Polypterus senegalus (gray bichir): 120531190
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Entry
120531190 CDS
T08668
Symbol
col18a1b
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psex04147
]
120531190 (col18a1b)
00535 Proteoglycans [BR:
psex00535
]
120531190 (col18a1b)
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120531190 (col18a1b)
Exosome [BR:
psex04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120531190 (col18a1b)
Proteoglycans [BR:
psex00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120531190 (col18a1b)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120531190 (col18a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
120531190
NCBI-ProteinID:
XP_039612303
LinkDB
All DBs
Position
6:complement(76396475..76712165)
Genome browser
AA seq
1790 aa
AA seq
DB search
MAKFMRLVSGCLLLFFCVDHANAQWWYSFFAKGTSTVATTKGVTTVTALPENKGPTIFPE
FNSDNGTTLTSLRPDGGTALPTQSTNDGAQLADLGPENVNDVDTESTTILPTGSSISQKT
LTSSSPDSEQPLSNLSFDGVLPTTTLSPDGETTVPIISSDNRTLQPTLHFDNGTTLASVS
TTNQTAFGKLLDIDNETTLNDTTDRMTTSNYEGEMTMALPNATILKPDNGTNLTTENLAG
VGAEILNVAEGIRNFVQHWYKKSTLSPVTTVQTSASIVVLTDVSDSKVSVTSEPKTVMVT
TLQATEPSKVAFPSTLENDVFAKIATDADLLQIVPRDNMEVSGDGENGSSMGESPEEFSL
PKNETIVTAPGNGSVESDLKATNTSTWQHLLLNVSSESEQKIERHLLNNALVHSNETTKR
NDKDEGDVSLLQIIGDPPPEPILKVEGPDNIAGYMFTPEVNTGQLARAHFPAIFYRDFSL
LFHIKPTSVKPGVIFAVTDFQQKLMYVGVKLSAAKGDIRNVLFYYTEPDAESSYQAASFK
ISSPIDEWVRFAIKVKDDEVTFFLNCQQAEVTRIERSPDEMELEGGAGVFVAQAGGADPD
KFEGAIAELRISGDPDLADRQCDEDEGGDDSDDASGDYGSGIEEKIKVQTESTITVKPLV
LPPVTKPDISVKKEKDKEKEKHKPPVAIETEKKHVFEKVESLPPRVKEGIPAQIGLAGPK
GEKGDRGEKGSRGDQGPTGPKGDNGAISTGTQGGKGEPGEKGMKGSAGFGYPGPKGDTGA
PGPPGPPGPPGPAPEVVKRGDGTVVQQVSGPQGPPGKPGQPGAPGPAGADGEPGDPGEDG
KPGTVGPPGFPGLPGDTGPKGEKGEKGEGQPGPRGPPGPPGLPGPPRSDKQTFFDMEGSA
FPDLDSIRGPPGLPGLPGPPGPPGPLSTTGTLGPVGPPGPPGSNGKDGAPGPRGPAGLPG
PPGKDGSAGQPGAKGDKGESGEYGLPGPSGEKGSKGDTGTPGNPGEIGLAGLPGPMGPVG
LPGLPGPPGPPGPGFAFGIDDTEGSAFGVSGPDGKPGLPGVPGMPGLKGDRGIPGLPGLK
GESGIPGAAGKDGQQGLDGFPGPEGLKGDKGDPGERGEPGRDGAGLPGPPGPPGPPGRTI
YEASENHGFNGVPGPEGKQGVNGQAGFPGPMGPKGDRGDRGPPGYGIKGEKGEPGSLIGP
DGNIMNGYLSRAAKGEKGDRGPPGPFGPVGATGHKGEIGLPGRPGRPGLNGFKGEKGEPA
DPSGRYAVVGPPGPPGPPGPPGIAGYDETGGAGRVLTGGKGERGFPGYPGEKGEPGEPGQ
PGLPGQPGSLSNFDVHSLKRELKGERGDVGLKGEKGEPGGGGGYYDSRFSGIQGPPGKPG
PQGLPGPKGDSIRGPPGPPGHQGPPGVGYDGRPGPPGQPGLPGPPGPSASPGASRHSISI
PGPPGPQGPPGPPGYPSGVNIVRNLQTMMSTARNVQEGTLIMILEKGDLYIRVRDGYRQI
MLGEYTPFFGPGGGIFENEVAAVQPPPVILYPHSHPSQSAAETISQGGQDIKQDLPPHSP
VRQPDYGHNVYPSVPDPPRRNPLLPQVSYPDSPQHRPHLSESSSSAIHLHGTGPALHLIA
LNSPQTGDMRGIRGADFQCFQQARAVGLTGTFRAFLSSKLQDLYSIVRRADRNTLPIVNL
KDEVLFDSWESLYNGLDGQMKPNVHIYSFDGRDVLKDNTWTQKMVWHGSNNKGQRMTDHY
CETWRTGVHELTGFASSLEAGRLLQQRPVSCSSSLIVLCIENSFMTQAKK
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtttatgagactggtgagtggttgcctgctcttatttttctgtgttgatcat
