Polypterus senegalus (gray bichir): 120526064
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Entry
120526064 CDS
T08668
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120526064 (ddx1)
03016 Transfer RNA biogenesis [BR:
psex03016
]
120526064 (ddx1)
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120526064 (ddx1)
Spliceosome [BR:
psex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120526064 (ddx1)
Transfer RNA biogenesis [BR:
psex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120526064 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
PFK
Motif
Other DBs
NCBI-GeneID:
120526064
NCBI-ProteinID:
XP_039604866
LinkDB
All DBs
Position
3:254274684..254325329
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDHQEGKKGKATVTTGGAVFNKWQMNPYDRGSAFAIGADGLCCQSREVKEWH
GCRSTKGVSKGKYYYEVSCHDQGLCRVGWSTAQAALDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCFLDSDKGHVKFSKNGKDLGLAFEIPQHLKNQAFFAACVLKNAELKF
NFGGEDFKHPPKDGYVALDKAADAHVVKSKQTGSAQVSQAKNLPNAPKALIIEPSRELAE
QTLNNVKQFKKYVDNPKIRELLIIGGVAAKEQLAVLESGVDIVVGTPGRIDDLISTGKIS
LSQVRFLVLDEADGLLTAGYTDFITRVHNQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKTDRLWERLGKNHIRTDEVHAKDHTRPGAN
TPEMFSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVASEKEKVWYHVCPNRGRGCYNTRLKDEGGCTIWYNENQLLA
EIEDHLNCTVSQVETDIKVPLDEFDGKVTYGQRRATGGGLYKGHVDVLAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattttctgagatgggtgtaatgcctgagattgctcaggctgttgaagagatg
gactggctcctcccaacagacattcaagcagagtcaataccattaattcttggaggaggt
gatgtacttatggctgccgagactgggagcggaaaaactggtgctttcagcattcctgtt
attcagattgtctatgaaacacttaaagatcatcaggaggggaagaaaggcaaggcaact
gtaacaactggaggagcagtattcaacaaatggcagatgaacccttatgatagaggttct
gcatttgctattggagcagatggtctgtgttgtcagagcagggaggtaaaggagtggcat
ggatgcagatcaacaaaaggggtgtcaaaaggaaagtactactatgaagtctcttgtcat
gatcaaggattatgcagagttggttggtcaactgcgcaagctgctttagatttgggtact
gataagtttggatttggatttggtggaactggaaagaaatcccataataaacagtttgat
agctatggggaggagtttacaatgcatgacactataggatgcttcctggattcggacaaa
ggacatgtcaaattttccaaaaacgggaaggaccttggtcttgcatttgagattccacag
caccttaagaatcaggcattctttgctgcttgtgttttaaagaatgcagagctgaagttt
aactttggtggtgaggactttaaacacccccccaaagatggatatgttgcgcttgacaag
gcagctgatgctcatgtggttaaatcaaagcaaactggcagtgcacaagtatctcaggca
aaaaatcttcctaatgcccccaaggcacttattattgagccatctagggaattggctgaa
caaaccttaaataatgtcaagcagttcaagaaatatgttgataatcctaaaattagggag
cttttgattattggaggtgttgctgctaaagaacagcttgcagttcttgaaagtggggtg
gatattgtagttggaactcctggccgaattgatgacctcatatccacaggaaaaataagt
ctttctcaagttcggttcctggtactggatgaagctgatggtcttttaacagcaggatac
acagatttcatcacacgagttcataaccaaataccacaaataacatctgatggaaagaga
cttcaggtgattgtatgttctgcaactctgcattcatttgatgtaaagaagctctcagaa
aagatcatgcatttccccacctgggttgatctgaaaggagaagactcagtaccagagacc
gttcatcatgttgtggttccagtaaatcctaaaacagatcggctttgggaaagactggga
aagaaccatattcggactgatgaagttcatgctaaagatcacacaagacctggtgccaat
actccagaaatgttttccgaagctattaaaatcttgaaaggagaatatactgtgagagca
attaaagaacataagatggatcaggcaattatcttctgtagaacaaaaattgattgtgat
aatatggagcagtattttattcaacaaggaggaggacccgataaaaaagggcaccaattt
tcctgtgtctgtttgcatggagacagaaaaccaaatgaaagaaaatacaatttggaacgt
ttcaagaaacaggaagtacgatttttgatatgcactgatgttgctgccagaggtatcgat
atccatggtgttccttatgttatcaatgtcacccttccagatgagaagcagaactatgta
catcgtattggaagagtaggcagagctgaaaggatgggccttgcaatttccttagtcgca
tctgaaaaggaaaaggtatggtaccatgtatgtccaaatcgaggaagagggtgttacaac
actagactgaaggacgaaggagggtgtaccatatggtacaatgaaaatcagctgttagct
gaaatcgaagatcatttaaattgcactgtttctcaagttgaaactgatataaaggtgcct
ttggatgaatttgatggaaaagtgacatatggccagaggagggcaactggaggtgggctc
tacaaagggcacgtggatgttttggcgcctacagtgcaggaactagctgcccttgagaaa
gaggcgcagacatcctttttgcatcttggctacctgcccaaccaactgttcagaacattc
taa
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