Polypterus senegalus (gray bichir): 120527135
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Entry
120527135 CDS
T08668
Symbol
lrba
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120527135 (lrba)
Membrane trafficking [BR:
psex04131
]
Endosome - Lysosome transport
Others
Others
120527135 (lrba)
Endosome - Golgi transport
120527135 (lrba)
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
120527135 (lrba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
WD40
Neurobeachin
Laminin_G_3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
SUKH_6
EIF3I
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
120527135
NCBI-ProteinID:
XP_039606172
LinkDB
All DBs
Position
4:complement(10672990..11465214)
Genome browser
AA seq
2812 aa
AA seq
DB search
MASEENNGEGGTTSMSLNPGIPIRGIRMKFAVLAGLVEVGEVTHRDIVETVFNLLVGGQF
DLEMNFIIQETESISCMVELLDKCEKNCQAEVWSIFTAILKKSIRNLQACTDTGLIEQVL
KRIDKVDSMIADLLVDMLGVLASYSITVRELKLFFSKLQGEKGHWPPHAVKLLSVLKHMP
HKNGPDSFFSFPGRSAAAIALPPIAKWPYQNGFTFHTWLRMDPVSNINVDKDKPYLYCFR
TSKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKFDFKPQKWYMVTIVHIYNRWKNSEISC
YVNGELASYGEITWFVNTSDTFDKCFLGSSETADANRVFCGQMGAVYLFSEALNAAQILA
IYQLGPGYKGTFKYKAESDLLFAEHHKLLLYEGKLSNCIAFTYNPRATDAQLCLESSPKD
NPSIFVHSPHALMLQNVKAEVTHSVPSAIHSIGGVQVLFPLFAQLDFLQHSSDQLDTTVC
STLLAFVMELLKSSVAMQEQVLACKGFLVIGYCLEKSSKAHITRAVLELFLAFARYLSNL
QNGVHLLKQLCDHILFNPAIWIHAPAKVQLQLYTYLSTEFISTVTIYNAIRRVGTVLQVM
HTLKYYYWVVNPQDRSGVIPKGLDGPRPNQKEILSLRAFLLLFIKQLIMKDYGVKEDELQ
SILSYLLTMHEDDNLIDVLQLLVALMSEQPSTMIPAFDQRNGIRVVYKLLASKSESIRVQ
ALKVLGYFLKHLGPKRKAEVMLGHGLFSLLSERLMLQTNIISMTTYNVLFEILTEQICTQ
VIHKQHPDPDSSVKIQNPQVLKVIAALLKNSPQGPESMEVRRVFLSDMIKLFNNSRDNRR
SLLQCSVWQEWMLSLSFINPKNSEEQKITEMVYAIFRILLYHAVKYEWGGWRVWVDTLSI
THSKVTFEQHKDSLSKLFREYQRQGDEASVLGASGLIRTVSGLSSNAEDVTAHGEEEKKS
LAGSSEDTESQHITEVPSLLKEIPSKENGLLVSDCDPKPVDEKLDVLPSSPVASDGENLS
TQEKCLEPTDVPVLSPVESLEVNVDSAQLENELPVPALEQSASNSSGNSEDNILEKNSED
GYMSTENKVNGESLPSAVVEVVKEGPLESASPPPAEKNSDREQVSEKEADPVSLSDTVNT
TKENTNDEVKPSDETPKERVEINNIITSRTKEIKIARLDVSSVASDTERLELKASSSQDP
SSPTGPGLGQAAPSSVNRKDTAGSSARSTMFRIPEFCWSHMHQRLLTDLLFSIETDVQMW
RSHSTKTIMDFVNSSENVIFVHNTVHLVSQVVDNIIMASGGILPLLAAATSSTHELENIE
PSHGLSIEASVTFLQRLISLVDVLIFASSLSFTEIESEKNISSGGILRQCLRLVCAMAVR
NCLECQHHSKPGADIGRGQKTVQNLMITAKSTSAQSPVDVVTGGISPVRDTDRLLQDMDI
NRLRAVVFRDIEDSKQAQFLALAVVYFISVLMVSKYRDILEPQNERKAPQRSQSVRNSQF
KNDDASSAVSQFKDDIAKPDVEVTAEVDASLENGADLRRTDSGIEEGQASTATSEIDGNV
GSGVEPVITGPDAISEVLSTLSSEVKKPQDAQEQENKSLPMAPAAAAAAASQPRNVNVKD
ILRSLVSMPAEEIVIDPTIIPPAFLGAMGDDPVDQSLQFRSFDRSVVVAPKKTSGAPTGT
