Polypterus senegalus (gray bichir): 120529534
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Entry
120529534 CDS
T08668
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04140
Autophagy - animal
psex04148
Efferocytosis
psex05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120529534 (vps41)
04148 Efferocytosis
120529534 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120529534 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120529534 (vps41)
Membrane trafficking [BR:
psex04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
120529534 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8_fungal
WD40_WDHD1_1st
Vps39_1
Beta-prop_HPS5
WD40_Prp19
Beta-prop_EML_2
zf_RING_Vps8
TPR_PEP5_VPS11
TPR_7
zf-RING_5
Beta-prop_RIG_2nd
TPR_GEMI5
Pep3_Vps18
Frtz
TPR_12
zf-Vps39_C
Gin
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
120529534
NCBI-ProteinID:
XP_039609341
LinkDB
All DBs
Position
5:141121619..141266973
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AA seq
855 aa
AA seq
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MAEVEEQGHRTSDESTDDSEEDESEEEPKLKYERLANGVSEILQKDAASCMTVHDKFLAL
GTHFGKVFLLDVQGNVTQKFDISTVKINQISLDDSGEHVGICSEDGKIQVFGLYTREGFH
DNFDCPIKVVALHPQFGRSSSKQFVTGRNKLQLYERNWLNRWKTITLHEGEGIITNVKWR
GSLVAWANSLSVKIYDINAKQRITNVLRDNNSLRPDMYPCSLCWKDNTTLIIGWGTSVKI
CIVKERDPTEMRDLPSRYVEIVSAFDTEFFISGLAPLGDQIVILYYVKEASEHQEEKELR
SRPRLDIVQPLPESYEEISSDALTVRNFQENECLDYRLEHSEGESLFYIISPKDIVVAKE
RDQDDHIDWLLDKKKYEEALMAAEISHKNIKRHEVQRIGISYINHLVEKGEYEAAARKCQ
KVLGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYETILHEFLKSDFEGFATL
IREWPGDLYNNMTIVQAVSDRLKKDQNNRTLLTTLAELYTYDQRYDKALEIYLRLRHKDV
YQLIHKHNLFSSIEDKIVLLMEFDKEKAVDMLLDNEDKISIDKVVEELAHHPAMQHVYLH
KLFKRDPHKGHKYHEMLISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVFL
LSRMGNSRRALQMIMEELYDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGT
HVDPILLIHRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLSLLKKMHRTQ
TRGVRVDEENICESCHEPILPLDTAKSYNIVVFHCRHMFHKECLSSSSTIPPVQFCNICS
AKRRGPGSGIVEIKK
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtagaagagcagggacatagaacaagtgatgaatccacagatgattcagag
gaagatgagagtgaggaggagcccaagctgaaatatgagcgtttggccaatggagtctcg
gagatactccagaaagatgcagccagctgtatgactgttcatgataagtttctggcactg
ggaactcattttggcaaggtgtttcttttggatgttcaaggaaatgtcactcagaaattt
gacattagtactgtgaaaataaatcaaatcagtctggatgatagtggcgagcatgtaggc
atctgctcagaagatggcaagattcaagtgtttggtttatacaccagggaaggctttcat
gataactttgactgccctattaaagtggtggctctacaccctcagtttggaagatctagc
agcaagcagtttgtcacaggacgaaataagcttcagttatatgagaggaactggctaaac
agatggaaaactattacactccatgagggagaaggaataattactaatgtcaaatggcga
ggcagtttagtagcctgggcaaacagtttgagtgtaaaaatatatgacatcaatgctaaa
caaagaataaccaatgtcttgagagataataacagccttcgacctgatatgtatccttgt
agtctgtgctggaaggataacacaacacttatcataggctggggaacttctgtaaagata
tgtattgtgaaggaaagggatccaacagaaatgcgagatcttcctagccgctatgtggaa
attgtgtctgcctttgatacagagttttttatcagtggacttgcacctcttggtgatcag
attgtaatcttgtattacgtgaaagaggcttcagagcatcaggaggagaaagagttgcga
tctagaccccgactagacattgtgcagcctcttccagaatcctatgaggagatatcttca
gatgcactgactgttagaaacttccaagaaaatgaatgccttgactatcggcttgaacat
tcagaaggggaatctctgttttatataatcagccctaaagatatagttgtagccaaggaa
cgtgaccaagatgatcatattgactggctgcttgacaaaaagaaatatgaagaagcatta
atggcagcagagattagtcataaaaacataaaacgtcatgaagtacagagaattggtatt
agctacattaatcatttggtggaaaaaggagaatatgaagcagcagcaaggaaatgccaa
aaagtccttgggaaaaatatggaactctgggaaaatgaagtttatagattcaaaacaata
ggacaacttaaagctattagccagtatttgccaagaggagatcttcgactaagacctgct
atttatgaaacaattcttcatgagtttctcaaaagtgattttgagggttttgcaacatta
attcgggaatggccaggtgatctttacaacaatatgacaattgttcaagctgtaagtgat
cgtctgaaaaaagaccaaaacaataggacgcttctgactaccctggctgaactatataca
tatgaccaacgttatgataaagcccttgaaatttatctaaggctgcgacataaggatgtt
taccagttgattcataagcataaccttttttcatccattgaagacaaaatagttttgttg
atggagtttgataaagagaaagctgttgacatgttgctggacaatgaagacaaaatatca
attgataaagttgtggaggaacttgcacatcatcctgcaatgcaacacgtgtatcttcat
aagctatttaaacgtgatccacacaagggtcacaaataccatgagatgttgattagccta
tatgcagaatatgatcgaccaaatctcctacccttcttgagagacagcacacattgtcct
ctagaaaaggctttggaaatttgccaacagaggaactttgtggaagaaactgtatttttg
ctaagcagaatgggcaatagccggagagctttgcaaatgataatggaggagctctatgat
gtagacaaagcgattgagtttgcaaaggaacaggatgatgctgaactttgggaagatcta
atatcttattcaattgacaagccaccttttatcacaggcctgttaaacaacattgggaca
catgtggatccaattcttttaatccatagaatcaaggaaggcatggaaattcctaatctt
agagattcactagtaaagatccttcatgactataatctgcaaatcctgctgcgagaaggc
tgtaagaagatcctagtcgctgactctttatctttgttgaaaaagatgcatagaactcag
acaagaggcgttagagttgatgaagagaatatttgtgaatcatgccatgaacctatttta
ccattagatacagccaaatcttacaacatagtggtcttccactgtagacatatgtttcat
aaggaatgtttgtcttcctcaagcactattcccccagttcagttttgtaacatctgcagt
gcaaaacgcagaggcccaggaagtggcattgtggagataaagaagtga
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