KEGG   Polypterus senegalus (gray bichir): 120531315
Entry
120531315         CDS       T08668                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex03030  DNA replication
psex03410  Base excision repair
psex03420  Nucleotide excision repair
psex03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psex00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120531315 (rfc2)
   03410 Base excision repair
    120531315 (rfc2)
   03420 Nucleotide excision repair
    120531315 (rfc2)
   03430 Mismatch repair
    120531315 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psex03032]
    120531315 (rfc2)
   03036 Chromosome and associated proteins [BR:psex03036]
    120531315 (rfc2)
   03400 DNA repair and recombination proteins [BR:psex03400]
    120531315 (rfc2)
DNA replication proteins [BR:psex03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120531315 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    120531315 (rfc2)
Chromosome and associated proteins [BR:psex03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120531315 (rfc2)
DNA repair and recombination proteins [BR:psex03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120531315 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    120531315 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_lid_RFC1 RCF1-5-like_lid nSTAND_NTPase5 AAA_22 AAA_14 Mg_chelatase AAA_16 Viral_helicase1 Rad17 AAA_11 MipZ RuvB_N AAA_assoc_2 AAA_19 nSTAND3 AAA_24 AAA_28 AAA_5 ABC_tran AAA_18 AAA_25 AAA_30 Gp44_lid RNA_helicase MeaB SLFN-g3_helicase AAA_23 DNAX_ATPase_lid NTPase_1 MCM FtsK_SpoIIIE
Other DBs
NCBI-GeneID: 120531315
NCBI-ProteinID: XP_039612535
LinkDB
Position
6:97156065..97201357
AA seq 347 aa
MEVDVKETEETQSKTDSGPSKTSGTTYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREG
NVPNIIIAGPPGTGKTTSILCLARALLGPAMKEAVLELNASNDRGIDVVRNKIKMFAQQK
VTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAV
LRYTKLTDAQVLARLMEVVESEKVQVTDDGLEAVIFTAQGDMRQALNNLQSTYSGFGFVN
SENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKIVAHLWKLGYSPEDIIGNIFRVCKTFQ
MPEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLGRLCMKTAAPTAS
NT seq 1044 nt   +upstreamnt  +downstreamnt
atggaggttgatgtaaaggagaccgaagagacgcagtccaaaacggattcagggccaagt
aaaacatcaggaacgacatacgagctgccctgggtagagaaatacagaccattaaagctg
aatgaaattgttgggaatgaagaaacagttagcaggttggaggtatttgctcgggaggga
aatgttccaaacattatcattgctggtccccctggcactggaaagacaacaagcatatta
tgtcttgcaagggcactgctgggtccagccatgaaggaggctgtcctggaactcaatgct
tctaatgacagaggcattgatgtagtaagaaataagattaaaatgtttgcccaacagaag
gtaactttaccaaaaggcaggcacaagatcataatcttggatgaagctgacagtatgact
gatggagctcagcaagccttaagaagaacaatggagatctactctaagacgactcgcttt
gcattagcttgtaatgcttctgataagattatcgagccaatccagtctcgttgtgcagtg
cttcgctacaccaaactgacagatgctcaagttttggctcgcttgatggaagtggtggag
agtgagaaagtacaggtcacagatgatggactggaggccgttatcttcactgcacaagga
gatatgagacaggcattaaacaacctgcagtccacctattctggctttggatttgtcaac
agtgagaatgttttcaaggtatgcgatgagcctcatccattgttagtaaaagagatgatt
caacattgtgttaatgccaatattgatgaagcgtataagattgtggcccacctttggaag
ctgggctactccccagaagatattattggaaacattttcagagtctgcaagacttttcaa
atgccagaataccttaaactggagttcattaaggagattggatatacccacatgaagatt
gccgagggagtaaacagcttgttgcaaatggcagggctcctgggcagactctgcatgaag
actgccgccccaaccgccagctaa

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