Polypterus senegalus (gray bichir): 120531337
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Entry
120531337 CDS
T08668
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
120531337 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psex03400
]
120531337 (lig3)
Enzymes [BR:
psex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120531337 (lig3)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
120531337 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Adenylate_cycl
Motif
Other DBs
NCBI-GeneID:
120531337
NCBI-ProteinID:
XP_039612575
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All DBs
Position
6:complement(99315694..99374522)
Genome browser
AA seq
1028 aa
AA seq
DB search
MVSFRAGLIFLAARTFYYREALNLRKSLSIFYVLNVHCVSKRSVFLFTYPFQPFGLSPTK
GVVQNKIKHTLDSSVSFYFRDSCLRLYSTKYSNMAEQRYCVEYAKRGTAGCKKCKDKIMK
GLVRIGKIVPNPFSESAGEMKEWYHVKCMFEKLEKARATTKKIDDLTELEGWEELQDEEK
NLINKHIEELASKVAASPKKKVQAKLTPAGRLTSPPQQLSSPSPRKFSGFSATKAESSSS
GTVPSTSSLSAQLCDPSHKDSLLREFRKLCAMVADNASYNTKTQIIQDYLKKGSSGEGFR
GDLYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIFNCNQEEMVRDLEKGDVSETVRIFFEA
STSFPPSAKSQLTIQEVDQFLSRLSQLTKEDDQQRELEDIARRCTGNDLKCIIRLIKHDL
KMNSGAKHVLDAVDPNAYDAFKASRNLVDVIERVLQNQQEATKTSGPRKILSVEATLMTP
VQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDQFTYFSRSLKPVLPHKVAH
FKEFIPLAFPGGNSIILDAEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NGVSLMDRPLCERRKFLHDNMVEIPNRILFSEMKHVTKGSDLADMINRVIREGLEGLVLK
DVKSLYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGTGSKGGMMSIFLMGCYDPSV
NKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKNYYPDFIVRDPKTAP
VWEITGAEFSKSEAHTANGISIRFPRCTRIRDDKDWKNATNLPQLQELFRISKEKADFDV
KAGPSKPNDDRGSSEGDSGSGSLSSTPPGSRPDTPRAHATPKKAGTKGSGTSPKHTSSVK
GQSSPDKKAVKRKQPSETSNPKKPKQEPVQCHKQNQAPTVMLAPANSQQNKTLLDIFTGV
KLYLPKAVGDFNKLRRYFIAFNGDLVPEYDVGTATHMMGDHEETTTAKRVSSEWIWECIR
KRRIVPPC
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtttcagagcaggcctaatttttcttgcagcaagaacattctactatagagaa
gcactaaacctgaggaagagtctgtctatattttatgtgctcaatgtacattgtgtcagt
aaacgttcagtatttctgtttacatatccatttcagccttttggactctcgcctacaaaa
ggagttgtccaaaacaagataaaacatactttggactcctctgtatcattctacttcagg
gattcctgcctcagactttactccactaaatacagcaacatggcagaacaacgttactgt
gtagagtatgccaagcgtggcacagctggctgcaagaagtgtaaagacaagatcatgaag
ggcctggtgcggattggcaagattgtcccaaaccccttttctgagtctgcaggtgaaatg
aaagaatggtaccatgtcaaatgcatgtttgagaagctggagaaagctcgagccaccact
aagaagattgatgaccttacagaacttgaaggctgggaggagttacaagatgaggaaaag
aatttgattaataagcacatagaagagttggcatcaaaggttgcagcttccccgaaaaag
aaggttcaggccaaactgactcccgcaggtcggctgacatcgccaccacagcaactgtct
agtccttctccacgcaagttctctggattttcagcaacaaaagctgagtcctccagctct
ggcacagttccatcaaccagttcactatctgctcagctctgtgaccctagccacaaagac
tctttgctgcgagaatttaggaagctgtgtgccatggttgctgacaacgcaagctacaat
actaagacccagataatccaagactacctgaaaaaggggtccagtggagagggttttcgt
ggagatctgtacctgacagtgaagctgctactaccaggagttattaagactgtctacaac
ttgaatgataaacagattgtcaaactgttcagtcgcatcttcaactgcaaccaagaagag
atggtccgggatcttgaaaagggagatgtttctgagacagtgaggattttctttgaagca
agcacgtcattccctccatcagcaaaaagtcagctaacaatccaagaagtagatcagttt
ttgagccgtctatcacagctcactaaagaagacgatcagcagagggaattagaggacatt
gcccgtaggtgcaccgggaatgatcttaaatgtatcatcaggttaattaagcatgatctg
aagatgaactcaggagccaaacatgtcttggatgcagtggatcctaatgcctatgatgca
tttaaagcttctcgaaatttggtggatgttatagaaagagtcctacaaaatcagcaggag
gcaacaaagacatctggaccacgaaagatactaagtgtggaagctactttgatgacacca
gtacagcccatgttggcagaagcatgcaagtcaattgagtatgctatgaagaaatgtcca
aatggaatgtattctgagataaagtatgatggcgagcgagtacaggtgcacaagaatggt
gatcaattcacttactttagccgaagtttaaagcctgttttgccacataaggtggcccat
tttaaagaatttattccactggcttttcctggtgggaacagcattattctagatgcagag
gtgctgctgattgacactaaaacgggcaaacctctgccctttggaactctgggcgtgcac
aagaaagctgcatttcaggatgcgaatgtttgcctttttgtgtttgactgcatttatttc
aatggggtcagtcttatggacaggcctctatgcgaacgaaggaagtttcttcatgataat
atggtggagatcccaaatcggattcttttttcagaaatgaagcatgttactaaaggctct
gatttagctgatatgatcaatcgagttattcgggaaggtctggaaggactggtgctcaaa
gatgtcaagagtctttatgagcctggcaagcgccactggctaaaggtaaaaaaggactat
ttgaacgaaggagcaatggcagacacagctgacttggttgttttgggtgcattctatgga
acaggctctaaagggggaatgatgtcaatctttctcatgggctgctatgacccaagtgtt
aataagtggtgcacagtaaccaaatgcgcaggtgggcatgatgatgccacactggcacgg
ttgcagaaggagctagacatggtaaaaatcagcaaggacccaagtaaaattccaagttgg
ctaaaaatcaacaaaaactactacccagatttcattgtccgtgatccaaagacagcaccc
gtatgggaaatcactggagctgagttctcaaagtctgaagcacacacagctaatggcatt
tccattcgtttcccacgctgcacacgcattcgtgatgacaaagactggaaaaatgccacc
aaccttccccagctccaggagctgttcagaatttctaaggaaaaagctgattttgatgtg
aaggccggcccctcaaaacctaatgatgacagggggtcttctgagggggacagcggaagt
ggatcattatcttccactcctccaggctctcgtcctgacacaccacgagcccatgctacc
cctaaaaaggcagggaccaaaggcagtggaacatctccaaagcatacctcctcagtaaaa
ggacagagctcaccagataaaaaggcagtgaaaagaaagcaaccgtcagagacatcaaat
cccaaaaagccaaaacaggaacctgtacaatgccataaacagaatcaggctcccaccgtg
atgcttgcaccagcaaacagccagcaaaataagactttactggacatcttcactggagta
aagctgtacctaccaaaagcagttggtgattttaataaacttcggcgttattttattgct
ttcaatggagaccttgtgcctgaatatgatgtaggcacagcaacacacatgatgggagat
catgaagaaactaccacagcaaaacgtgtctcctcagagtggatctgggaatgtatccgg
aaaaggcggattgtacctccatgttaa
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