Polypterus senegalus (gray bichir): 120529642
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Entry
120529642 CDS
T08668
Symbol
shha
Name
(RefSeq) sonic hedgehog protein A isoform X1
KO
K11988
sonic hedgehog
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
120529642 (shha)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psex01002
]
120529642 (shha)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120529642 (shha)
Peptidases and inhibitors [BR:
psex01002
]
Cysteine peptidases
Family C46: hedgehog family
120529642 (shha)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Morphogens
120529642 (shha)
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Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
DUF6212
Motif
Other DBs
NCBI-GeneID:
120529642
NCBI-ProteinID:
XP_039609556
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Position
5:170745330..170755126
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AA seq
420 aa
AA seq
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MDGMLLLTRIVLAGFICASLVSFGMACGPGRGYGRRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKTTRNSERFKELTPNYNPDIIFKDEENTAADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSSSVILSNGEPKLVKNLIPGDKLLAVNDQGGLVFTD
FIMFADKDSNTRRIYYVIETEEIGKKITLTAAHLLFVSDNTTGGSLMKTTFASKVKPGQQ
VYVAEGASDPLQLVTVKRIYLEEHKDAFAPITTHGTIVVDHILASCYAVIEEHRLAHWAF
GPVRLVYGLTSLLFPKDNSITNSTGQEDGIHWYSNALYHIGTWLLVNDSIHPLGMAMNSS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggacggaatgttgcttctgacgagaatcgtgttagccggcttcatatgtgcttccttg
gtctccttcgggatggcttgtggaccaggaaggggctacgggagaagaagacacccgaaa
aaactgactcctttagcttacaagcagttcattcccaatgtggcagagaagaccctaggg
gccagtggcagatatgaagggaagactactaggaattcagagagatttaaggaactgact
cccaattacaatcccgacattatttttaaggatgaagaaaacacagctgctgacagacta
atgacacagagatgtaaggacaaattgaactctttggcaatctcagtaatgaatcagtgg
cctggcgtgaagctgagagtaactgaaggctgggatgaagatggtcaccactctgaagaa
tctctgcattatgaagggagagccgttgatatcactacctcggacagagaccgcagcaaa
tatggcatgcttgccaggctggcagtggaggctggctttgactgggtttattatgagtca
aaagcccacatacattgttcagtaaaagcagaaaactctgtggctgctaaatcaggtggt
tgttttcctggttcatcctctgtgatactgagtaacggagaaccaaaactagtgaaaaat
ctgatccctggagacaaactattggcagtgaatgaccaaggaggcctcgtttttacagat
ttcattatgtttgcagacaaagacagcaataccaggagaatttattatgtcattgaaaca
gaggagattggcaaaaagatcactctcacagctgcccatcttctgtttgtgtctgataac
actactggcggctcattaatgaagacaacatttgcaagtaaagtaaaacctgggcaacag
gtctatgtagctgaaggtgcaagtgatccgctccaactggttacagttaaaaggatttac
ttggaagagcataaagatgcctttgcaccaatcactacccatggtaccatcgtagttgat
catatactagcatcctgctatgctgtgatagaagaacacagactggcacattgggcattt
ggacctgtccgattggtatatggactaacatctttattgttcccaaaagacaattcaata
accaacagtactggccaagaagatggcattcattggtattccaatgctctgtatcacata
ggaacatggctcttggtcaatgactccattcatccacttggaatggcaatgaactctagt
tga
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