Polypterus senegalus (gray bichir): 120525665
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Entry
120525665 CDS
T08668
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120525665 (scaf8)
03041 Spliceosome [BR:
psex03041
]
120525665 (scaf8)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120525665 (scaf8)
Spliceosome [BR:
psex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
120525665 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120525665
NCBI-ProteinID:
XP_039604095
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All DBs
Position
3:complement(161244838..161433809)
Genome browser
AA seq
1254 aa
AA seq
DB search
MEAVKAFNSELYSLNEYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIINTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGILPPSITSAHASTTATVSNNTPGTPVTPATPANIVQGIPDSWT
SQLSNTDTIAAVAQLLQSPQGQQLQQLVQTLQMQQQKPQPSLLQALDAGLVVQLQALTAQ
LTAAAAAANTLNPLEQRVSFNKKLLEQFDFGEDSEHVDESKKDISSTQLPVVAESINSSI
FHQLAEHLQQQNLEQFQKQLMEQQDQQPQKTSLETQEGMFGSENSATPSQDDSQTQLQDP
DNKLDDSLDNQQQEAVVACGTANTVYGKVEGWLQDMEIDEAQDIVDEDIFEPEEKKVIES
RSRTRSKSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKE
RQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYIC
MVHRQDAFRARQKLSTGNYKIGSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKV
DDLDGFAEGGIIDQETVNNEWEAVKSCEPAKENTSQTVTTETTTLTTTQAEIFTQPVAML
PVQIPVAQGVPSVSLVPPAFPVTMTLPPPGYGPPPPPFLRPGFNASQPPPGFMPPPVVPQ
TSIAHVPSLGQPPVSTSQETVKDSSYGGFMPPTSTIHGSFSSAGLSGIYNPVSAQSSISE
SDDKELQVSENRATSTDNKTGLGVHSDTRPSSVSLLGMPPAVSLSQNIHHSSIPAPRIPG
LLPLDIRPGMMPPPGGPRFPLMMQPGMPPPPPGIPPPTGIPPQVGLPPQVGMLPQAGMPP
PTGVPPQVGMPPQIGLPPQTGMPHQHGIPHHSGLHLQPGMPPPGRMPPHPGLPHPPNLPP
PGVLDPMSARHRGPFPPVDHFSRPEGHFGRPNNPSGNSVSKHNDTASAGNDNIQQEGDKD
YRFPPVEKRDGLLRQPIENRDSVVRPHSVMDGRDGQRGLAGDGSRREPLSGFRSESRWGP
PRGDFDEREHRGISFTGPKSYSDERTGSGNFRFDERVGPTWSRGFETDIHQDFDDRRPSW
ERQRDRDDRDFDFRKEMNGNRFGCEQEREPWSASAPHSQAFKYYESESNNQKKDESSQVN
GDKTDNETQPEQDKMHPELSKQQVSPKESGNEKNEPKDSVEKQPVVEKTETEGT
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtaaaagcttttaacagcgagctgtactcattgaatgaatataaaccacct
atttccaaagccaaaatgactcagataactaaagctgcaattaaagctataaagttttac
aagcatgttgtacagagtgtggaaaaattcattcagaaatgcaaaccagaatacaaagtt
cctggactgtatgttattgactccattgtacgtcagtcacgacatcagtttggtcaagaa
aaggatgtgtttgcaccacggttcagcaaaaacataatcaacacttttcagaacctgtac
agatgcccttctgatgataagagcaaaattgtccgggttttaaacttgtggcagaagaat
agtgtttttaagagtgacatcatacagcccttattggatatggcagctggcatactacct
cccagcataacctctgctcatgccagtacaactgccacagtcagtaacaatacacctgga
actcctgtaacccctgccacaccagcaaacattgttcaaggcattcctgattcctggaca
tcacagctttccaacacagatacaattgctgctgttgctcaacttctgcagagtcctcag
ggacagcagcttcaacaattagtgcaaactttacagatgcagcaacagaagccacagcct
tcattacttcaggccttggatgcaggacttgtcgttcaattgcaggcactcacagctcag
ctcactgctgccgctgcagcagcaaacacattgaatcccctggagcaaagagtttctttt
aacaagaagttattggaacagtttgactttggggaggactctgaacatgttgatgaatca
aaaaaggatatatcctctactcagctgcctgttgtagcagaatccatcaacagttcaata
ttccatcaactggctgaacacctgcagcagcaaaacctggagcaatttcagaagcaacta
