Polypterus senegalus (gray bichir): 120530991
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Entry
120530991 CDS
T08668
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120530991 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120530991 (sf3b1)
03036 Chromosome and associated proteins [BR:
psex03036
]
120530991 (sf3b1)
Spliceosome [BR:
psex03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120530991 (sf3b1)
Complex B
120530991 (sf3b1)
Complex C
U2 SnRNP specific factors
120530991 (sf3b1)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120530991 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
120530991
NCBI-ProteinID:
XP_039611807
LinkDB
All DBs
Position
6:complement(38656258..38718459)
Genome browser
AA seq
1310 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGKKAALQEGGDGGVGLDSTGYYDQEIYGGSDSRFAGYVTSI
AANEQEDDDDEDSSTSLLGQKKPGYHAPVALLNDIPQSSEQYDPFAEHRPQKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQARTYMDVMREQHLTKEEKEIRQQLAEKAKSG
DLKAVNGSAVSQAAAAKRKRRWDQTAEQTPGSANATPKKVSSWDQADTPGHTPSQSRWDE
TPGRAKGSETPGATPSTRMWDPTPSHTPAGAVTPGRGDTPGHATPGHGGATSSVRKNRWD
ETPKTERETPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQIGSSTPLLT
PGKTPIGTPAMNMSTPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMFPEGYKV
LPPPAGYVPIRTPARKLTATPTPIGGMTGFHMQTEDRSMKTLNDQPSGNLPFLKPDDIQY
FDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQ
ILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGR
EIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKS
KKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAE
AATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILI
REFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLV
DTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLID
GILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADL
ISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIK
DLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIR
RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN
EYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQH
MSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGL
FHPARKVRDVYWKIYNSIYIGSQDALIAHYPRVYNDEKNTYIRYELEYCL
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagattgccaaaacacacgaagatattgaagctcaaatccttgaaatccagggt
aaaaaagcagctctccaagaaggaggagatggcggagtaggtcttgactccacaggctac
tatgaccaagaaatctatggaggtagtgacagtcgatttgctggctatgtgacctcaatt
gctgcaaacgaacaagaggatgatgatgatgaagactcatctactagtctactggggcag
aagaaaccaggctaccatgctcctgtggcattacttaatgatatccctcagtcatcagaa
caatatgatccctttgcagagcaccgcccacagaagattgctgagcgtgaagatgagtac
aaagcccgtcgacggcagatgatcatttcacctgaacgcctcgatccgtttgcagatgga
gggaaaactccagatcctaaacttcaagccagaacctatatggatgtcatgcgtgaacag
cacctaacaaaggaagagaaagaaatacgtcagcaactggccgaaaaagctaaatccggt
gatcttaaagctgttaatgggtcagcagtatcccaagctgcggcagctaaacgcaaacgt
cgatgggatcaaactgctgagcagacacctggcagtgctaatgctactcccaaaaaagtg
tccagttgggatcaggcagatactccagggcatacaccttcacaaagccgttgggatgag
actcctggaagagcaaaaggcagtgagacacctggggccacacccagtacacgcatgtgg
gatccaacacctagtcacactccagctggtgcagttacacctggcagaggtgatacacct
gggcatgctacccctggacatggaggtgcaacatccagtgttcgaaagaatcgctgggat
