Polypterus senegalus (gray bichir): 120529403
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Entry
120529403 CDS
T08668
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03018
RNA degradation
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120529403 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
120529403 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120529403 (lsm5)
03041 Spliceosome [BR:
psex03041
]
120529403 (lsm5)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120529403 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
120529403 (lsm5)
Spliceosome [BR:
psex03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120529403 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
120529403
NCBI-ProteinID:
XP_039609103
LinkDB
All DBs
Position
5:101359438..101380636
Genome browser
AA seq
91 aa
AA seq
DB search
MATVQSTNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgtgcagagtacaaatccttcgcagctgctcccgctggagttggttgataaa
tgtattggatctcgcattcacattgttatgaagaacgacaaagagattgttggaactcta
cttgggtttgatgattttgtcaatatggtccttgaggatgtcacagagtttgagattaca
ccagaaggaagaagaataactaagcttgaccagattttattgaatggaaacaacatcact
atgttaattccgggaggtgaaggtcctgaagtatag
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integrated database retrieval system
