Polypterus senegalus (gray bichir): 120527788
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Entry
120527788 CDS
T08668
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120527788
Membrane trafficking [BR:
psex04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
120527788
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
SH3_1
TPR_8
TPR_2
SH3_9
TPR_1
SH3_2
TPR_MalT
Cdc6_lid
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
120527788
NCBI-ProteinID:
XP_039607539
LinkDB
All DBs
Position
4:164367429..164436461
Genome browser
AA seq
1376 aa
AA seq
DB search
MKPKSAAGVSFYCFPFVPRSIHNTQGGGVHHLKRKTSRKKRQSTATQKQSSEMETETARQ
RSSLVGTGGKPRIEGSECPVPSVSEVASEAAAAAAGGEAEAAHDGQESFYVSLQEDLEPA
ALSDDTCPTAISIKLVMVRKKNGLPDSDLQEILREKMRILEHESGEVTAVFSELSARLLA
IISDEDLIIITFRTVEEIWKFSTYYSLGLVNHCIENLFLEQVFLLNHLDEDDAGITVQVN
EEGLHLMYCGILQQEGTLFARFTGKLLQDLTDGEPHLKYNDVVIVDTPTTGSHWIVQSLS
NASKAQVAKSSLEPLIPFSQVLFKNFAENLWICCRNDQFDFPYQAATGFCLATSDYEANG
PDELSFQTGDSFEIVGYLVSCLEWFVAKHEDTGQTGLVKTCHVAPCNSTYKPADVVLDEE
LNSLLKLQGHKEANFITFLDKILETESSTVFKMDNLVGTQPSGMLCQKNGQMCSKKIELE
LQKTRSNYWYMELTKKRLCEDQHLGSSLSSQLLEQTSDQHFVIANTDEDSGDEFQDLIMF
LNSANYKNDYRNLYDFSFSFLSSLFSGYGTEEELVNYLGKARETARKTKKLWAQSRICFL
LGKLCAKKCKFSQARVYFEEAISVAKGYFTDMFFLIAIYANLSVIYLKQKNKEKCSAIFE
RISALCFGVCNYICSTTMESEILKHILKKAILSENTFAEARACFLLAKHYISINQEDRAL
PFIERLQLLAENSRHNSLPRSYFLNLGLMYDQKCLPNLSVSCFKQVSLHPSSKLTECLVA
ASLIVKNTPQQSNVGKDVIWIPVQMISCLKRIISLAEKAGELKLVRAVRLCLSQLFQYYK
LFNKAIHYLQQFTDSTFNNNSVLGIDNLLCLAWLHILNGQFGEALNILDELLQCPGMKKG
TLQEGAIYNLHAIALRHIGSIKHAMDSYHKAQQICELLGSRQNHAVVQANLGFLCITAKF
MGLAELYLTKSVKLFSEQQNNIFEIHFIKVLLEVGLYYVGQNLKDKAKFFYEWALLIAIM
GNHNESQLQAAQLLCYFYREVCPNEAQCIIYSEYLLLLAQKTGDKVLEGETLETISQLYF
GLGTERAYRSSLEYTKRSLGIFIDLKKKEKEAFGWLQAGKIYYILRQNELVDLYMQVAQD
AGSSTGNVKFMLELYEAAGDVFFNGSWDRDRAITFYRDQALPLAIELKDLKAQMRLSNKI
AELLLILKTFREAVEFVQIALSISIKIGDHLNERVSYHRLASVYYLLDQFELTEHYYLKA
LSLCSSPLQFDEEALYYVKVYQILGDITFYKLKDPYDAAGYYHLALAAAMDLGNKRSQLK
LCTRLATIYHNFVINRELSLFFYQKARGFATDLNIRRINLSPDHLFQTIANKQFRA
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaaaagcgcggctggcgtatccttttactgtttcccgtttgtcccgcgcagt
attcataacacacaagggggcggggttcaccacttaaaaagaaagaccagtaggaaaaaa
agacaaagcacggcgacacaaaaacagagctccgaaatggaaacggagacggcacgacag
cgatcttccctagttggtaccggcggaaagccccgcatagaaggcagcgaatgtcccgtt
ccgtcagtgagcgaagtggcgagtgaagccgctgctgcagcagcaggtggtgaagcggaa
gcggcgcatgacggccaggagagcttctatgtatccctgcaagaagatctggagccagca
gctctttcagatgacacttgtccaacagccatttccattaaactagtaatggtgagaaag
aagaatggtcttcctgacagtgatctacaggaaatactaagagaaaagatgaggattttg
gaacatgaaagcggagaggtcacagcagtttttagtgagctgtccgctagactgttggct
attattagtgatgaagatctgattataatcacttttcgaactgttgaagagatatggaag
ttttctacatattattcacttggccttgttaaccactgcatagagaatttattcttggaa
caagtctttttgcttaatcatttagatgaagatgatgctggtattacagtccaagtaaat
gaggaaggtttacatttaatgtactgtggtatcctacaacaagaaggtacactgtttgca
cggttcacaggaaaactacttcaagatttgacagatggtgaacctcacttgaagtacaat
gatgtggtgattgttgatactccgacaactggatctcattggatagtacagtcattgtcc
aatgcttcaaaggctcaagtagctaagtcttccttggagccgttaataccattcagtcag
gtcctattcaaaaactttgcagaaaatctatggatatgctgcaggaatgatcagtttgat
tttccataccaagcagctacaggtttttgcttggctacttcagattatgaagccaatgga
