Polypterus senegalus (gray bichir): 120527876
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Entry
120527876 CDS
T08668
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120527876 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120527876 (polr1a)
Enzymes [BR:
psex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120527876 (polr1a)
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120527876 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120527876
NCBI-ProteinID:
XP_039607720
LinkDB
All DBs
Position
4:complement(188599902..188705102)
Genome browser
AA seq
1714 aa
AA seq
DB search
MLFNKDNPWRRLEGVSFGIYSANEIRKLSVKAITNPQYLDNMGNPAPNGLYDLALGPADS
KEICTTCTQDFHHCPGHLGHIELPLPVYNPLFFDILYLLIRGSCLNCNMLTCPRAAIHVL
LNQLKLLEAGIINGVYELEETLGRCLASNPNMTGNEIQELLDDYSTDILKRLPVGIQLCN
VKNICDCKIVLIKQFWKRQMTCRKCPHCNTSKGVIRKEHNSKITLNYSFPAKKSSKKNRG
KKKDDNEDVDESSSAKRSYLTPSTAKQHIMELWKNEGFFLKCLFSGIEICSGSKEGFEPH
MFFLEVLAVPPSRYRPVNRLGDQMYTNGQTVNMQAVMKDSTVIQKLLFLIAQGKDEVKET
ENKEIEEQSLNEKDTTFLITIPGQTLSDKLYNSWIRLQSHVNIVFDSDMDKLMTDKYPGI
RQVLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNV
QELRQAVINGPNIHPGASMIINEDGSRTVLSNSSVEQREAIARQLLTPSIGQHKMAMKVV
NRHIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHF
PQNELGRAEAYMLASTDEQYLVPKDGTPLAGLIQDHMISGTSMTIRGCFFTRDQYMELVY
RGLIDKRGRVKTFPPAIMKPFPMWTGKQVVSTLLINVIPENHIALNLSGKAKIPLKAWVR
DQSRPVIDYDSEFMSETKVIIRGGELLCGVLDKAHYGSSPYGLIHCCYELYGGETSGKLL
TCLARLFTAYLQLYKGFTMGVEDILVKKRANSKREKIIADSTKCGNRALRAAFNLSDCTS
VIEARDKWEDAHLSKDQRDFNMVDLKFKEEVNQVSNNINKVCMPLGLHRRFPENNLQMMV
LSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDATPRAGGFVTGRFLTG
IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLSVRDSDGSVIQFL
YGEDGLDIPKTKFLQPSQFPFIKDNFEVIKKAKCSEEALSKMDISTAYKHCRAVKKWKAK
HQSTLPRNGAFLLYTQKHLPLMEEQSCPGELINGRNSVTMQLQKMWFLMDEKSRQKYLKK
SFRCPDPCLSVYQPDVYFGSVSEKFLNIVSDYISNCESHQSGSGICDIPLDSLKTLLLLK
WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASGNI
KTPMMSVPVINTKKALKKVKKLKQTLTRVSLSEVLHKVDVEEHLQVRSSVSRRRVYRITF
HFLPYECYQNDKCLTPNQILHYMESRFFHKLLDAVKKRTSKLASFKAVNVLKASKRDLDM
DAEDTGVNLANDANEGDVEEEAQIVDAVADEGDADATEAKRREKQEEEVDYESEEGEELN
ENDDDQEEGAAEVIQEDKVLSAENATTQDDWEYGTPLAKTDKKMNTAFLNEERINAVLGI
NSAIESYAYDTKESLWCEITLKLPLMKGYFDITSLVVSLSNTCVVQETKGLNRCLLNEVT
NNKGEREFMLNTEGINLPELFIYSDILDLNRLYSNDIHAMANTYGIEVAMRVIEKEIKDV
FAVYGIQVDPRHLSLVADYMCFEGTYKPLNRLGIQSNSSPLQQMTFETSYKFLKEAAMLG
ASDELKSPSACLVVGKVVKGGTGLFDLKQPLKYS
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttaacaaagataacccgtggagacggctcgaaggagtatcatttggtatatat
tcggctaatgagataaggaaacttagtgtaaaagccataactaatccgcagtatctggat
