Polypterus senegalus (gray bichir): 120530888
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Entry
120530888 CDS
T08668
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04120
Ubiquitin mediated proteolysis
psex04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120530888 (ube4b)
04120 Ubiquitin mediated proteolysis
120530888 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120530888 (ube4b)
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120530888 (ube4b)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
U-box type E3
120530888 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Amino_oxidase
Motif
Other DBs
NCBI-GeneID:
120530888
NCBI-ProteinID:
XP_039611578
LinkDB
All DBs
Position
6:complement(25893004..25989165)
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AA seq
1367 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGQTSQPSTPLSTPLTSPQRENPPGPPLAPAVTPLAPTPGPS
HNFGLNVQSMTPVTSPIGASGVAYRSQSSEGVSSLSSSPSNSLETQSQTLSRSQSMDIDS
MTCEKSMSQVDVDSGIENMEVEDSDRREKSLSDKDSSPSEVSEEQALHLICKIFRVSWKE
RDRDVIFLPSLAAEFRHNPKEVYCDFKDLIGQILMEVLMMSTQSRDNNPFASLTATSQPI
AALAKSPDRHLVLNPLSSQGSSPVFSNPGLIGASSLSSLYGTSPVLPSVSSSVVTSLPLP
PPASPPFQLSHSSASRPTLLSSPTSSRSFPWGSSSPMPISPRYRPYSVSYPWSTTSSPRS
SSATSSAAVASSPGLHISQNSQGMVSSPQTFPAVSHSPQQAGGVPPLLIPESPSTAVQQL
PVSNRIPTSIYDSSLSFLLFALSDVSEDSSDEETEEEDFSRIQFGSSLSVTGGIAASESS
SDRFTIEPCKETEMLNYLIERFESVGIEERKAPKMCSQPFVSQLMSNIRSQCISHAALVL
QGALTQPRSQLQQSLLVPYMLCRNLPYGFIQELIRMTHQDEDSFRQIFVPILQGLELAVT
ECSFDSDNFKYPLMALAELCEIKFGKTHPVCSLITSLPLWCPDSLSSASGRELQRLSYLG
AFFSLSVFAEDDPKVADKYFSGPAITLENTRVVSQSLQHYLESARGDLFKILHNILLNGD
TREAALNYMAAIVNRNMKKAQMQTDDRLVSTDGFMLNFLWVLQQLSMKIKLETVDPFYVF
HPRCRLSVPPDETRLRATMEELKSWLAELHEDPLKFTEPKFPTECFFLTLHTHHLSILPG
CRRYIRRLRAIRDLNRTVEDLKNSENQWKDSPLATRHREMLKRCKTQLKKLVRCKACADA
GLLDENLLRRCLQFYGMVIQLILRIIDSAYPNITLPLHPDIPKVFAALPEFYIEDVAEFL
LFVVQYSSQVLYEPCTQDIVTFLIVFICSQNYIRNPYLIAKLVEVLFVTNPAVQARTQRF
SEMIENHPLSVKHLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGT
FMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEIQEEMKNKEHWDLLPREQQQSR
QSQLTQDERVSRSYLALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPK
CRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFARAIADDQRSYSRELFEEVISKMKK
AGIKSTIAIEKFKLLSEKVEEIVAKNSQSEIDYSDAPDEFKDPLMDTLMTDPVRLPSGNI
MDRSVILRHLLNSSTDPFNRQPLTENMLEPIPELKERIHAWMREKRQ
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctcagtgccgacgagatacgcagacggcgccttgctcggcttgctggtggc
cagacatctcaacccagcacacctcttagcactcctttgacgtcaccacaacgggaaaat
ccacctgggccgccattggcacctgcagtgactccactggcccccacaccaggtccttct
cataattttggcctaaatgttcagagcatgacacctgttacctctcctattggagcctca
ggtgttgcctatagaagccagagtagtgagggggtaagttccctcagcagttctccttct
aacagtttggagacacagtcccagaccctgtccagatcacagagcatggatattgacagt
atgacttgtgaaaaaagtatgtctcaggtggatgttgactcaggaattgaaaacatggaa
gttgaagatagtgatcgaagggaaaagagtctttctgacaaggattcttcaccgtcagag
gtttcagaggaacaagctttacaccttatatgcaagatatttagagtttcctggaaagag
agggatcgagatgttattttcctgccatcacttgctgctgagtttagacataatccaaaa
gaagtttactgtgactttaaagatcttatagggcagatcctaatggaggtcctcatgatg
tccacacagtcaagagacaataaccctttcgccagtctgactgcaacgtctcagccaatt
gcagcacttgccaaatctccagatagacacttggttcttaatcctttatcaagccaaggg
tcaagtccagtgttttcaaatccaggcttaattggggctagttctttatcaagtctgtat
gggactagtccagttctgccatctgttagttcttcagtggtgacatctcttccattacca