VSVATSIPAAAPAPISTGPVNDVSEVSTSEASEHITESAAGGGPANLPYVPSVSPMTEDS
ASNMSISDRLEHALEKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLVCMKSSSSV
VELVMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAED
IHKHAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGN
SSVSRPREFWRLDYWEDDLRRRRRFVRNPFGSTHPGATLKAAGEHVLTKAAPDEDVLVKG
QQSIRSQALGNQNSESEILLDVDDDTLSSIEEKDLENLTGPVSLSTVAHLVSPAVVVKGT
LSITASELYFEVDEEEDSFKKIDPKILTYTEGLHGKWLFTEIRAIFSRRYLLQNSALEIF
MANRTAVMFNFPDQATVKKVVYCLPRVGVGTNFGLPQTRRISLATPRQLYKASNMTQRWQ
RREISNFEYLMFLNTISGRTYNDLNQYPVFPWVITNYDSEELDLTLPSNFRDLSKPIGAL
NPKRAAFFSERFDTWEDDQVPKFHYGTHYSTSSFTLMWLLRVEPFTTFFLNLQGGKFDHA
DRTFSSVSRAWRNCQRDTSDVKELIPEFYYLPEMFVNSNDYSLGVMDDGTVVSDVELPPW
AKTPEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAIRALNVFYYLTYEGAVNLS
SISEPVLREAVEAQIRSFGQTPCQLLIEPHPPRSSAMQVYLLLQTPMMFTEQMQQDVIMV
LKFPSNSPVAHVAANTQPGLTGPAVITVTANRLFAVNKWHGLSGHQGTVQDQPYQLPVEI
DPLIASNANMHRRQITDLLDQSIQIHSQCFVITADNRFILVCGFWDKSFRVYSTDSGKLT
QIVFGHRDVVTCLARSESYIGGDCYILSGSRDATLLLWYWNGKHNGIGENPGTEFTTPRT
ILTGHDCEITCATVCAELGLVISGSKEGPCLIHSMNGDLLRTLESPENYMQPRLVQCSTE
GHCLVYYEKGSFCMFSINGKLLGHMEVEENIKAILMSRDGQYLLSGGDAGVLTIWQIHDL
KQLFVYPGCDAGIRSMAMSHDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8439 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaggagaataatggtgaagggggcaccacgtccatgtcgctgaacccaggg
atccctattaggggaataaggatgaagttcgctgtgttggccgggttagtggaggtcgga
gaggtcacacacagggacatcgttgagacagtcttcaatctgcttgttggcgggcagttt
gacctagaaatgaatttcatcattcaagagactgaaagtatctcttgtatggtagagctg
ttggataagtgtgaaaagaactgtcaagctgaagtgtggagcatctttactgccattctg
aagaaaagcattcgcaatcttcaagcctgtacagatacaggtctcattgagcaagttctg
aaaaggattgacaaagttgacagtatgattgcagatctccttgttgatatgctgggagtc
ttggcaagctacagtatcactgttcgtgagcttaaactgtttttcagcaaactgcaggga
gagaaaggacattggcctccgcatgctgtgaagttgctttctgtgttgaagcatatgcca
cacaaaaatggccctgattcatttttcagctttcctgggaggagtgctgcagctatagct
ttacctcccattgccaaatggccataccaaaatggattcactttccacacgtggctgcga
atggatcctgttagcaatatcaatgtagataaggataaaccttatttatactgtttccgg
acgagtaaaggacttggatactctgcacattttgttggaggatgtctaattgtgacctca
ttaaaatctaaagggaaaggattccagcactgtgttaagtttgacttcaagccccaaaag
tggtacatggtgactatcgtacatatctacaaccggtggaagaatagtgaaataagctgc
tatgtgaatggggagcttgcctcatatggtgaaatcacatggtttgtcaacacaagtgat
acattcgacaaatgtttcctgggatcatctgagactgctgacgctaaccgagtgttttgt
ggtcaaatgggcgctgtctacctcttcagtgaagcactcaacgcagctcagattttggcc
atttatcagctgggtccaggctacaagggtacctttaaatataaggcagaaagtgaccta
ctttttgctgagcatcataaacttttgctgtatgagggaaagctgtctaactgcattgcg
