Polypterus senegalus (gray bichir): 120528284
Help
Entry
120528284 CDS
T08668
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120528284 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120528284 (smg5)
03032 DNA replication proteins [BR:
psex03032
]
120528284 (smg5)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120528284 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
120528284 (smg5)
DNA replication proteins [BR:
psex03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120528284 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
120528284
NCBI-ProteinID:
XP_039608358
LinkDB
All DBs
Position
1:complement(83223947..83421639)
Genome browser
AA seq
1129 aa
AA seq
DB search
MSGPGQDTEPEAKILHTKRLYRSVVESVHKLDVIIANKSSYREVFKPENISLRNKLRELC
IKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSHSTLECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQNCIDWTHVTDPLIERKKPVSATTKEMEWAQMACHRCLVYLGDLAR
YQNELAGVDAELLAERFYHQALSVSPNIGMPFNQLGTLAGSKYYNVEATYYYMRCIQSEV
PFDGAYGNLKRLFEKSAKMYHQVKKQELKKLTPAKQRSQDIKRLLVSFMYLQGLFQPKNS
LLESDLTFLCQSVLEDFNLVLFYLPSPSHSSLTTEDDDDHENRYSFVPDLLTFRMMVTCL
MVVHNLKRTGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENEVSALHTDNADDREL
KDPLILTLEERNMQNGTADEEDGDEDENEGKIGLESNHKGGISDELKKCTKKKYSRLSRL
RRRRYTRKEDESDLSEGFDSEGEIGADDENRDLVPGKCSKDTVSPELNLISESVSSRQSG
NASTPWDSGSDKSDGADEEEEEEEEEAETAFDVETDSDMNSQESRSDLEDIEEGPKEQTQ
VDFAEGGLNTVSNANNEQESHMFETSKVNDLTDGRMDGNTSVNGPISALALGSSNNDSSI
ASNLQAMSSQLFQTKRCFRLAPTFSNVLLRPCNPHSTPVEPVPPSSSKPLNSASSPETAT
TNGALNCPNENDGGSDSEGSVTSNHSCLNEKAIPERVEILMGQGLLPAVKIFLDWLKANT
DIIVMCAQSSQSLWNRLSVLLNLLPDGSKILEADLHLCEEVTDLLSECECPELKQSLLLP
EDVALRHLPALRVAHKKLNFEHDQPTLSLLEESIVRLCCIRSFGHFLTRLQGSVLHFNAE
AGIFTSVCQSEEDNLVQQARAQFRMAEEEARRNRLMRDMAQLRLKLEVSQLEGSLQQPKT
QTSMSPYLVPDTTTLCQHLGLIRQLASSGRFIIIIPRTVIDGLDFLKKENAGARDGIRFL
ESEFRKGNRYIRCQKESGKSFERHKLKRDDIDAWHLHKIIDSCRQLTVSQGNGEEDTAGM
VTILTGFQIDEDNFSSLSPHMQSAVQAVVAAGIEIKNVLDFYKQWKEMG
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggcccgggcaggacaccgagcccgaggcgaaaatactgcatacgaagcgactg
taccggtcagtggtggagtccgttcacaagctggatgttataattgccaacaagtcatcc
tacagggaagtctttaaaccagaaaacatcagcctccgcaacaagctaagggaactgtgt
attaaacttatgttccttcatcctgtggattatgggaggaaggccgaagagctactttgg
aggaaagtttattatgaagttatacaactcatcaaaacgaataaaaagcacattcatagc
catagtactctggaatgtgcttacaggacccacctgattgctggtgttgggttttaccag
cacttgcttctttacatacagtctcattatcaattggaactgcaaaactgtattgactgg
acccatgttaccgatcctttaattgaacgaaagaagccagtttctgctactacaaaggaa
atggaatgggcacagatggcttgccaccgttgtcttgtctatttgggggatctcgctcgt
taccagaatgagctagcaggtgtagatgcagaactacttgcagagagattttatcatcaa
gctttatcagtgtcgccaaacataggaatgccttttaaccagcttggaacgttagctgga
agcaagtattataatgtggaggctacttattactacatgcgatgcatccaatctgaggtt
ccctttgatggagcctatggtaatttgaagcgactttttgaaaagtctgccaagatgtat