gcaaacgcacagtggtggtactcattttttgcaaaaggaacaagtacagtagccacaact
aaaggagtaaccactgtaacggccctgcctgagaataagggtccaaccatttttcctgag
tttaacagtgacaatggaacaacattgacctctttgagacctgatggcggaacagctttg
cctactcagagtactaacgatggggcacagttggctgatttgggacctgaaaacgtaaac
gatgtggacactgaaagcacaacaattttgcccactggtagtagtatcagtcagaaaact
ttgactagttcgagtccggatagtgagcaaccattgtccaatctcagttttgatggtgtg
ctgccaacaaccactctcagtcctgatggtgaaacaactgtgcctatcatcagctctgat
aacaggacactgcagcccacgctccactttgacaatggaacaactttggcatctgttagc
actacaaatcaaactgcttttggtaaactccttgacattgataatgaaacaactttgaat
gatacaactgacaggatgacaacttcaaactatgaaggagaaatgaccatggctcttcct
aatgcaacaattttgaaacctgataatggaacaaacctgacaactgagaatcttgctgga
gttggtgcagagattctgaatgtagctgaaggcatacgcaattttgttcaacactggtat
aaaaaatcaactttgagcccagtaacaactgtacagacatctgcttccattgtggtcttg
actgatgtttcagacagtaaagtgtctgtaacaagtgaacccaagactgttatggttaca
acattgcaagctacagagccgtcaaaagttgcatttccttcaacattggaaaatgacgtt
tttgcaaaaatagccacagatgcagatcttctgcagattgttccaagggacaatatggaa
gtgtctggtgatggagagaatggatcctcgatgggtgagagcccagaggaatttagtctt
ccaaaaaatgaaaccattgtgactgccccaggaaatggatcagtggaaagtgatttgaaa
gcaaccaacacatccacctggcaacatttgcttcttaatgtcagctcagaaagtgaacag
aagattgagaggcacctgctcaacaatgctttggtccactcgaatgagacaactaagagg
aatgacaaggatgaaggggatgtttccctgctccagataattggtgatcctcctccagaa
ccaatccttaaagttgaaggtccagacaatatcgctggatacatgtttacgccggaagtt
aacacgggccagctagctcgtgcccactttcctgccatcttttaccgggacttctctcta
ctttttcacataaaaccaacatctgttaaaccaggtgttatttttgctgtcacagatttc
caacagaagctcatgtacgtaggtgtaaagctttctgctgctaaaggagacattcgtaat
gttcttttctactacactgaacccgacgccgagtcttcataccaggcagcatcatttaaa
atttcttcacctatcgatgaatgggtacgttttgccatcaaagtgaaagacgatgaagtg
acattcttccttaattgtcagcaagcagaagtgacccgtatcgagcgttcccctgatgaa
atggagttggagggaggagctggagtctttgttgcacaagccggaggtgcagatccagat
aaatttgagggtgctattgctgagctaagaattagtggtgatcctgatctggctgataga
cagtgtgatgaagatgaaggaggagatgattctgatgatgcttcaggtgactatggaagt
ggcattgaagagaagattaaagttcaaaccgagtccaccattacagttaaacctttagtt
ctgcccccagtgacaaaacccgatatttcagtgaaaaaggagaaggacaaagagaaggag
aagcataagcctccagtcgccattgaaactgagaagaagcatgtatttgaaaaagttgaa
tctttaccccccagagtcaaagaaggcattcctgctcaaattggtcttgctggtcccaaa
ggagaaaaaggagatcgaggggaaaagggctccagaggcgatcaagggcctactggtcca
aaaggagacaatggtgctatttcaacaggcactcagggtggaaagggggaaccaggagaa
aagggaatgaagggaagtgctggctttggataccctggacccaaaggagatacaggtgcc
cctggaccacctggccctcctggtcctccaggacctgcaccagaagtagttaaacgtgga
gatggtactgtggtgcaacaagtttcaggacctcaaggacctcctggaaaacctggacaa
cctggtgcacctggacctgctggggcagatggggaacctggggacccgggtgaagatgga
aaacctggaactgttggcccacctggatttcctggattaccaggtgacacgggtccaaaa
ggagagaagggagagaaaggagaagggcagccaggaccaagaggaccacctggacctcct
ggcctcccaggacccccacgctctgacaaacagaccttttttgacatggaaggctctgca
tttcctgatttggacagcattaggggtcctcctggactgccaggtttgcccgggccccca