ttcacatataacccacgagctacagatgcccagctctgcctcgagtcttctcccaaagac
aatccatctatctttgtacattcacctcatgctctaatgctgcagaatgtaaaagccgaa
gtgacgcattctgtgccaagtgctattcattccatcggaggggtacaggtactgtttcca
ctgtttgcacaacttgattttctccagcattcttctgaccaactagataccacagtatgt
tccactctgctggcttttgtcatggagctactgaagagctctgttgctatgcaagagcag
gtcctagcttgcaagggctttcttgtgattggctattgcctggaaaagtcttccaaggcc
catatcaccagggctgtgctggagctgttccttgcttttgccagatacctcagcaaccta
cagaatggtgtccacctgctcaaacagctctgtgatcacattcttttcaatcctgctatc
tggattcatgctccagctaaggtgcaactacagctgtatacctacttatctactgaattt
atcagcactgttactatatataatgcaatccgcagagttggaacagtgctgcaagtaatg
catacactgaaatattactactgggtagtaaatccccaagatcgtagtggtgttattcca
aaaggcctggatggtcccagaccaaaccagaaggaaatactttctctgagagcattcctc
ttgctgtttataaagcagttaataatgaaggactatggagtgaaagaagatgagttgcag
agtattctcagctatttgctgacaatgcatgaggatgacaatttaatcgatgtgcttcag
ctgttagtggcactgatgtcggaacaaccaagcactatgatccctgcctttgatcaacgc
aatggaatccgtgttgtgtataagttacttgcttcaaaaagtgagagcattcgagtacaa
gcattgaaagtgttgggttactttctgaagcacttggggcccaaaagaaaagcagaagtt
atgcttggtcatgggttgttttcattgttgtctgaacggctcatgctgcagaccaacatt
atctcaatgactacatataatgtgctctttgagattcttactgagcagatttgcactcag
gttatacataaacaacatcctgatcctgactcttcagtaaagattcaaaatccacaagtt
ttgaaggtcattgcagcacttctgaagaattctccacaagggccagagagtatggaggtt
cgacgagtctttttgtcagacatgatcaagcttttcaacaacagtcgcgacaatcgaagg
agtttgttgcagtgctcagtatggcaagaatggatgctgtctcttagcttcattaacccc
aagaactcagaggagcaaaagataacagaaatggtgtatgcaatcttccgaattctgtta
taccatgcagtcaagtatgagtggggaggctggcgtgtctgggtggatacactttcaatc
actcactccaaggttacttttgaacagcacaaagatagcctttcaaagcttttcagagaa
taccaaagacaaggtgatgaagcatctgtgcttggagccagtggtctgattagaactgtg
tctggtttgagcagcaatgcagaagatgtaacagcacatggagaagaggagaaaaaaagc
cttgcaggttcctcagaggacacagagtctcaacatataactgaagtgccttccttatta
aaagaaataccatccaaagaaaatggtttattggtttcagactgtgatccaaaacctgta
gatgaaaaattggatgtgctgccttcatctcctgtggcttctgatggtgagaacctctca
acacaagaaaagtgtctggaaccaacggacgttcctgttttatcaccggttgaatcctta
gaagtgaacgttgactctgcacagcttgaaaatgagttgcctgtacccgctttggagcaa
tctgcatctaatagctctggaaactctgaagacaacattttggagaaaaactctgaagat
ggttatatgtcaacggagaacaaagttaatggggaatctctaccatcagctgtagtagaa
gtggtcaaagaaggccccttggaaagtgcatcaccacctcctgcagaaaaaaattcagat
agagagcaagtgtctgaaaaagaagcagacccagtgagtcttagtgatacagtaaataca
acaaaagagaatacaaatgatgaagttaaaccttcagatgaaacaccaaaagaaagggtt
gaaataaataacattattacgtcaaggaccaaagagataaaaatcgcaaggcttgatgtt
tccagtgttgcatcagatacagagaggcttgaactgaaagctagttcaagtcaagatcca