catcaggtgaaaaaacaggaactgaagaagctgaccccagcaaaacagaggtctcaagac
attaaaagattgttggtgagctttatgtatctccagggcctcttccaacctaagaacagc
ttactggagtcagacttaacattcctttgccagtctgttttggaagattttaatctggtc
ctcttttacttgccctccccttcacattcttcattgactactgaagatgatgatgaccat
gaaaatcgctactctttcgtccctgacttactcacgtttagaatgatggtcacatgtctc
atggttgttcataaccttaaaagaacaggctctaagcaatacagtgcagctattgctttt
acattggcactattctctcacttggtgaatcatgttaacattcgccttcaggctgaatta
gaagaaggggaaaatgaagtttctgcattgcatactgataatgcagatgaccgggaactt
aaggatcctttaatattaacattagaggagagaaatatgcagaatggaacagctgatgag
gaagatggcgatgaagatgagaatgaagggaaaatcggcttagaaagcaatcataaaggt
ggaatttcagatgagttaaagaagtgcaccaagaagaaatattcccgactgtccaggttg
cgtcgacggcggtacactcgtaaagaggatgagagtgacctaagtgaaggctttgacagt
gagggagagattggagcagatgatgaaaacagagatcttgttcctggaaaatgcagtaaa
gatactgtttctccagaattaaatttgatatctgagtctgtaagcagcagacaatccggt
aatgcctcaacaccctgggacagtggatcagacaaaagtgatggggcagatgaagaggaa
gaggaggaagaagaggaggcagaaacagcatttgatgttgaaactgattctgatatgaat
agtcaagaatctcgttctgatctagaagacattgaagaaggtccaaaggaacagactcaa
gtggactttgcagaaggcggtcttaatacagtatcaaatgctaacaatgaacaggaatcc
catatgtttgaaacctctaaagtaaatgacctcacagatggaaggatggatggcaacact
tcagtgaatggacccatttccgccctagcccttggaagcagcaacaatgattccagtatt
gccagtaatctccaggcaatgtcttctcagctattccaaacaaaaagatgctttaggctt
gctccaactttcagtaatgtcctgctaagaccttgtaatccacattctactccagtagag
ccagttccaccctccagtagtaagcctctgaatagtgctagcagtccagaaacagctacc
actaatggagctctcaactgtcccaatgaaaatgatggtggctccgattcagaaggaagt
gtgacaagcaaccattcctgtttaaatgagaaggcaatcccagaacgagtggaaattttg
atgggtcaaggtctgcttcctgctgtcaaaatcttcctggactggttgaaggctaacacg
gatattatagttatgtgtgcccagagctcacagagcctgtggaatagactgtctgtgctt
ttgaatctcctgcctgatggaagtaagattcttgaagctgacttgcacttatgtgaagag
gtaactgaccttttgagtgaatgtgagtgtcctgagcttaaacagagcctgcttcttccg
gaagatgtggcattgcggcatttacctgctttgcgagtcgctcacaaaaagctgaatttt
gaacatgaccaacctacacttagtttactggaggagtcaattgtgaggctgtgctgcatt
cgcagttttggtcacttcctgactcgtcttcaaggtagtgtactacattttaatgcagag
gctggtatctttaccagtgtctgccaatcagaagaggataacctagtacagcaggccaga
gctcagtttcgtatggcggaggaagaagcacgtaggaacaggctgatgagggatatggca
cagctacgtctgaaattggaggtgtcacagctagaaggtagtctacagcaaccaaagacc
cagacctctatgtcaccctaccttgtgcctgacactaccacactgtgccagcacttgggg
ctcatcagacaacttgcaagcagtggccgcttcatcattattatccctcgcacagtcatt
gatgggctagatttcctcaagaaagagaatgctggtgccagagatggaattcgcttccta
gaatcagaatttcgcaaaggaaacaggtatattcggtgtcagaaggagtctgggaaaagc
tttgagaggcataaactgaagagagatgacatagatgcctggcacctgcacaaaattatt
gatagttgtcgtcagctgacagtttcacagggtaatggagaagaggatactgcgggaatg
gtgacaatcttgacaggatttcaaatagacgaagataacttttcatctctgtctccacac
atgcagtctgctgttcaggctgttgttgctgctgggatagaaataaaaaatgtgttggat
ttctacaagcaatggaaggaaatgggttga
DBGET
integrated database retrieval system
