Polypterus senegalus (gray bichir): 120530840
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Entry
120530840 CDS
T08668
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psex04515
]
120530840 (clstn1)
Cell adhesion molecules [BR:
psex04515
]
Cadherins
Cadherin related
120530840 (clstn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
Toxin_R_bind_N
CDC45
Laminin_G_2
EphA2_TM
Glyco_hydro_16
PRIMA1
V_ATPase_I
Cadherin_C_2
Zip
Motif
Other DBs
NCBI-GeneID:
120530840
NCBI-ProteinID:
XP_039611444
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All DBs
Position
6:19723403..19816689
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AA seq
983 aa
AA seq
DB search
MTRGQFRGERQTKRMHLLKYIEWVCLWSLFCGIQAAKVNKHKPWIETTYHGIITENDNKV
LLDPPLIALDKDAPLQHAESFEVTFTKEGEICGFRIHGQNVPFEAMVLDKTTGEGVIRSK
EKLDCELQKEHTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDVNEYSPVFKEKSYKATV
IEGKKYDNILKVEAVDADCSFQFSQICSYEIVTPDVPFTIDKDGYIRNTEKLNYSKERQY
KLTVTAYDCGKKRAVDDVLVKINIKPTCKPGWQGWNKRMEYEPGTGSLALFPGMHLETCE
EPITSIEANIELETNHIGKGCDRDTYSEKSLHRLCGVSSGTVELLPAPSSTVNWTAGLPT
DNGHDSDQVFEFNGTQAIKIPEGVVTTNMKEPFTISVWMRHGPGAREKEHILCNSDKTDM
NRHHYAVYVHNCRFVFLFRQDPSVSEIYKPAEFHWKLDQACDKEWHHYVLSIDFPTVALY
VDGVSYDPFQVTEDYPLHPSKIETQLVVGACWQDNAEHENENDTNPEMFAGGNLRMAQFF
HGNLAGLMIRSGKLENKKVIDCLYTCKEGLDIQLPEELGSSIKVHFNPNQSLLVMEGDDI
ESFDKAMQHVSYLNSRQFPTPGIRRLKVTTAVKCFNEETCISVPNVEGYIMVLQPEEPKI
SLSGIDHFARAASEFESKEGVKLFPELRIVSTISREVEPEGEGEDDPTVQESIVSEEILH
NLDMCEVTVLGDELNTEQESLDIDLSLIHQKGMEMSTSNLGMIITGVDTMANYEQVLHQV
RYRHWHAESLFDRKFKMVCSELNGRYISNEFKVEVNVIHTANPVDHANNVMAQPQFVNRM
HHADLPGHNLAKPHPALVVPSAATIVIVVCVSFLVFMIILGVFRIRAAHQRSMRDHENGK
ENEMDWDDSALTITVNPMETYEDQHSSEDEEEEAEESEDGEEDDITSAESESSEEEDGEQ
EEGQNVIRQQQQQLEWDDSTLNY
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgacgaggggccaattcagaggagaacgccaaacaaaaaggatgcatttactgaaatat
atagagtgggtttgtctgtggagtctattctgcgggattcaagcagctaaagttaacaaa
cacaagccatggattgaaacaacatatcatggaataattacagaaaatgataacaaggtg
cttcttgatccgcctttaattgcattggataaggatgctcctcttcagcatgcggagagt
tttgaggtgacttttaccaaagaaggtgaaatctgtggatttaggattcatgggcaaaat
gttccatttgaagccatggtgctggacaaaacaaccggcgagggagtcattcgctccaag
gaaaagcttgactgtgagctccaaaaggagcacacgttcacaatccaggcatatgattgt
ggagagggtccagacggtgccaacatgaagaaatcccacaaagcaactgtccatattcaa
gtgaatgatgtgaatgaatactctcctgtattcaaagaaaagtcatacaaagcaactgtg
atagaggggaaaaaatatgacaacatccttaaagtggaagctgttgatgcagactgctcc
ttccagttcagccagatttgcagctatgaaattgtaactccagatgtgcctttcaccatt