ccaccggcatcaccaccatttcagctttcccactcatctgcctctagacctactttgcta
tccagtccaacttcttctcgttcctttccttggggttcttcatcaccaatgccaatttca
ccaagatatcgaccctactcagtcagctatccatggagtaccacttccagcccaagatca
tcttctgcaactagttctgctgctgtggcctcctcacctggactgcacatctcacagaat
tcccaaggcatggtatcaagtccacagacctttccagcagtctctcacagtccacagcaa
gctggtggtgtgccccccttgcttattccagagtcacctagtacagctgttcaacagtta
cctgtctcaaacaggatacctactagtatttacgacagctccctctcctttctcctcttt
gccctgtctgatgtttctgaagacagcagtgatgaggagacagaggaagaagacttttct
aggatccagtttgggtccagcctcagtgtgacaggagggattgcagcatcagagtccagc
agtgaccgtttcaccattgaaccttgtaaagagactgagatgttaaactacctcatagag
cgctttgagagtgttggaatagaggagaggaaagcgccaaagatgtgcagccagcccttt
gtcagccaactaatgagtaacattcgttcccaatgtatttctcatgctgctttggtgtta
cagggtgcacttacacagccaagatctcaactacagcagtctctgctggtcccatacatg
ctatgccggaatctgccatatggatttattcaagaactgatacgaatgactcaccaagat
gaggattctttcagacagatatttgtaccaatacttcagggtttggaactggcagtcaca
gaatgttcttttgacagtgataatttcaaatatcctttaatggcattagcagaactatgt
gaaatcaaatttgggaagacacatccagtttgcagtttgattacatcattgcctctctgg
tgtcctgactctttaagctctgctagtggacgagagttgcaaagactatcatatcttgga
gcctttttcagcttgtctgtatttgctgaagatgatcctaaagtcgcagacaaatacttc
tctggccctgccattacgttggagaacaccagagtggttagccagtctctgcagcattat
ctggaatctgcaaggggtgatctttttaaaatcttgcataatattttgctcaatggtgac
accagagaggcagcgctgaattacatggctgctatagtgaatcgaaatatgaaaaaagcc
caaatgcagacagatgatagacttgtgtcaacagatgggtttatgttaaatttcttgtgg
gtccttcagcagttgagcatgaagattaagctggaaactgtcgaccccttttacgttttc
catcccagatgcagattaagtgtgcctcctgatgaaacacgtctcagagccaccatggag
gaactaaaaagttggttggctgagctccatgaagatccgttaaagttcaccgagccaaaa
ttccccacagagtgcttttttctaacattgcacactcatcatttgtcaatactccctggc
tgtcgtcgctacattagacggttaagggccattagggacttgaacaggactgtagaagac
ctgaaaaacagtgagaaccaatggaaagattctccccttgcgacaagacaccgagaaatg
ttaaaaaggtgtaaaactcaacttaagaaattagtacggtgcaaggcctgtgcagatgct
ggtttgctggatgagaaccttttaagaagatgtttacagttttatggcatggttattcag
ctgatactacgtattattgattctgcctatccaaatataacactacctttacaccctgat
attcctaaagtgtttgctgctttgcctgagttttacattgaagatgttgctgaatttctt
ctgtttgttgtacagtattcctcccaggttctatatgagccatgcactcaggacattgta
acattccttattgtatttatctgcagtcaaaattacattagaaacccctatcttattgcc
aaacttgttgaagttctttttgtgacaaatcctgctgtccaggctcgaacacaacgtttt
tcggaaatgatagaaaatcatccattgtctgtcaaacatcttgttcctgcactcatgaag
ttttatacagatgtggaacacacaggagcgactagtgagttctatgacaaatttaccatc
cgatatcatatcagtaccatttttaaaagtctgtggcaaaacatcgctcaccatggtact
ttcatggaggagttcaactctggaaagcagtttgtccgctatatcaatatgttaataaat
gataccaccttcttactggatgaaagcttggagtctcttaaaagaatccacgagatccaa
gaggagatgaagaataaagaacactgggacttattaccaagggagcagcagcaaagtcga
caatctcagctgactcaagatgagcgtgtatcacgttcctaccttgctctagcaacagaa
acagtagacatgtttcacatccttaccaagcaagttcagaaaccttttcttaggcctgag
cttgggccacgtttagcggcgatgttgaacttcaatttgcagcaactatgtggtcctaaa
tgtcgagacctgaaagtggaaaacccagaaaagtatggttttgagccaaaaaagctgctg
gatcagctcactgatatttacctacagctagactgtgcacggtttgccagggcaattgca
gatgatcagaggtcatatagcagagagctctttgaggaagtcatctctaaaatgaagaag
gctgggataaagtcaacaatagcaattgaaaaattcaaacttctgtctgaaaaggttgaa
gagattgtagccaagaattctcagtcagagattgattacagtgatgcccctgatgagttt
aaagatcccttaatggacaccttgatgactgacccagtgaggctaccctctggaaatatc
atggatcgctcagtcatattaagacatttgctgaactcctccacagatccatttaaccgc
cagccccttactgagaacatgctggagccaattcctgagcttaaagaaagaatacatgca
tggatgagagaaaagcgacagtga
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