gagactcccaagacagaaagagagacgcctggtcatggcagtggttgggcagagacccct
cgtacagatcgtggaggtgactctattggggaaacaccaactcctggagccagtaagagg
aaatctagatgggatgagaccccagcaagtcaaattggttcatctactccactccttact
cctggaaagactccaattggaaccccagcaatgaacatgtccacacctacaccaggtcac
ttaatgagcatgaccccggagcagttacaagcctggcgctgggagcgagagattgatgaa
agaaatcgacctcttacagatgaggagcttgatgcaatgtttcctgaaggctataaggtt
ttgccacctcctgcaggctatgtccctatccgcacacctgctcgtaaacttaccgccaca
ccaacccctattggaggaatgactggctttcacatgcagacagaagaccgttccatgaag
actttaaatgaccaaccctctggcaatctgcctttccttaaacctgatgatattcagtac
tttgacaagttattggtagaagttgatgaatctactcttagcccagaggaacagaaggag
aggaagataatgaagttgcttttgaaaattaagaatgggactcctccaatgagaaaggca
gctcttcgtcagattactgataaagccagggaatttggggcagggcccttgtttaatcag
attctgcccctgctgatgtcacccactttggaagatcaggagcgtcatcttctagtaaag
gtcattgacaggatattgtacaaacttgacgacttggtccgaccctatgtacataagatt
cttgtcgttattgagccattgttgattgatgaagattactatgctagagtggaaggcaga
gaaattatttccaacttggcaaaggctgctggcttggccacaatgatctcaaccatgcgt
ccagatattgacaacatggacgagtatgtgagaaacacaactgcccgtgcctttgctgtt
gtggcgtctgcccttggcattccatcacttttacccttcctcaaggctgtatgtaaaagc
aaaaagtcctggcaagcaagacacactggcattaaaattgtccagcagattgccatcctg
atgggctgtgccatcttgcctcatcttcggagtcttgttgaaatcattgaacatggttta
gtggatgagcagcaaaaagtccgtactattagtgcccttgctatagctgctttggctgag
gctgctacaccatacggcattgagtcatttgattctgtcctcaagcctctctggaagggt
attaggcagcacagaggcaagggtcttgctgctttcctcaaagcaattggttatcttata
cccttgatggatgctgaatatgcaaattactatactagagaagtgatgttaatcttgatt
agagaattccaatctcctgatgaagagatgaaaaagattgtgcttaaagtggttaaacag
tgctgtgggactgatggtgtagaagcaaactacatcaaaactgaaatcctgccacctttc
ttcaaacatttctggcagcatagaatggccctggatcgaaggaattatagacaattggtg
gatacgacagtggaattggcaaataaggttggggctgcagaaatcatctcccgcattgtg
gatgatttgaaagatgaggctgaacagtaccgtaaaatggtgatggaaactattgaaaaa
atcatgggaaatcttggggcagcagatattgatcacaaactggaggagcaacttattgac
ggcattctgtatgctttccaggaacagaccactgaggactctgtgatgttgaatggtttt
ggcacggttgttaatgccttgggaaaaagagttaagccatatctccctcagatctgtggt
acagttttgtggcgacttaacaacaagtctgcgaaagtcagacagcaagcagctgatctt
atatctagaactgcagtggtcatgaagacctgtcaagaggaaaaactgatgggtcacttg
ggtgtggttttgtacgagtaccttggagaagagtacccagaggttctgggtagtattctg
ggagccctgaaggccattgtcaatgtcattggtatgcataagatgactccaccaataaag
gacttgctacccagattaactcccattctaaagaataggcatgagaaggttcaagaaaat
tgcattgatctagttggaaggattgctgacagaggagcagagtatgtctcagccagggag
tggatgcgaatctgctttgaactcctggagctgctgaaagctcataaaaaggcaattaga
agagcaactgtgaatacatttggttacattgcaaaagctattggccctcatgatgttctg
gcaacattactgaataatctgaaggtccaggaaagacaaaatcgtgtctgtaccactgtt
gctattgcaatagtggcagagacttgttcaccttttactgttctaccagcacttatgaat
gaatatagagtcccagaacttaatgtgcagaatggtgtgctgaagtcactatctttcctg
tttgagtatattggagaaatgggcaaggattatatttatgctgtcaccccactgctggag
gatgcactgatggacagggatttggtgcacagacagactgcaagtgcagtggttcagcac
atgtctcttggagtctatgggtttggttgtgaagactctctgaatcacttgcttaactat
gtgtggccgaatgtttttgaaacatcgccccatgtcattcaggctgtcatgggagcatta
gaaggtttacgagttgcaattggaccttgtcgtatgttacagtattgcctccagggttta
tttcatccagcaagaaaagtgagggacgtttattggaagatctacaactctatttacatt
ggttcacaagatgctctgattgcacattatccacgtgtatataatgatgaaaagaacacc
tacattcgttatgagctggagtactgcttataa
DBGET
integrated database retrieval system
