Polypterus senegalus (gray bichir): 120531566
Help
Entry
120531566 CDS
T08668
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120531566 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120531566 (prpf8)
Spliceosome [BR:
psex03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120531566 (prpf8)
Complex C
U5 SnRNP specific factors
120531566 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
120531566
NCBI-ProteinID:
XP_039613017
LinkDB
All DBs
Position
6:complement(125984940..126016011)
Genome browser
AA seq
2336 aa
AA seq
DB search
MATPAFPYTFVPPGIPTPPAPIPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGYVDAQKE
DMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVL
YHITGAISFVNEIPWVIEPVYIAQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYA
DNILDVEPLEAIQMELDPEEDSSVADWLYDHQPLRDNTKFVNGSTYRRWQFSLPMMSTLY
RLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDI
NKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPI
SHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTR
RALDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKST
KFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSR
FGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLM
RQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQ
FEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESWRC
WKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRL
TRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLL
ILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFM
DLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGI
NNLQDVWETIEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINY
KDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIAT
EAAHPIRLYCRYIDRIHLFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDAR
MRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPK
CRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKI
VNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTP
KELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEF
IDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVR
TDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWE
GLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTG
IFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKS
YKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERY
ARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSGYGNWFPGSKPLIQQAMAKIMKANPA
LYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLT
TKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPK
QIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNL
YDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKV
EVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQL
TATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKE
TGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTVHL
PNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTSHAKIMADNPSWDGEKTIIITCSFT
PGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQVSW
NYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMFT
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atggctacccctgcatttccgtatacctttgtccctcctgggatacccactcctcctgct
ccaataccggattatatgtcagaagaaaaactgcaagagaaagcacgtaagtggcaacag
ttgcaagcaaaacgttatgcagagaaaagaaagtttgggtatgttgatgcccagaaagaa
gacatgcctcctgaacatgtccgtaagatcattcgtgaccacggtgacatgaccaacaga
aaattccgccatgacaagagggtttatttgggtgctcttaaatatatgcctcatgcagtt
ctgaaactcttggaaaacatgcctatgccgtgggagcagatccgtgatgtaccagtgctc
