Polypterus senegalus (gray bichir): 120527403
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Entry
120527403 CDS
T08668
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120527403 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120527403 (nup54)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120527403 (nup54)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
ToxA_N
XhlA
Motif
Other DBs
NCBI-GeneID:
120527403
NCBI-ProteinID:
XP_039606713
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All DBs
Position
4:63423694..63494979
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AA seq
605 aa
AA seq
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MAFNFGGTGASTTAGATPFTFGSFAAKTTASTGFGFGSTTTTAPSGFGSLAAPGFGTTTT
ASSTGFGFGGTGTGFGGLGTTNTTAGGFNFGGFGLNSNAAAVSFNIGNFGAPTTAATVFN
FGNSLASAGAFGGFGAATTTTAPGSAFSFTTPSSTGGLFGGTPNKSGFASFGAGANTGGT
GLAGLGFGSFSTQPQQQTSGGLFGQAQPPVQTNQLYNTASALSAPTLLGDERDAILAKWN
QLQAFWGTGKGYFHNNLAPVEFPQENPFCRFKAVGYNCMSDSKDEDGLVVLIFNKKEADV
RNQQQQLVESLHKVLGGSQTVTVNVEGVKTLPDDQTEVIIYAVDRSPNGTSKRILSTILF
NYLEQANIKQQLQQLGVTLTMTKIALSPTQVKQLLQNPLAGVDPIIWEQAKVDNPDPEKL
IPVPMVGFKELLRRLKIQEQMTKQHQTRVDIISDDISELQKNQATTVAKIAQYKRNLMDL
SHRALQVLIKQEIQRKRGYAIQVDEEHLRVQLDTIQCELNAPTQFKGRLNELMSQIRMQN
HFGTVRSEERYNIDTDLLREIKQHLKLQQEGISHLISVIKDDLEDIKLIENGLQDSGHMR
GGIFS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaatttcggcggcacaggcgcttctacaactgctggcgccactccttttaca
tttggctcatttgctgctaaaacaacagcatcaactggttttggctttggctcaactacc
acaacggccccttctggatttggcagtcttgctgcaccaggctttggaaccacaactaca
gcctcatcaacaggttttggatttggaggaacaggaacaggatttggcggcttgggtaca
actaacaccactgctggtgggtttaattttgggggtttcggattaaattctaatgcagca
gctgtcagctttaatattggaaactttggtgcccccacaactgcagctactgttttcaat
tttggtaatagcctggctagtgcaggtgcatttgggggttttggagcagctacaacgacc
actgctccagggtctgctttcagtttcaccactccctccagcacaggaggactttttggt
ggtactccgaacaaaagtggctttgctagttttggtgctggagcaaatactggtggtact
ggccttgctggcttaggatttggaagctttagcacacaaccacagcaacagacttcaggt
ggactttttggacaggcacagccccctgttcagaccaatcagctttacaacactgccagt
gccttgtcagccccaactcttctaggtgatgagcgtgatgctattttggctaaatggaat
cagttacaagctttctggggaacaggcaaaggttatttccataataaccttgcaccagtg
gagtttccacaggaaaatcctttctgtagatttaaggctgttggatataattgcatgtca
gacagcaaagatgaagatggccttgttgttttgatcttcaataagaaagaagcagatgta
aggaatcaacaacaacaacttgttgaatctcttcataaagtgcttgggggaagccagact
gtgactgttaatgttgaaggtgttaagacattgccagatgaccagacagaagttattatt
tatgctgtagatcgttccccaaatggaacttcaaagagaattctatcaaccatacttttc
aattatttggagcaagcaaacataaagcagcagctacagcagctgggagtgacgcttact
atgaccaaaatagcactctccccaacacaggtgaaacagcttctgcaaaacccacttgca
ggcgttgatccaattatttgggagcaggccaaagtggacaacccggatccagaaaaatta
attccagtgccaatggtaggatttaaagaattacttagaaggctaaaaattcaagaacaa
atgactaaacagcaccaaacgagggtggatataatatctgatgacattagtgagcttcag
aagaaccaggccacaacagtagcaaagattgcccagtacaaaaggaatctaatggatctg
tctcatagagccttacaggtattaattaagcaagaaatacaaagaaaacgtggctatgcc
atacaggttgatgaagaacatttgagagttcagctggacacaatacagtgtgagctcaat
gccccaacccagttcaagggccgtcttaatgaacttatgtcccagatacgaatgcagaat
cactttggaactgtgcgctcagaagaacgttataatattgatactgatctcctacgagaa
attaaacagcacctaaagctgcagcaggaaggaataagccatttgataagcgtcattaag
gatgacctggaggatataaagctgatagaaaatgggcttcaagacagtggacacatgaga
ggaggaatattcagctga
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