atggaacaacaagatcaacaacctcagaagacttcacttgagactcaagaagggatgttt
gggtcagaaaactctgcaacaccgtcacaagatgatagtcagactcagcttcaagatcct
gataacaaattggatgattcccttgacaatcagcagcaggaagccgtggttgcctgtggg
actgctaacactgtatatggcaaagtggagggatggctgcaggacatggaaatcgatgaa
gcacaagatatagttgatgaggacatttttgaacctgaggaaaagaaagttattgaatca
cggtctaggacacgctctaaatctcggtctagatcaccaaggaaaagaaggtcacggtct
cggtctggctcacgaaaacgaaagcatcggaaacgttcaaggtcaagatcaagagagaga
aaaagaaaatcttctagatcatattcaagcgagaggagagcacgagaaagagagaaagaa
cgacagaaaaagggactgcctccaatacgatcaaaaacacttagtgtgtgtagtactaca
ctgtgggtcggtcaggtggacaagaaagccactcagcaagatttaaccaacttgtttgaa
gaatttggacaaattgaatcaataaatatgattcctcccagaggatgtgcgtacatatgc
atggttcacagacaagatgcttttcgagccagacagaagcttagcacaggaaattacaaa
attggttccaaagtcataaagattgcatgggcacttaacaaaggagtaaagcaggagtat
aaacaattttgggacgttgatcttggagtaacatatataccttgggagaaagtcaaagtg
gatgaccttgatggttttgctgagggaggaattattgaccaagagacagtgaacaatgag
tgggaagcagtaaaaagttgtgagccagcaaaggaaaataccagccagactgtgaccaca
gaaactaccactctcaccaccacccaagcagaaatcttcactcagccagttgctatgtta
cctgttcagattcctgttgcccaaggtgttccatctgtcagtttagtaccaccagctttc
cctgtgacaatgactcttccaccaccgggatatggccctcctccacctccatttttacgg
ccaggtttcaatgcatcacagcctcctcctggttttatgccgccccctgtagtccctcag
acttctattgcccatgtaccatcattaggccagcctccagtttctacatctcaggagact
gtaaaggattcttcttatggaggttttatgccaccgacaagcactattcatggctctttc
tcatctgctggtttgagtggaatctataatcctgtttctgcacagagcagcatcagtgaa
tcagatgacaaagaactgcaagtttcagagaaccgagcaacttctacagataacaaaaca
ggactaggagtccacagtgatacacgtccaagttcagtcagtctccttggaatgccccca
gcggtgtctttatctcaaaatatacatcattcaagtattccagccccaaggatacctgga
ttattacctttagacattcgaccagggatgatgccaccacctggtggtccaaggtttcca
cttatgatgcagcctggaatgcctcctccacctcctggcatccctccaccaactggcatt
ccaccacaagttggactgcctccgcaagttggaatgcttccccaggctggaatgcctcca
cctactggtgtacctcctcaggttggaatgccaccacagattggtttgccaccacaaaca
ggaatgccccatcaacatggaattccccatcattctggcttgcatttacaaccaggaatg
cccccaccaggacgtatgcctcctcatcctggattaccccatccaccaaatttgccccct
ccaggagtacttgacccaatgtcagctagacatcgagggccgtttccaccagttgaccat
tttagcaggccagaaggacattttggtagacccaataatccatctggtaacagtgtatca
aaacataatgatacagcatcagctggtaatgacaatatccaacaagaaggcgataaagat
tatcgctttccccctgtggaaaaacgtgatggtttgcttagacaacctattgaaaacagg
gacagtgttgtaaggccacattctgtgatggatggaagggatggacagagaggtcttgct
ggagatggaagcagaagggaacctttaagtggttttagatcagaaagccgatggggccct
ccccgaggggacttcgatgaacgtgaacacagagggatctcatttactggccctaaatca
tatagtgatgaacgaactggttctggaaatttccgatttgatgaacgtgttgggccaaca
tggagccgaggatttgagacagacattcaccaagattttgatgaccgtcgaccttcttgg
gaacgacagcgagatcgggatgatagagattttgatttccgtaaagaaatgaatggaaac
cgctttggatgtgagcaagagcgtgaaccatggtctgcttctgctcctcattcacaagcg
tttaagtattatgaaagtgaaagtaacaaccaaaagaaggatgagtcatctcaggtgaat
ggtgataaaacagacaatgaaacccaaccagaacaagataaaatgcaccctgaactttca
aagcagcaagtttcccctaaggaatcgggcaatgaaaagaacgagccgaaggacagcgtt
gaaaaacagccagtggtagagaaaacagaaactgagggaacataa
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