tatcacataactggtgcaatttcatttgtaaatgagattccttgggtcattgaaccggtg
tacattgcacaatggggctcaatgtggattatgatgcgtcgagaaaagagagacagacgg
catttcaaacgaatgcgtttcccaccttttgatgatgaggaaccccctttagattatgct
gacaacattttagatgttgagcctctggaagccattcaaatggagctggatcctgaagaa
gattcctcagttgctgattggctatatgatcaccagcctcttagagacaacaccaagttt
gtgaatgggtctacatataggcgctggcagttttctcttccaatgatgtcaactctttat
cgtttggccaatcagcttctaacagacttggtggatgataattatttctatctttttgac
ctcaaagccttcttcacctccaaagcacttaatatggccataccaggaggacctaaattt
gagccacttgttagagacatcaacttgcaggatgaagactggaatgagtttaatgacatc
aacaaaatcatcatcagacagccaataagaacggagtacaagattgcatttccatattta
tataataacttacctcatcatgttcatcttacttggtatcacaccccaaatgttgttttc
attaaaactgaagatcctgaccttccagccttttattttgaccccttgatcaatccaatt
tcccacaggcactctgtcaagagtcaagagcctttgcctgatgatgatgaggagtttgag
ttgccagagtttgtagagccatttttgaaagatacccctctttacactgacaatacagcc
aacggtattgctttactgtgggctcctcgtccgtttaatctacgttctgggagaacccgc
agggctctagacatcccactcattaaaaactggtatcgtgagcattgtccagctggacag
ccagtgaaagtacgtgtctcctaccagaagctacttaagtactatgttttgaatgccctc
aaacatcggccacctaaagcacaaaaaaaaagatatttatttcgctctttcaaatccaca
aaatttttccagtctacaaagttggattgggttgaagttggccttcaggtatgtagacag
ggatacaacatgctgaacctcttgatccaccggaaaaatcttaactaccttcatctggat
tacaatttcaatctaaagcctgtgaagactctcaccacaaaggagcgtaaaaagtctaga
tttggcaatgcgttccacttgtgtcgagaagtgttgcgtctcagcaagcttgtggttgac
agccatgtgcagtacagactgggaaatgttgatgctttccagctggcagatggcctgcag
tatatctttgcccatgtgggtcagttgactggaatgtaccgttataagtacaagctaatg
agacaaattcgaatgtgcaaggacttgaaacatcttatatattacagatttaacactggt
cctgttggaaaaggccctggctgtggattctgggctcctggctggagagtctggctcttt
ttcatgagagggataacaccacttctggaaaggtggttaggaaacctgcttgccaggcag
ttcgaaggacgtcactcaaagggagtggcaaagactgtcacaaaacagcgtgtggagtcc
cactttgatctggaattgagagctgctgtaatgcatgacatcttagatatgatgccagag
ggcatcaagcaaaacaaggcaaggaccattctgcagcatctaagtgaatcttggagatgc
tggaaagccaatattccttggaaggttcctggcctccccaccccaattgagaatatgatc
cttcgctatgtaaaggctaaagctgattggtggacaaacacagcccattataacagagaa
cgaattcgtcgaggggcaactgttgacaagaccgtttgcaaaaagaatttgggtcgcttg
accagattatacctcaaagcagagcaggaaaggcaacacaattacctgaaggatgggccc
tacatcactgctgaggaggctgtggctatctataccaccacagttcactggttggagagc
cgaagattttcccctatcccattccctcctctttcatacaaacatgacacaaaactgctt
attctagccttggagaggctcaaggaggcttatagtgtgaaatctcgtcttaatcaatca
cagcgagaggagctgggtttaattgaacaggcttatgataaccctcatgaggcgctatca
agaatcaagcgtcatctccttactcagcgagccttcaaagaggtgggaattgaatttatg
gacctgtatagtcacttggttcctgtgtatgacgttgagcctttggagaagatcaccgat
gcttacctggaccagtacctgtggtatgaagctgataagcgcaggctttttccaccttgg
atcaagccagcagacactgagccgccaccacttctggtctacaagtggtgtcaaggcatc
aacaatttgcaggatgtttgggaaacaatagaaggagaatgcaatgtaatgctggagtct
cggtatgaaaaaatgtatgagaagattgatctgacacttttgaacagactgcttcgactc
attgttgatcacaatattgctgattacatgacggccaaaaacaacgttgttattaactat
aaggatatgaaccacacaaattcttatggtattattagaggtctacaatttgcctctttc
atcgtccagtactatggcctggtaatggatctgctggtgcttggcctacatcgtgccagt
gagatggcaggacccccacaaatgcccaatgattttcttagctttcaagacattgctact
gaggcggctcaccctattcgattgtactgcagatacattgatcgaattcacctttttttc
agattttcagctgatgaagcaagggatctgattcagagatacctgactgagcatcctgac
cctaacaatgaaaatatcgttgggtacaataacaagaagtgctggcccagagatgccaga
atgagactaatgaagcatgacgtcaatcttggtcgggctgtcttttgggatatcaagaat
cgacttcctcgttctgtaacaacagtgcaatgggaaaatagctttgtatcggtgtacagt
aaagacaatccaaacctgctctttaacatgtgtggctttgagtgccgcatcttgccaaaa
tgccgcaccagctatgaggaattcacacacaaagatggagtctggaatttacagaatgag
gtaactaaggagagaactgctcagtgcttcttgagagttgatgatgaatctatgcagcgt
