Polypterus senegalus (gray bichir): 120525733
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Entry
120525733 CDS
T08668
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120525733 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120525733 (taf5l)
03036 Chromosome and associated proteins [BR:
psex03036
]
120525733 (taf5l)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120525733 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
120525733 (taf5l)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120525733 (taf5l)
STAGA complex
120525733 (taf5l)
TFTC complex
120525733 (taf5l)
SAGA complex
120525733 (taf5l)
SLIK complex
120525733 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
NBCH_WD40
RMC1_N
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
Nbas_N
Ge1_WD40
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
120525733
NCBI-ProteinID:
XP_039604222
LinkDB
All DBs
Position
3:complement(182447167..182517701)
Genome browser
AA seq
594 aa
AA seq
DB search
MKRMRTEQIQHTVVQYLKRRQYVDSEGALKGPKLSQTTEEMAANLTVQTESGCTSVVSSA
PCQADSQQYEIQFGRLKSFLSDADIQWSQEVMSVLYPMFVYLHLDMVHCGLKSAVDSFYS
RYHGMFLSDVDQKDIVDQLRTTLTVQDISANPKLRAFLDNKYTIHLSDKAYNYLLRYLQS
DNNIALCKILASCIQLEVTASQRIDYQLYGCSTVGAIGSSRTESSSNIDTGNMTASILQN
EAALDSLQECIKRVKDGPPSLTTICFYAFHNTDQLLNTAEVSANSKLLAAGFDSSCVKLW
SLQARKLKAEPHQVDVSRIHLACDILDDECDDEDGTGSEMKILRGHCGPVYSTTFLTDSS
GLISCSEDSSIRYWNLNTFTNTALYQGHAYPVWDIDISPCSLYFASASQDRSARLWTFSR
TYPLRIYAGHLVDVDCIKFHPNSNYIATGSADKTVRLWSTQQGNTVRLFTGHHGPVLSLA
FSPNGKYLASAGEDQRLKLWDLASGTLFKDMRGHTDSVISLSFSPDSSLIASASMDNSVR
VWDIRNTYCSTSADGSSGELVGIYTGQTSSILSVQFMACNLLLVTGTAHENQEQ
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgcgtactgagcagatccaacacacagttgttcagtatctcaaaagacgc
caatatgtggactctgaaggtgccctaaagggtcccaaactctcgcagacaacagaggaa
atggcagcaaacttaacggttcagactgaatccggatgtaccagtgttgtatcttctgca
ccttgccaagctgactctcagcagtatgagatccagtttggtcggttgaaaagtttcctc
tctgatgcagacatacagtggagtcaagaagtgatgtcagtgctttatcctatgtttgtc
tatctccatctggatatggtgcactgtggccttaaaagtgctgtagacagcttttatagc
cgatatcatggaatgtttctaagtgatgtagatcagaaagacatcgttgaccagctaaga
acaacattaacagtccaggatatttcagctaaccctaaacttcgtgcttttctggataac
aaatataccattcatctctcagataaagcctacaattatcttcttcgctacctccagagt
gacaataatattgcactttgcaaaattctagcttcttgcatacagctagaggtgacagct
tctcaaagaattgattatcaactatatggttgcagcactgttggtgcaatagggtcctca
agaactgaaagcagcagcaatatagacacgggcaatatgactgcaagcattctacagaat
gaggctgcccttgattcattgcaagaatgcattaaacgtgtaaaggatgggccgccatcc
ctcacaacaatctgtttttatgcatttcataatactgaccaactgctcaacactgctgaa
gtttcggccaacagtaaactacttgcagccggctttgatagctcatgtgtcaaattgtgg
agtttacaggcaagaaagctcaaggctgaaccccatcaagtggatgtgtccagaattcat
ttagcctgtgacattcttgatgatgagtgtgatgatgaagacggcacagggagtgaaatg
aaaattctcaggggccactgtggaccagtgtacagcactacattcctcacagacagctct
ggactcatctcttgctctgaagacagctcaatccggtattggaacttgaacacttttact
aacacagctttatatcaaggacatgcatatccagtatgggatattgacattagcccctgt
agcctttattttgccagtgcctcacaagacagaagtgcaagactgtggacgttcagcaga
acttaccctttgcggatatatgcaggtcatttggtggatgtagactgcattaagttccat
cccaactctaactacattgccactgggtcagctgacaaaactgttcgtctgtggagcact
caacaaggcaacacagtaagactgttcacagggcatcatggtcctgttttgtcattagct
ttttctccaaatggaaagtacctggcatctgccggggaagatcagaggctaaaactttgg
gacctggcgtcaggtacactcttcaaagacatgaggggacacacagatagtgtaataagc
ctgtcctttagtccagacagcagccttattgcttcagcctccatggacaattcagtcagg
gtctgggatatacgtaatacatattgcagcacatcggctgatggctcatctggtgagcta
gttggcatctacacaggacagacaagcagcatactgagtgtacagtttatggcttgcaat
ttattactggtcactggaacagcacatgagaaccaggagcagtaa
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integrated database retrieval system