ccagatgaacttagcttccagactggagattcttttgaaattgttggctatcttgtttca
tgtttggaatggtttgttgcaaaacatgaagatacaggtcaaactggactagtaaagact
tgtcatgtagcaccatgtaactctacctacaagccggctgatgttgtccttgatgaagaa
ctgaattctctgcttaaattacaagggcataaagaagcaaatttcatcactttcttggat
aaaatattggagacagagagtagcacagttttcaaaatggataatctagtgggaacacaa
ccatctggaatgctttgccaaaagaatggacagatgtgcagcaaaaaaatagaactggaa
ttacagaaaacaagaagcaattactggtacatggaattaaccaaaaaaagattatgtgaa
gaccaacatttaggttcatctcttagctctcagctgttggaacagacatcagatcagcat
tttgtaattgctaacacagacgaagattctggtgatgaattccaggacttgataatgttt
ttaaatagcgccaattacaagaatgattatcggaacctttatgacttctctttttccttt
ctcagttcattattttctggatatggaactgaggaggagctagtaaactaccttggaaaa
gcaagagaaacagcgagaaagacaaaaaagctctgggctcagtcaaggatatgtttcctt
cttggcaaactgtgtgcaaaaaaatgtaaattctcccaagcaagagtctactttgaggag
gccattagtgtggctaaaggatattttacagatatgttttttttaattgctatctatgca
aacttatctgtcatatatttaaagcagaagaacaaagagaaatgttctgcaatttttgaa
cgaatctccgccttatgctttggagtttgtaactacatttgtagtacaacaatggaatcc
gagatactcaaacatattttgaagaaggcaattttgtctgagaatacatttgctgaagca
agagcttgcttcctgttagcaaagcattatatctcaattaaccaggaagacagagctcta
ccatttattgaaagactgcaactactggcagagaactcaaggcataattcacttcctcgc
agctattttttaaatttaggtttaatgtatgatcaaaaatgtcttccaaatttatccgta
agctgctttaaacaagtttctttacaccccagtagcaaactcactgaatgtttagtagct
gctagccttatagtgaaaaatacaccacagcaaagtaatgtgggaaaagacgtcatatgg
attccagtacagatgattagttgcctaaagcgaatcatttctttggctgaaaaagctggt
gaactaaagctggttagagctgtccgcttgtgtttatcacagttgtttcaatattataag
ttgtttaacaaagcaatacattacttgcaacaatttacagatagtacttttaacaacaat
tctgttcttggaatagataatttactttgccttgcatggctacacattttaaatgggcag
tttggggaagctttaaatattttggatgaacttctgcaatgtccaggtatgaagaaaggt
actctacaagaaggagctatatataatttgcatgctattgcactgagacacattggcagc
ataaagcatgctatggacagttaccataaagcccagcagatttgtgaattgttgggatcc
aggcagaaccatgctgtagtacaggccaatttaggctttctgtgtattactgccaaattc
atgggactagcagagctctatctaacaaagtcagtgaaacttttttctgaacagcagaac
aacatctttgaaattcatttcattaaagttttgcttgaagttggactctactatgttggc
cagaatctgaaagataaagcaaagttcttttatgagtgggcattgcttatagctataatg
ggcaatcataatgaatcccaactccaggctgcccagctattatgttacttctacagagaa
gtgtgtccaaatgaagctcagtgtattatttacagtgagtacctgcttctgttggcacag
aagactggagacaaggtactggagggagaaaccttggaaaccattagccagctttatttt
ggtttaggaactgaaagagcttacagatcttcacttgaatacactaaaaggagtcttggt
atttttattgacttgaagaaaaaagaaaaagaagcatttggttggcttcaggcaggaaag
atttattacatactgaggcaaaatgaacttgttgacctttacatgcaggtagctcaagat
gcaggttccagtacaggaaatgtaaaatttatgttggaactttatgaagctgcaggagat
gtgttttttaatggatcctgggacagagaccgagcaattacattttacagagaccaagct
ctcccacttgccattgagctgaaggacttaaaggcacaaatgagactctccaacaagatt
gcagagttgttactgatcctgaaaaccttcagagaagctgtggagtttgttcagattgcg
ctttccattagcatcaagataggtgatcatttgaatgaaagagtttcttatcaccggctg
gcttctgtctactatctacttgatcagtttgagctcaccgaacactactatctcaaagca
ttgtccctttgctcctctcctctgcagtttgacgaggaagctctatattatgtgaaagtt
tatcaaatactgggagatataactttttataaattaaaggacccttatgatgcagctggt
tattatcaccttgctcttgcagcagcaatggatctaggaaataaaaggtctcagttaaag
ttatgtacacggcttgctactatctatcacaactttgtaatcaacagagaactctcactt
ttcttttatcaaaaggccaggggctttgcaacagaccttaatatacgcagaattaatctt
tcccctgatcatttattccaaaccatagctaataaacagttcagagcttag
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