ttccataacagagttcgtcaaatactcatggcttctggatccacaactttcacaaagatt
gtaaacaagtggaatacagctttgattggcttgatgacctatttccgagaggctgtggtg
aatacacaagaacttttggacttgcttgtaaaatgtgagaataagattcagacaagaatc
aagattgggctcaactccaaaatgccaagcagatttcccccagttgtgttttatacgcca
aaggaactgggaggactaggaatgctgtcaatggggcatgtcctcattccacagtctgat
ttaaggtggtccaaacagactgacgttggtatcacccatttccgttctggcatgagtcat
gaggaggaccagctaattccaaatttatatcgttacatccagccctgggagagtgagttt
attgattctcagagagtgtgggcagagtatgcattgaagagacaggaagccattgcccag
aacagacggttaacactggaggacctggaagattcctgggatagaggtatcccaagaatt
aatactctgttccagaaagacaggcacacccttgcttatgataagggctggagagtgaga
acagacttcaaacaataccaggtcctgaagcaaaatccattctggtggacgcatcagcgc
catgatggaaagttgtggaatctaaacaattacagaacagacatgatccaggctctggga
ggtgtagagggtattctggagcatacactgtttaaaggaacctacttccccacctgggag
ggtctcttctgggagaaagcaagtggatttgaagaatccatgaagtggaagaaacttaca
aatgcccagaggtctggtctgaatcaaattcctaatagaaggttcacactttggtggtca
cccactatcaatagggctaatgtatacgtaggcttccaggtgcagctagatctgactggg
attttcatgcatggcaaaattccaacactcaaaatttcactgattcagattttcagagcc
cacttgtggcagaaaattcatgagagcattgttatggatttgtgtcaggtatttgatcag
gaacttgatgcacttgaaattgaaactgtacagaaagaaacaatccatccccgaaagtcc
tacaaaatgaactcctcctgtgcagacatcctcctctttgcctcttataaatggaatgtt
tcacggccatctcttcttgctgattcaaaggatgtgatggacagtacaacaactcaaaaa
tactggattgatatccagctgcgttggggtgactacgattctcatgacatagagcgatat
gccagggccaagttcctcgattacacaacggacaacatgagtatatacccatcacccaca
ggcgttcttattgctattgacctggcatataacctgcacagtggctatggcaactggttt
ccaggaagtaaaccattgatccagcaagcaatggcaaagataatgaaagccaatccagct
ctgtacgtattgagggagcgaatccgcaaaggtctccagctgtactcttctgagcctact
gagccgtatctgtcctcccagaactatggggagctgttctccaatcagatcatctggttt
gtggatgacacaaatgtgtacagagtgaccatccacaagactttcgagggcaacttaaca
acaaagcccatcaatggagcaatttttatctttaaccccagaactggtcagctgttcttg
aagattatccacacatcagtatgggctgggcaaaagcgtcttggacagcttgctaagtgg
aagactgcagaagaagttgctgcccttattcgttctctacctgtagaagaacagccaaaa
caaattatagttactcggaaaggcatgttggatccactagaggtccacttgttggatttc
cctaacattgtgatcaagggatcggaattgcagcttcccttccaagcatgtctgaaggtg
gaaaaatttggagatctgatactaaaggctactgagccgcagatggtcttattcaacctg
tatgatgactggctgaagacgatctcgtcttacactgcattctctcgcttgattttaata
cttcgggccttgcatgttaacaatgaccgtgcaaaagtaattttgaagccagacaagacc
acaatcacagagccacatcatatctggccaacacttacagatgaggagtggatcaaggtt
gaggtgcaactcaaggaccttatcttggctgactatggcaagaagaacaatgtgaatgta
gcttctcttacccaatcagagatccgtgacatcatcctgggtatggaaatctctgcaccc
tcccagcaacgccagcagatcgctgaaattgagaagcagaccaaagaacaatctcagcta
actgctacacagacgcgcactgtgaataaacatggtgatgagatcataacatccaccaca
agcaactatgagactcagaccttttcttctaaaacagagtggagagttcgagcgatttct
gctgctaacctacatctgcgcacgaatcacatttatgtctcttcggatgatattaaggag
actggttacacctacatcctacccaagaatgtcctgaaaaaatttatttgtatctctgac
cttcgtgctcagattgctggctatctgtatggcaccagcccccctgacaatccccaggtg
aaggagatacgttgcattgtgatggtacctcagtggggaacccaccagacagttcacctt
ccgaatcagcttccacagcatgaatatcttaaggaaatggaacctcttggttggattcac
acacagcctaatgaatcgcctcagctatctccacaagatgtcacaagccatgccaaaatc
atggcagataacccatcctgggatggagaaaagaccatcatcattacttgcagcttcact
ccaggctcttgtaccctcacagcatataagctgacacctagtgggtatgaatggggtcgt
cagaacacagacaaggggaacaaccccaaggggtatttaccctcacattatgagagggtg
cagatgctgctgtcggatcgcttccttggtttcttcatggtacccgctcaagtctcctgg
aattacaactttatgggtgtccgccatgaccccaacatgaagtacgagctgcagttgtcc
aacccgaaggagttctaccatgaagtccacagaccatcacactttctgaactttgcctct
ctgcaagaaggggaaatctataatgctgacagagaagacatgttcacttaa
DBGET
integrated database retrieval system