tcatctccaactggacctggtttaggccaggcagcaccctctagtgttaatagaaaggat
acagccggctcttctgcaaggtcaacaatgtttcgaattccagagttctgctggtctcat
atgcaccagcgactgctaactgatctgctgttttcaattgagactgatgtgcagatgtgg
agaagccactccacaaaaaccattatggactttgtgaacagcagtgaaaatgttatcttt
gtgcataacactgtccacttggtctcacaagttgtggacaatattatcatggccagtggt
ggaatattaccccttcttgctgctgccacctcatcaactcatgaattagaaaacattgag
ccatctcatggcctttccattgaagcttctgttactttcctccagaggctgattagcctt
gtagatgtgctgatatttgctagctcgctaagctttacagagattgagtccgaaaagaac
atttcttctggaggaattctgaggcagtgcctaagattagtgtgtgctatggctgtaaga
aattgtttggaatgccaacatcactcaaagcctggagcagatattggcaggggacaaaaa
actgtgcagaacttaatgataactgcaaaatcaacctctgcacagagtccagttgacgtt
gtgacaggtggtatttcccctgtaagggacacagaccgattactccaggacatggacatt
aaccgccttcgagctgtggtcttcagagatattgaggacagcaagcaggctcagtttcta
gctttggcagtggtatatttcatttcagtgctcatggtttcaaagtacagggacatctta
gaacctcaaaacgagaggaaagcaccacaacgcagccagtccgttagaaattcccagttc
aaaaatgacgatgcatcatctgcagtgtctcaatttaaagatgacattgcaaaaccagat
gtggaagttactgctgaagttgatgcaagcttagaaaatggtgctgatttaaggaggaca
gattctggtatagaagaagggcaggcttccactgcaactagtgaaattgatggtaatgtt
ggatctggggttgaacctgtgatcacaggacctgatgctatcagcgaggtcttgtctacc
ctttcgtctgaggtcaagaagccgcaggatgcacaagaacaagagaacaaatccctgcca
atggcgcctgccgccgctgctgccgctgccagtcagccacgaaacgtgaatgttaaagat
attcttcgaagtttggtcagcatgcctgcagaagaaatagtgatagaccctacgattatt
ccacctgcatttcttggtgctatgggggatgatcctgtcgatcagtctttacagttcaga
tcgtttgacaggagtgttgttgtagctcccaagaagacgagtggagcacctaccggtaca
gtatctgtggccaccagtataccggcagcagccccagctcccattagtactggacctgtt
aatgatgtcagtgaggtctcgacttcagaggcatctgaacacattacagaatctgcggct
ggagggggaccagcaaacctaccatatgttccctcagtgtccccaatgacagaagattca
gcttcaaatatgagtatttctgatagactggaacatgctcttgagaaagcagcaccattg
ctacgagagatttttgtggactttgcaccatttctttctcgtacacttctaggaagccat
gggcaggaactacttattgaaggtacaagtttggtctgcatgaagtccagcagttcagtt
gtggagttagtcatgctgctttgttcacaggagtggcagaactcaatccagaagaatgct
ggtttggcctttattgaactcgtcaatgaaggaaggttgttaagccataccatgaaggat
cacctggtaagagttgcaaatgaggcggagttcatactcagcagacagagggcagaagat
attcacaaacatgctgagtttgagtctcactgtgcccaatactcagctgaaaagagagat
gaagaaaaaatgtgtgaccacttgattcgagctgccaaatacagagaccacgtcacagcc
acacaattgatacagaagatcatcaacattttgactgacaaacatggagcctgggggaat
tcgtctgttagtcgtcctcgtgagttctggcgccttgactactgggaagatgacttgcgg
cgccggcgacgttttgttcgcaacccgtttggatctacacatcctggagctacgctaaag
gcagctggagagcatgtgctgaccaaagctgctccagatgaagacgtcctggtgaaaggg
cagcagtcaatcagaagccaagctctgggaaatcagaactcggagagcgagatcctgctg
gatgtggacgatgacaccctctcgtccattgaggagaaggacctggaaaaccttacgggt
