Polypterus senegalus (gray bichir): 120527196
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Entry
120527196 CDS
T08668
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120527196 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120527196 (mtrex)
03041 Spliceosome [BR:
psex03041
]
120527196 (mtrex)
03009 Ribosome biogenesis [BR:
psex03009
]
120527196 (mtrex)
03016 Transfer RNA biogenesis [BR:
psex03016
]
120527196 (mtrex)
Enzymes [BR:
psex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120527196 (mtrex)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120527196 (mtrex)
Spliceosome [BR:
psex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120527196 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
120527196 (mtrex)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
Helicases
120527196 (mtrex)
Transfer RNA biogenesis [BR:
psex03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120527196 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
120527196
NCBI-ProteinID:
XP_039606286
LinkDB
All DBs
Position
4:24894810..24999959
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFEEESSSGKKRKTEDSNAKTGKSQHGKPKIDVTGVSSRGKRDIEDDGT
NDGTSEVVFGKKSKLETISAEDVILTELMPRVKVQQVETVEGCTHEVALPAEEEYIQLKP
RQGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQACHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQVSKLDFNTDDEKKLVEEVFNNA
IDCLSDEDKKLPQVENVLPLLKRGVGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPVV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKVKT
LEEQYNAIEIPSEESVVTYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKKDED
DFGWGVVVNFSKKSNVKATTGELDPLYVVEVLLHCSKESVKNAATEAAKPVKAGEKGEMQ
VVPVMLHLLSAISSVRLYIPKDLRPFDNRQSVLKSIQEVHKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKVEAFEHRMYSHSLHNDPNLESVYNLCEKKAQIAGDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSLDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTSEQATA
LLSCFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEEQYLNSFRPHLM
DVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
AKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatttggggatgatctgttcagtgtgttcgaagaagaaagctcaagtggg
aagaaacggaaaacagaagacagcaatgccaaaacggggaaatcacagcatggaaaacct
aaaattgatgttactggagtttcttctagaggaaagagagatatcgaagatgatgggaca
aatgatgggacaagtgaagttgtatttggcaagaagtcaaaacttgaaaccatttctgct
gaggatgttattctgacagagcttatgccaagagtgaaagtgcaacaagttgagacagtg
gaaggctgcacacatgaggttgctttgccagctgaagaagaatacatccagttgaaacca
cgtcaaggaaaagcagcaaaggagtatccattcattctggatcctttccagagagaggca
attttatgcattgacaataatcagtctgtgttggtgtctgcacatacatcagcgggaaaa
actgtgtgtgctgagtatgctatagcgcttgctctgagagaaaagcagagagttattttc
actagtcccatcaaggccttgagcaaccaaaagtaccgtgaaatgtatgaagaatttcag
gatgtgggtctaatgactggtgatgtgacgattaatcctacagcttcatgtctagttatg
acaacagagattttaagaagcatgctatatagaggatctgaagtgatgagagaagttgca
tgggtcatatttgatgaaatccactatatgagagattcagaacgtggtgtggtatgggag
gagacaattattttgctaccagacaatgttcattatgtgtttttatctgctaccattcct
aatgcacgtcagtttgctgaatggatatgtcatcttcacaaacaggcttgtcatgtaatc
tacacagactatcgacctacaccgttgcaacattatatttttccagcaggaggagatggg
cttcacttggtagtagatgaaaatggagaattcagggaagataacttcaatactgcaatg
caagtgttgagagatgctggtgatttagcaaaaggtgatcaaaaaggccgcaaaggagga
accaaagggccatcaaatgtctttaaaattgtgaagatgattatggaaagaaacttccag
cctgtcattatattcagtttcagtaaaaaagattgtgaagcttatgctttgcaggtgtca
aagctagacttcaatactgatgatgaaaagaagcttgttgaagaggtcttcaataatgct
attgattgtttatctgatgaagataaaaaactcccacaggttgaaaatgtattgccattg
ttgaaaagaggtgtgggcattcatcatggtggccttcttcccatcctcaaagaaactatt
gaaattttgttttctgagggactattaaaggccttgtttgccacagaaacatttgccatg
ggaattaacatgccagccagaacagttctattcacaagtgcacgcaaatttgatgggaaa
gattttcgatggattacatctggtgaatacattcaaatgtctggacgagcaggcagacgt
ggcatggatgaaagaggaatagttattttcatggttgatgagaaaatgagtccagtagtt
gggaaacagttacttaagggttctgcggatcctctgaatagtgcttttcatttgacttac
aatatggtgttaaatttgcttcgtgtggaagaaatcaatccagaatacatgctggagaaa
tccttctaccagtttcagcattacagagctgtcccaggggtagtggaaaaggtgaagaca
ctggaggaacagtataatgccatcgaaatcccaagtgaagaaagtgtagttacttattac
aagatacgacaacagctggccaaacttggaaaggaaattgaggagtatatacacaagccg
aagtattgtttaccttttctgcagcctggtcgcctagttaaggtaaaaaaagatgaagat
gactttggttggggagtagttgttaacttttcaaaaaagtcaaatgtcaaggcaaccact
ggtgaattggacccgttatatgtagtggaagtgctgctacactgcagcaaggaaagcgtg
aaaaatgctgcaacagaggctgcaaagcctgtcaaagcaggggagaaaggagagatgcag
gtggtcccagttatgctacatttgctcagtgcaatcagctctgtcagattatatattccc
aaagacctgcgaccttttgacaacaggcaaagtgttcttaaatccattcaggaagtccac
aaacgttttccagacggagttccactgcttgatccaattgatgatatgggaattaaggac
caaggcctaaagaaagtaattcaaaaagtggaagcatttgaacacagaatgtattctcat
tctctacataatgatccaaatcttgaatcagtatacaatctctgtgaaaagaaagcccag
attgcaggagatataaaggctgcaaagcgggaactgaagaaagcccggactgttttgcaa
atggatgagctcaaatgtcgaaaaagagttcttagaagattaggctttgcaacttcttta
gatgtcattgaaatgaaggggagagttgcctgtgaaataagcagtgccgatgagttgctt
ctaactgagatggtattcaatggacttttcaatgaccttacttcagaacaagcaactgct
ttactcagctgttttgtatttcaggaaaatgcaaatgaaatgcccaaacttactgagcag
cttgctggtcctctgagacaaatgcaggaatgtgctaaacggatagctaaggtgtctgca
gaagccaagctagaagttgatgaggagcagtacttaaattcatttcgccctcatttaatg
gatgttgtttacacatgggctaacggatccacctttgctcagatatgtaaaatgacagat
gtttttgaaggtagcattattcgttgtatgagacgcctagaggaactgcttcgacaaatg
tgccaagctgcaaaggcaattggaaacactgaacttgaaaacaaatttgcagaaggtatt
gcaaagatcaagagggacattgtgttcgctgccagtctttatttatag
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integrated database retrieval system
