KEGG   Polypterus senegalus (gray bichir): 120531291
Entry
120531291         CDS       T08668                                 
Symbol
rabgef1
Name
(RefSeq) rab5 GDP/GTP exchange factor
  KO
K20131  Rab5 GDP/GTP exchange factor
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex04137  Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:psex00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    120531291 (rabgef1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:psex04131]
    120531291 (rabgef1)
Membrane trafficking [BR:psex04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab associated proteins
    120531291 (rabgef1)
 Protein recycling
   Other Rab GTPase associated proteins
    120531291 (rabgef1)
SSDB
Motif
Pfam: VPS9 DUF5601 zf-A20 PRESAN Phage_int_SAM_4 Mucin
Other DBs
NCBI-GeneID: 120531291
NCBI-ProteinID: XP_039612490
LinkDB
Position
6:95026301..95119025
AA seq 491 aa
MSQKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYQRARQKQIQEDWALAER
LQREEEAAYASSQGAQTQPTLAPFSKFEDKKTNVTTRKVTTVKKFFSPSSRAAPKKETQE
AKAPSPSISRQSSVETDKVSRDFIDFLKNLQKPGRDIHKQCRIFLETMANKKEVSAEEQS
EYVQDFYQNVAEKLQVHFKGSSERVERVMDQVEKYIMTRLYKSVFCPETTDDEKKDLAVQ
KRIRALHWVTLQMLCVPVNEDIPEVSDILVKAITDIIEMDSKRVPRDKLACITKCSKHIF
NAIKITKKEPASADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNL
CCAVAFIEKLDAQSLNLSPEDFERYMSGQASPRRQDQDGYPSHVNNSPSLGQAYQNLERL
SGLGERQERVLEGARRLERDLIEWSDGVAREVQDILDKYPLEICHPASAIDSDNVENDRL
PPPLQPQVFAG
NT seq 1476 nt   +upstreamnt  +downstreamnt
atgagccagaaatcagagcgcagagggattcatgtggaccagtctgaactgctttgcaag
aaaggatgtgggtactacgggaatcctgcctggcaaggtttctgttcaaaatgttggcgt
gaagagtaccagcgtgctcggcagaagcagattcaggaggactgggcacttgccgaaaga
ctgcaaagagaggaggaagcagcctatgccagcagtcagggagcacagactcagccaacc
cttgcccctttttcaaaatttgaagacaagaagacaaatgtaacaactcgtaaagtgact
acagtcaagaagtttttcagcccctcatcgcgagctgcccccaaaaaagagacccaggag
gcaaaagcgccaagtccatctatcagtcgacagtccagtgtggaaacagacaaggtttct
cgtgactttattgacttcctgaaaaacctgcaaaagcctggccgggacatacataagcag
tgtcgtattttccttgaaacaatggctaataagaaggaagtgagtgcagaagagcaatct
gagtatgtacaagatttctatcagaatgtggcagagaagcttcaggtgcattttaaaggt
tcttcagaacgtgtggaacgggttatggatcaagttgaaaaatacatcatgacacgtctg
tacaaaagtgtgttctgccctgaaaccacagatgatgaaaagaaagatctggcagtgcag
aaacgcatcagggctctgcactgggttacgctgcagatgttgtgtgtgccagtcaatgaa
gatattcctgaagtatcagatattttggtgaaggctattacagatataattgagatggac
tcgaagcgtgtgcccagagacaagctggcctgcatcacaaagtgcagcaagcacatcttc
aatgccatcaagatcacaaagaaggaacccgcctcagccgatgactttctaccaaccctt
atctatatagtgctgaaggcaaaccctcctcgcctgcagtccaacattcaatatatcaca
agattttgcaacccaagtcgactcatgacaggagaagatggttactacttcacaaacctg
tgttgtgctgttgccttcatcgagaaactggatgcccagtccctcaatctgagccctgag
gattttgaacgctacatgtctggacaggcatcaccacgcaggcaggaccaagatggctac
ccgagtcatgtgaacaacagtccaagtttgggtcaggcttaccagaaccttgagcggctc
tctgggttgggcgaacgacaagagcgagtgctagagggggcacgccggcttgaaagagac
cttatcgaatggagtgatggagtggctagggaagtgcaagacattctggacaagtaccct
ctggaaatctgtcacccagcatcagccattgactctgataatgtggagaatgatcgattg
ccaccccctctccaacctcaggtcttcgctggctag

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