aatatgggaaacccagccccaaatggcctttatgatttggccttggggcctgctgactca
aaagaaatatgtactacttgtactcaggacttccaccactgtccaggccacttggggcat
attgaactgccactaccagtgtacaaccctttattttttgatattttgtacttgctaata
cgaggttcttgcctgaactgtaatatgctaacttgcccccgggcagctattcatgtgttg
ctgaaccagttgaaacttctggaagctggcattatcaatggagtttatgaacttgaagag
acactgggcaggtgtctggcatcaaatccaaatatgactggaaatgagattcaggaacta
ctggatgattactctacagacattctcaaaagattgccagtgggaatacagctctgcaat
gtgaaaaatatatgtgactgtaaaattgttttgattaaacaattttggaagagacaaatg
acatgcagaaagtgccctcactgcaatacctccaagggcgtaattcggaaagaacacaat
agcaaaataactctgaattattcttttcctgctaaaaaatcctcaaagaaaaatcggggc
aaaaaaaaggatgacaatgaagatgttgatgaatcaagttcagcaaaacgaagttatctt
actcctagcacagcaaagcagcatataatggagctatggaaaaatgaaggtttctttcta
aaatgcctcttttcagggatagaaatctgttccggttccaaagaggggtttgaaccacac
atgtttttcttggaggttcttgcagttcctccttccaggtaccgaccagtcaaccgactt
ggtgatcagatgtacactaatggacaaacagtaaacatgcaggctgttatgaaggactct
acagtaatccagaaactgctatttctaatagcacaaggcaaagatgaagtcaaagaaact
gaaaacaaagagatcgaagaacaatctttaaatgaaaaagatactacattcctcattaca
attcctggacagacattgtctgataagctttacaactcttggattcgacttcagagccat
gtcaatatagtttttgacagtgacatggataagttgatgactgataaataccctggtata
cgacaggtattagagaagaaagaaggtctttttcgaaagcatatgatgggaaagagagtt
gattatgctgctcgttctgtaatatgtccagatatgtacataggaacaaatgaaattggc
ataccaatggtatttgccacaaaactgacatatcctcagccagttacaccttggaatgtg
caggagctccgacaagctgtgattaatggtcctaacatccacccaggtgcttctatgata
attaatgaggatggatctcgcacagtgcttagtaattccagtgtggaacagagagaagcc
attgctagacagctgctcactccttccattgggcagcacaaaatggcaatgaaagttgtg
aaccggcacattaaaaatggagatgttttgttgctgaatcgacaaccaactttgcatagg
ccttctattcaagctcaccgtgcccgtatcctgccaggggaaaaagtgttgagattgcat
tatgccaactgcaaagcttacaatgcagattttgatggggatgaaatgaatgcacatttc
cctcaaaatgaactcggaagagcggaagcctatatgttggcaagtactgatgagcaatat
ttggtacccaaggacggtacacctttagcaggcttgattcaggatcacatgatttcaggg
accagcatgacaattcgaggatgcttcttcactagagatcagtacatggaactggtatac
agaggactaattgacaaaagggggagagtaaagacattcccacctgctattatgaaaccc
tttcccatgtggacaggtaaacaggttgtttccactctccttataaatgtaattcctgaa
aaccatattgcactcaatctctctggaaaagcaaaaattcccttgaaggcctgggtcagg
gaccagtctcgccctgttattgactatgactctgaattcatgagtgagacaaaggtgata
attcgaggaggagagctgttatgtggtgttttagataaggctcactatggaagctcacct
tatggacttattcactgctgttatgagctgtatggtggtgaaacaagtggcaagcttcta
acctgtctggctcgtcttttcactgcatacctacaactgtacaaaggttttacaatgggt
gtcgaagacattctggtgaaaaagagagctaattcaaaaagagagaagatcattgctgat
tctacaaaatgtggtaacagggcccttagagcagcatttaatctctctgactgtacttct
gtaattgaggcaagagataaatgggaagatgcccaccttagtaaagaccagcgagacttc
aacatggtggacttaaaattcaaagaagaagttaaccaagtcagcaacaacatcaataag
