcattactatagcaatgccagaggagggccttgctttgatcaatatggc
ggacaacaaagccccgggatggggataatgcatcccgcaacacccagcagcatcgatcct
ttgcaaaactcccatgaaagctacccgaacagccagtttaatcattacccgggctacaga
gcgagctacggtggcgctggctatggcatgatgggatcaccgaggcaagggagcggcgta
ctgatgggccccagcaaaacattagcaagctccgctaccccaactcccgggaacacccgt
ggtgtgggcttccaaaggttcacaggacagagtagacaacacccgtcaggggccactcca
actctaaaccaacttctgacggcccccagtcccatgatgaggggttacagcgcagcttac
tcagagtataatcaccccagtgcccaggcaccaccaccgccatcccagcagcatcacact
ggcattgggctgtgcaaagacatggccagtcagtacggacctgcagccccaggatgggga
ggtcaacagaggagccaccccgctgccagcgcaggaaacagtggacaagcgatgagtcga
tcgcaggcaaatcaaatggagccaatggcaatgaaacgacctcaactgtttgggatgagc
agtggtccttattcacagcctcagcagggtggctcatatccagggcagccctacggatcc
ccttctcctcacagataccaaatggcactgcatggacacagtcaaggaggaatgggtgga
atgcacttctcccagcagcagatgccaacacagtacacccagcaaggtgtgagtgggtac
tgccagcaaagccaacagacttattacagccaaccccaacaacctgtggctccaacacaa
ccttcatatatgcagcagagaattccacctcagcaggatatatctcaggaaggttatgga
aaccggagtcaaacgtctgtgacaccaggaaagacaagtcatgaggagatgaacctgatg
cagcaggatcggccttccagtttgccggacttgtctgggtcaattgatgacttgcctaca
ggaaccgaggctaccctgagctctgctgtcagtgcctctggctccacaagcagtcagggg
gaacaaagcaatccagcacagtctccattctcaccccatgcatcaccacatctttccagc
atgcgcagcggcccctcgccatctccagtgggctctcctgtggggagtaatcagtccagg
tcggggcccatttctccagcaagcatttcaggtagccagatggcttcacagaccccagga
aaccaatcagatgctggatctcattccacactcagtcagtccccaatgtctcaggagaga
ggttttatgcctggcatacagcggagcactcccatgtcccagtatggctcacaacagact
ggaccatcaatgtcaccgcatccatcccctggagggtccatgcaccctggaataggaaca
taccagcagggtagctctggaaacgcatatggaccacagagtggacagtacgggcctcaa
ggtaactacccaaggccacctagttatggaggagttcctagtggaaattacagtggacca
ggaccaggcatgagcaacagtttgggtatgaatgccagcagccccatgcatgggcagggt
cctgggcagccatgcggctctatgcccataggtcgagggcctgcctctggaattgtcagc
agatcatatgcagggaatgtgagcaatgtagcacccagctctccaaacatgcctcagcaa
gcaggcccagggatgggtccacctatgcccagcatcaaccgaaaagcacaggaggccgcc
gaggctgtcatgcatgctgctgcaagttccacacaaagcaggcaaagcaactactcaagc
atgaatcaaagtggaatgatggcctcaaattcaccttatagccagtccataaataacaac
tctggaatgatgaatcctcagactcctcactacaacctccccacaggaatggtcaacagc
tctgccggtcccattggtctccctggagatggaacaggtagtgactgcaaacctttgaaa
tcagacataaaagaggacaccattctaccctcagaagccaaatataaggatagctacagc
gctcagagtttttcacagccccccatccctggcaatctagcagtcccttcccccctgtcc
cccagcatggctggcatctcctcatttcatggagatgaaagtgataacataaagagccca
ggctggccaaagactccgtcgagccctaagtcctgttcgtcttttataagcaatgagaag
atcaccaaactctatgatatgggcaatgagccagaacgcagaatgtgggtggaccgttac
ctgtcttttatggaggagagggggaccgttgttctccatcttcctgttgttgggaaaaaa
cccctagacctgtgtcgactctacctttcagttagagatctaggaggccttgcccaggtt
aacaaaaacaagaagtggagggaactggccagcagtcttaacgtggggacatcaagcagc
tctgccagctccctaaagaaacagtatatccaatacctgtttgcttttgaatgtaaggtt
gagagaggagaggagcctccacctgaaatatttgctgttggtgacaacaagaaacagccc
aaactacaaccaccttcaccaggaaacacagaagccttcatgccaccttcacagttatcc
aacagtggaatgcaggacatgtatagtcggaccccctctgggggactgtctgctctgggg
ataggtcaacgtcagcaatacctttacagtcctggttatgaccggagccttaggccagac
