Polypterus senegalus (gray bichir): 120527604
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Entry
120527604 CDS
T08668
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120527604 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120527604 (fip1l1a)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120527604 (fip1l1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
120527604
NCBI-ProteinID:
XP_039607136
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Position
4:114727544..114825496
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AA seq
555 aa
AA seq
DB search
MSAEEEDKAMVTDDTVTAGDEEEEWLYGDENENKQEEESAPVTTSTVVTPAKEEATGNGE
VKQDAVEEEEDADSDSDDDDDDVRVTIGDIKTGAPQYAAYGGTPVNLNIKSTGRPYGSVG
NKAKGVDLDAPGNINGVPVIEMDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQK
RLRLGLEVVSSSSGTSKIMVQQGRTGNSEKEVVVSTAKGDFTSPSNVFKSTNPTSRISPT
HWTGAQSQDLSFYSKVSAAIDVIGGQTDAISRVVGRRRHNDSNNIQVISEHSASDAEPSS
TKLPPFFPPGPLPPNIPPPPFLPPPPNVSSAPPLIPPPRLPITVPPPGFPPPPGGPPPSL
IPTLDGGHAGNYDGRNLPPYPFSGGYPHLPGNITSWSNIIDNSKQWDYYSRRDKERERDK
ERDRERPRERGHDRERERERERERERDHSPSSMVYNSDEERFRYREYSERSYERHRERGS
REKEDRHRERRHRDKEESSRHKSSRSSSRRRHDSEEGGEGHRRHKHKKSKRSKEGKEAND
EHATEQESTEAGALE
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaagaggaggataaagcgatggtgacggatgatacggttacagccggtgac
gaagaagaagaatggctttatggggatgaaaatgaaaataaacaagaggaggaatctgct
cctgtcaccaccagtacagttgtcacacctgctaaggaggaagccactggaaatggggaa
gtgaaacaggatgcggttgaagaggaagaagatgctgatagtgacagtgatgatgacgat
gatgatgttcgtgttactattggggatattaaaactggtgcacctcaatatgcagcgtat
ggtggaacaccagtaaatttaaatattaagtcaactgggagaccgtatggttcagtggga
aataaagctaaaggagttgatctcgatgctcctggaaatatcaatggtgttccagtcatt
gaaatggacttggattcttttgaagacaagccttggaggaaaccaggtgctgacttgtct
gattacttcaactatggatttaatgaagatacatggaaagcctactgtgaaaagcaaaaa
cgactaagattgggtcttgaagttgtatcttcttcctctggaaccagcaaaattatggta
caacagggcagaactggaaattctgaaaaggaagttgttgtgtcaacagcaaagggtgac
tttacttctcctagcaatgtctttaaatcaactaatccaacatccaggatatcgcccact
cattggacaggagctcaatctcaagatttgtcattttattcaaaagtttctgcagcaatt
gacgtgattggtgggcagacagatgccatcagccgtgtggtgggaagacgccgtcataat
gatagcaataacattcaggtcatttctgaacattctgcctcagatgcagagccatcatct
acaaagctgcctccattctttcctcctggtccactgcctcccaatatccctccacctcca
ttcttacccccgccacccaatgtcagcagtgcaccacctctgattcctcctccaagactc
ccaattactgttcctcctccaggatttccgccaccaccgggaggtccaccaccttctctt
attccaactttggatggcgggcatgctgggaactatgatggtcgcaaccttccaccttat
ccatttagtggcggatatccacatctcccaggaaatataacatcttggtctaatataatt
gataactcaaaacaatgggactactattcaagaagagacaaggagcgagaaagagataag
gaaagggaccgtgagaggcccagagaaagaggccatgatagagaaagagagcgggaaagg
gaacgtgagcgggaacgagatcatagtccttcttccatggtatacaacagtgatgaagag
cggtttagatacagagagtattcagagagaagctatgagaggcatagggaaagaggcagc
agggaaaaagaggatcgacacagagaaagaaggcaccgggataaagaggagagcagtcgg
cacaaatcttcacgaagcagcagtaggcggcgtcatgatagtgaagaaggcggtgaaggc
catcgaagacacaagcacaaaaaatccaaaagaagcaaagaaggaaaggaagctaatgat
gaacatgcaactgaacaggagagcacagaagctggggccttggaataa
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