gtctgcatgcctcttgggctacatagaaggtttccagaaaacaacctccagatgatggtg
ctgtctggagctaaaggctctacagtaaatactatgcagatttcatgtcttcttgggcaa
attgagttagaaggccgcagaccaccattgatgccttctgggaaatctctgccttgcttc
cagccatatgatgcgactcctagagcagggggctttgtgacaggaaggtttctgactgga
attaaaccacctgaattctttttccattgtatggctggaagagagggccttgtagatacg
gcagttaagacaagtcgatctggttacttgcaaaggtgcattataaaacatttggaaggc
ctggtagtacagtatgatctgagtgtgcgagacagtgacggcagtgtgattcagttcctg
tatggtgaagatggactagatataccaaaaacaaagttccttcagcccagtcagtttcct
tttattaaggacaactttgaggtgataaaaaaagcaaaatgttctgaagaagccttaagc
aaaatggatatttcaaccgcatacaaacattgtagggcagttaaaaagtggaaagccaaa
catcaaagtactctgcctcggaatggggcttttctgttatatactcagaaacacctccct
ttgatggaagagcaaagttgcccaggagaactgattaatggcagaaattcagtaacaatg
cagctgcaaaagatgtggtttttgatggatgagaaaagtcgacaaaagtatctgaagaag
agctttagatgtccggatccttgtctttctgtatatcagcctgatgtttactttggttca
gtatctgaaaaattcctgaatattgtcagtgactacataagcaattgtgagtctcaccaa
agcggctctggcatttgtgatattcccttggacagcctgaagacccttcttcttcttaaa
tggcagcgatccttatgtgatccaggagaggcagtgggtcttttagcagcccaaagcatt
ggtgagccctccactcagatgacgctgaacacatttcactttgcaggtagaggcgagatg
aacgtcacccttggtattcccaggcttcgtgaaattctgatggtcgccagtgggaatatc
aaaacaccaatgatgagtgtcccagtaatcaataccaagaaggcactgaagaaagttaaa
aagcttaagcaaactttgaccagggtttccttatcagaggttctacataaagttgatgtc
gaagaacatttacaagtgaggagttcagtttccagacgcagagtttacagaataactttc
cactttctgccatatgagtgctaccaaaatgacaagtgcttgactccaaaccagattctt
cactatatggaatctaggttttttcataaattattggatgcagttaaaaagagaacatca
aaactggcttcttttaaagccgttaatgttcttaaagcttcaaaaagagacctggacatg
gatgcagaggacactggagtcaacctggccaatgatgccaatgaaggagacgttgaagag
gaagcccaaatagttgatgctgtagcagatgagggagatgctgatgctactgaagccaag
cgaagagaaaaacaagaggaagaggttgattatgagagtgaggaaggagaagaattaaat
gaaaatgatgacgaccaagaggaaggtgctgcagaagtgattcaggaagataaagtttta
tctgctgaaaatgctaccacccaggatgattgggagtatggtaccccacttgctaagact
gataaaaaaatgaatacggctttcttgaatgaagagaggattaatgcagttcttggcatt
aattcggcaattgagagttatgcatatgacaccaaagagagtctctggtgtgagattaca
ttgaagcttcctcttatgaaagggtactttgatatcacttcacttgtggtgtccctgtct
aatacttgtgtggtgcaagaaaccaaaggacttaaccgctgtttactgaatgaagtgacc
aataataaaggagagagagagtttatgttaaatactgaaggtatcaacctgcctgagctg
tttatctacagtgatattcttgacctaaaccgcctgtactcaaatgatatacatgccatg
gccaacacttatggaattgaagttgcaatgagagttattgaaaaagagattaaggatgta
tttgctgtttatggtattcaagtggatcctcgtcatttgtcattggttgcagattatatg
tgctttgaaggaacttataaacctctgaatcgattagggattcaatcaaactcctccccg
ctacaacagatgacctttgaaacaagttataaattccttaaagaagctgctatgttggga
gcgagtgatgagttgaagtctccatctgcgtgtcttgttgttgggaaagttgtgaaagga
ggcactggactatttgacttaaaacagcccctcaaatatagttga
DBGET
integrated database retrieval system