catggaatgggcccagatggcagtatgggaccaccgggaggtcagaataacatggctgct
tctaatagtgatcccagcatgtattctcctaaccgataccatggccaacaaagacatgag
ccatacggacaacagtatcctgtccaggggcagccttcaacccagatgccatatggatct
catcagacggggatgtttcctcaccagcagggttataaacggcctatggatggcttgtat
agcctccctgccaagcgccatgaaggagatatctacaacatgcagtacggaaaccaacag
ccagagatgtatggccagtatggcagcagctactcagggccagatcggcgatccttacag
tcacagtattcttatccttacaaccgtgataggatgcagacaccaggtccagctcccacg
gcgcagcatgcaatgccatctcagatgatgagtggccccctgcagcagtgctccaccaca
aactctgccgaagctcctcagcaaaatgtttggccttccaggatggatatgacataccca
tattcaaatcggcaaggaccaggtggaccctctcaaggttctccttaccacagtatgggc
agaggggaagagataatggtggctgaacagaggctgaactccgacggccaatggtcaaac
catgtcagccagcggcaatcatcttacttgcctccatcctctgccccacttgcacccatg
accacacgatcatcccagtcgtcgtaccaatcaccaccaagcatgccaaatcacatctcg
cgagctcccagccctgcatcttttcaacgttctttggatgcccacatgtcacccagtaag
tcgcccttcatctcagcaaaaatgcagaagattggccatcctgtttcaacttcacaggcc
tctggacctcctgctcagccctcatctgctccgagacaggaaattacatttccactggga
tctgtagaagccactccacccattctaaagtcaaagcgcaagttaacatccaaagatact
ggaacaccagaggcatggcgtataatgatgtctttgaagtctggccttcttgccgaaagt
acatgggcgctggacactattaatattcttctgtatgatgatagcactattgcctcattt
aatctctctcagttgcctggattcctcgagctattggtagaatatttcagaagatgcctg
attgaaatctttggtattcttcaagaatatgaagttggtgcgtcagatctacaaactgtt
tctgaatctgttaatgatgaaaaggaaagactactctatcctgtcagcaatggaatcaca
gaagacggtgaaagtgaaggacagaaaaaaatgtactgcttgggaaagccagacacatcc
aaatcagaggaggttgaggaagaggaaaaccaagatggtgatagtggaatagatagtgaa
gaacagacatgtgagaagcctgaggaaaccccaaagcaagccagcaaatttgacaagcta
ccactgaaggtggtacaccgagaggatgactttgtggtggactgctcagaccagctggga
caagtagaaaactttcatagtggcctcctcctttggcagattggtggaggtgagtccaca
aaacacatccagacccattttgaatgtaaaatggatttgtttagtaggacaagctacaga
agtcccaaagcaaatttaacctctgaacagagggatagccaagctgaccaacaagattca
gagaaggacgtagtaaagagtattatggcaaccgttgatgatatgctgaatacccattct
ggacaactgcaagaggaaaccacaagttctcccactcattctagtaattttccatttggc
atccaccaaactaagaatcacaaaaatatgaaggttttggaggatgaaccgaaaggtcat
gatgagggtccactgtgccctattttagactggcaggactcgctggcaaagcgctgcatg
tgtgtatccaacattgtccggagcttatcgtttgtgcctggtaatgatgccgagatggct
aagcatcctgggcttgtccttattttaggaaaactagttctgttacaccatggacatcct
gaaagaaagagagcctttgaaaaggaagaggagaaatttaaggggttgtcatgcagtaag
aatgaatggtggtgggactgcctgcaggtcctacgagaaaacacactagtcactttggct
aacattgctgggcagctagacctatcagcttattccgaaaatatctgcttgcctatcatt
gatggtctcctccactggatgatatgtccttcagctgaggcgcaagactcctttcccaca
gtgggcataaactctgctctaactcctcagagacttgtccttgagacactttgcaagctt
agcattcatgacagcaatgtggaccttattcttgccacccccccatttagtcgacaagag
aagctttactctacattggttcgatatttaggggaccggaagaatcaagtgtaccgagaa
atgtcagtggcaattttgtctaaccttgcccaaggggacatattagcatcccgtgctatt
gctgtacagaagggaagcattgggaacttaattagctttttggaggatggagttacaatg
gctcagtaccaacaaagccagcacaacctcctgcaaatgcagcactcgcatatggatcca
ccaagcattaatatgatgtgcagagcagccagagcacttttggctatggctaaattagag
gagaaccgctccgagtttcttctgtatgaaagccggctgcttgacatttccatatcttca
gttctgaactctatagtggcgtccattgtttgtgaagtactctttcagattgggcgctta
tga
DBGET
integrated database retrieval system