gataaagatggatatattagaaacacagagaaacttaactacagcaaagaacggcagtat
aagctaacagttacagcatatgattgtggaaagaagcgtgctgtggatgatgttcttgtt
aaaataaatataaaacctacatgtaaacctggctggcaagggtggaataaaagaatggaa
tatgagcctggaacaggaagtttggctttgttccctggcatgcatttagaaacctgcgaa
gagccaattacttcaattgaggcaaatattgaactagaaaccaatcatatcggcaagggc
tgtgacagagatacatactctgaaaagtctcttcatagattatgtggtgtatcttcaggg
acagtggaattacttccagctcccagcagcacagttaactggactgcaggccttcctact
gacaacggtcatgatagtgaccaggtgtttgaattcaatggtacacaagctatcaagatt
cctgaaggtgttgttacaaccaacatgaaggaacctttcacaatctctgtgtggatgaga
catggtcctggtgccagagagaaagagcacatcctgtgtaactctgataagacagatatg
aatcgccatcattatgcagtctatgtacataactgcagatttgtatttctgttccgtcaa
gatccttcagtcagtgagatctacaaacctgctgaattccattggaaacttgatcaggca
tgtgacaaagagtggcatcactatgtccttagcattgattttcccactgtggcactctat
gtagatggagtgtcatatgatccattccaggtgactgaagattatccactgcatccttct
aagattgaaacacagctagtggttggtgcatgctggcaagacaatgcagaacatgagaat
gaaaatgacaccaatcctgagatgttcgcaggtggaaacctgcgtatggctcagttcttt
catggtaacttagcaggtttaatgattcgatcgggtaaactggagaacaagaaagtaatt
gattgcctgtatacctgcaaagaggggctggatattcagcttcctgaagagcttggcagc
agcattaaggttcactttaatccaaaccagtccctgttggtaatggagggagatgacatt
gagagctttgataaagcaatgcaacatgtgtcttatttgaattcacgtcagtttccaacc
cctggaatcagaaggcttaaagtcacaacagctgtcaagtgttttaatgaggagacctgc
atctctgtcccaaatgtagaaggctacatcatggttttgcagccagaggaacccaagatt
agcctaagtggcattgatcactttgcaagggcagcttcagaatttgagagtaaagagggt
gtaaagctgtttccagagctcaggattgttagcacaatctctcgtgaggtggagccagaa
ggggaaggagaagatgatccaacagtccaagagtccattgtctctgaagagattttgcat
aatcttgacatgtgtgaggtgacagttttgggggatgagctgaatactgaacaggagagc
ctggacattgacctttctttgattcatcaaaaaggaatggagatgagcacatcaaacctt
ggaatgattattactggggtggatactatggcaaattatgagcaggttctccaccaggtc
cgctatcgacactggcatgcagaatccctctttgataggaagttcaagatggtctgttct
gaacttaatggccgctacatcagtaatgagttcaaggttgaggtaaatgttattcacaca
gctaatccagtcgaccatgctaacaatgtgatggcacagccacagtttgtcaatcgaatg
caccatgcggatttgcctgggcataatttagcaaaacctcatccagcgttggttgttcca
agtgctgccacgattgtaattgtggtttgtgtcagcttcctggtgtttatgattattttg
ggagttttccggatccgtgctgcacatcagaggagtatgagggaccacgagaatggcaaa
gaaaatgaaatggactgggatgactctgctttaaccatcacagtcaaccccatggagacc
tacgaagaccaacacagcagcgaagatgaggaagaagaagcagaggaaagtgaagacgga
gaagaagatgacattaccagtgccgagtctgaaagtagtgaggaggaggatggtgagcag
gaggaaggacagaacgttatcaggcagcagcagcagcagttggaatgggacgactcgact
ctgaattactga
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