cccgtaagcttaagcactgtagctcatctggtttctccagcagtagtagttaagggcaca
ttgtccatcacagcatctgaactctacttcgaggtggatgaagaagaagatagctttaag
aaaatcgatccaaagattctcacctacactgaaggactccatggaaaatggctcttcaca
gagattcgtgcaatcttctcaaggcgctatttgcttcagaattctgctttggaaatattc
atggcaaacagaactgctgtcatgttcaattttccagaccaggctactgtcaagaaagtt
gtttactgtctgcctcgtgtaggcgttggaacgaattttggcttaccgcagacaagacgg
atttcattggcaacccccaggcagctgtataaagcttctaacatgacccagcgctggcaa
agaagggagatttcaaactttgaatacctcatgttcctcaacactatctctggacgtaca
tacaatgacttaaaccagtacccagttttcccatgggttattaccaattatgattcagaa
gagctggatttgacactccccagcaatttcagagatttgtccaagccaattggagcactc
aatccaaagagagcagcatttttctctgagcgctttgacacttgggaagatgatcaagta
ccaaagtttcactacggcacccattactcaacttccagcttcacacttatgtggctttta
agagttgagccgttcacaacatttttcctaaatttgcaaggaggaaagtttgaccatgcg
gatagaaccttttcttctgtgtcaagggcttggcgtaactgccagagagacacttctgat
gtgaaggaactaatcccagaattttattatcttccggagatgtttgtcaactctaatgac
tacagtctgggagtgatggatgatggaacggtggtgtctgatgtcgaacttccaccgtgg
gctaaaaccccagaagaatttgttcgcataaatcggctggccctagaaagtgaatttgtc
tcctgccagcttcatcagtggattgatttaatttttggatataagcagcaaggaccagag
gccatccgggccctcaatgtcttctactatctcacctatgaaggggcagtgaacctgagc
tcaatttctgaacctgttctcagggaggctgttgaagctcagattcgaagttttggacaa
accccttgtcagctgctaatagagccacatccccccaggagttctgccatgcaggtgtat
ctcctcctgcagacgccgatgatgttcactgagcagatgcagcaggacgttatcatggtg
ctcaagttcccatccaactcccccgtggctcatgtggctgcaaacacacagcctggacta
acaggacctgctgtcatcaccgtcacagctaacaggctcttcgcagtgaacaagtggcac
gggctcagtggccatcaaggcacagtccaggaccagccctaccagctgccggtggaaatc
gatcctttgatagcctccaatgccaacatgcacagaaggcaaatcactgaccttttggac
caaagcattcagatccattcccaatgttttgtgatcacagctgacaaccgattcatcctg
gtctgtggcttctgggataagagtttccgtgtctattccactgactcaggtaaactgact
cagatagtgtttgggcatcgagatgtggtgacgtgcctggccaggtctgaatcgtacatt
ggcggagactgctacatcctctcgggatcccgggatgccacactgcttctctggtattgg
aacggcaagcacaatggcataggtgaaaacccaggcactgaattcacaacaccacggacc
atactgactggacatgactgtgagatcacatgtgcaacggtgtgtgcagaactgggcctg
gtcatcagtggctccaaagagggtccctgtttgatacattccatgaatggagacctgttg
cgtaccctggaaagtccagaaaactacatgcagccacgtcttgtccagtgctcgactgaa
ggacactgtttggtctactatgaaaagggatcgttctgcatgttcagtataaacggaaaa
ctgttgggtcacatggaagtggaagagaatatcaaggcaatactgatgagccgagatgga
caatacctgctgtcaggaggcgatgctggagtgctgacgatttggcagatccacgatctc
aagcagctctttgtatacccaggttgtgacgctgggatcagatcaatggcaatgtcacat
gaccaaaggtgcatcataactggcatggcgtctgggagcattgtactgttttacaacgat
tttaaccgatggcatcacgagtatcagacgagatactga
DBGET
integrated database retrieval system