ggtccaccaggccctctgagcactactggaactctagggccagttggaccaccagggcct
ccaggcagtaatggaaaagatggagctcctggtccccgtggtcctgcaggtcttccagga
cctcctggtaaagatgggagcgctggacagcctggagccaaaggagacaagggcgagtca
ggtgaatatggacttccaggaccaagtggagaaaaaggttcaaagggtgatacgggcact
ccaggaaatcctggtgaaattggattggctggacttcctggacccatgggccctgtggga
ctaccagggctaccgggacctccaggacctccaggaccaggatttgcatttggcattgac
gatacagaaggctcagcatttggagttagtggaccagacggtaaaccaggactacctgga
gttccaggcatgcctggactaaagggtgatcgtggaattcctggtttacctggattaaag
ggtgaatctggaatacctggagcagcaggaaaagatggtcaacaagggttagatggcttc
cctggaccagaggggctgaagggagataaaggagacccgggtgaaagaggggagccagga
agagatggagccggactgccaggcccacctggaccacctggtcctcctggaagaaccatt
tatgaagcatcagagaatcatggatttaatggagtaccaggaccagagggaaaacaaggt
gtaaatggacaagcaggattccctggccccatgggaccaaaaggtgatagaggagaccga
ggaccaccaggatatggaattaagggagaaaagggtgagcctggtagcttaataggccct
gatggaaacatcatgaatgggtacctgtctagagctgctaaaggagaaaagggtgacaga
ggacctccaggaccttttggccccgtgggcgcaactggacacaaaggtgaaattgggttg
cctggcaggcctggccgtccaggacttaatggattcaaaggagaaaagggagagcctgca
gaccccagtggcagatatgctgtggtgggtcctccaggtcctcccggtccacctgggcct
ccagggattgcaggatatgacgaaacgggtggagcaggtcgtgtgctcacaggtggtaaa
ggagaaagaggattcccagggtatccaggagagaaaggagagccaggagaaccaggacag
cctggacttcccggacaacctgggtcactgtcaaactttgatgttcactcattaaagaga
gaactgaaaggggagaggggagacgtgggactgaaaggagagaagggagaaccaggagga
ggaggaggatattacgattcccgattctcaggaattcaaggccctcctggaaaaccaggt
ccccaaggactcccaggccctaaaggtgattcaattaggggccctccaggtccaccaggg
catcaaggaccccctggcgtcggttatgatggccgcccaggtcctccaggccagccaggc
ttaccaggacctccaggaccaagtgcctcaccgggagcttccaggcacagtattagcatt
cctggcccacctggcccccaaggccctcctggaccacctggatacccgtcaggggtgaat
attgtacgaaatttacagaccatgatgagtacagcaagaaatgtgcaggagggtacttta
attatgattttggaaaagggagacctttacatccgagttcgggatggatatcggcaaatt
atgctaggagaatacactccattttttggaccaggtggtggaatatttgaaaatgaagtg
gccgcagttcaaccacctcctgttatactttatccccactcccacccttcccagagtgct
gcagaaactatttctcagggtggccaagacataaagcaagacctaccaccccactctcct
gtacgccagccagattatggccataacgtctatcccagtgtaccggatccacccagaagg
aatccgctgttgccccaagtcagctatcccgattcaccccaacacagaccacatctgtct
gaatcgtcttcctctgctattcatttacatggcacagggcctgctttacatctgatagca
ctcaacagtcctcaaacaggagacatgcgaggcattcgaggagccgattttcagtgtttc
cagcaagccagagcagtgggactgacgggcacattccgggccttcctctcatctaaactt
caggacctctacagcattgtgcgcagggcagaccggaatactctgccaatagtcaatctg
aaggatgaagtgctgtttgacagctgggagtcgctatataatggtctagatggccaaatg
aaaccaaatgttcacatttactcctttgatggtcgcgatgtccttaaagataatacatgg
acccagaaaatggtctggcatggctcaaacaacaaaggtcagcgcatgacggaccactac
tgtgagacgtggaggacgggagtccatgaactgaccggatttgcctcgtcgcttgaggca
ggacgactactgcagcagcgtcctgttagctgttccagttctttaattgttctctgcatt
gagaacagcttcatgacacaagctaaaaagtaa
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integrated database retrieval system
