Polypterus senegalus (gray bichir): 120531627
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Entry
120531627 CDS
T08668
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03030
DNA replication
psex03420
Nucleotide excision repair
psex03430
Mismatch repair
psex03440
Homologous recombination
psex03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120531627 (rpa1)
03420 Nucleotide excision repair
120531627 (rpa1)
03430 Mismatch repair
120531627 (rpa1)
03440 Homologous recombination
120531627 (rpa1)
03460 Fanconi anemia pathway
120531627 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120531627 (rpa1)
03032 DNA replication proteins [BR:
psex03032
]
120531627 (rpa1)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120531627 (rpa1)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120531627 (rpa1)
DNA replication proteins [BR:
psex03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
120531627 (rpa1)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
120531627 (rpa1)
MMR (mismatch excision repair)
120531627 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
120531627 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF7540
A_deaminase
IBR
Motif
Other DBs
NCBI-GeneID:
120531627
NCBI-ProteinID:
XP_039613149
LinkDB
All DBs
Position
6:complement(132281269..132364027)
Genome browser
AA seq
606 aa
AA seq
DB search
MDVRLTQGAIEAIAKGNQLQNPILQVVSTRRIESANGPPRYRLLMSDGVHSLSSFMLGTQ
LNSLLEEELIAVNCICLIKKQVINTLKDGRRVVIILDLDVVKTGDVTGRIGDPVPYTEGQ
SQMSSTNVNNPTSKPLQQRNSYASEASTNRVPAKEVAKPKAIGAPPNTPGGSQSKVVPIA
GLNPYQSKWTIRARVTNKSAIRSWSNSRGDGKLFSMEVVDESGEIRITGFNEQVDKFFSL
IEINKVYYISKGTLKIANKQYTSVKNDYEMTLNNETSIVPCDDAMDVPMVQFEFIPIGEL
ENKEKDSVVDIIGVCKSYDDVTKITTKSSREVSKRAIHLIDRTGKVITTTLWGEEAERFD
GSSQPVVAIKGARLSDFGGRSLSVLFSSTLLMNPDIPEAFKLRGWFDSEGHALEGTSMSE
SRSGTTAGGSSNWKSLMEVKSENLGHGEKADYYTSVATVMYLRKENCLYQACPTQDCNKK
VVDQQNGFYRCEKCDKEFPNFKYRLILSANIADFGDNQWVTCFQEAAEAILGQNAAYLGE
LRDSNEQAFEEVFQNANFRTYIFRNRVKLETYNDESRIKATVLDVKPIDHKEYSKRLIMN
IRKLAV
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgcggcttactcaaggggctattgaggccattgcaaagggaaaccagttgcaa
aaccccatactccaagttgttagcacaaggcgcattgagagtgcaaatggaccacctcgg
tatcgtctgctaatgagtgatggtgttcactcgttatcctcttttatgttgggaacacaa
ttaaatagtttgctggaggaagaattgattgctgtgaattgcatttgcctcatcaaaaaa
caagtaataaacacattgaaagatggaagacgggttgtgataattttagatttggatgtc
gtgaaaaccggagatgtgactggcaggattggagatcctgtgccttatactgaaggtcaa
tcacagatgtcctctacaaatgtgaataatccaacgtcaaaacctcttcaacagcgtaat
tcatatgcttctgaggcatctacgaatagggttccagccaaagaggttgcaaagccgaaa
gcaattggggccccacccaatactcctggtggctcacagtctaaagttgtgccaattgct
ggcctcaacccatatcagtccaaatggactatcagagccagagtgactaataagagtgca
atccgatcttggagtaactctagaggggatggcaagctgttctccatggaagtagttgat
gaaagtggagagatcagaataactggtttcaatgagcaagttgataagttcttctctcta
attgaaattaataaggtttactacatctccaagggtactttgaagattgctaataaacag
tacacatcagtaaaaaatgattatgaaatgacgcttaacaatgaaacatcaattgttcca
tgtgatgatgctatggatgttcccatggtacagtttgagttcattcctattggagaattg
gaaaataaagaaaaagactcagtagttgatatcattggagtctgtaaaagttatgacgat
gttacgaaaattacaacaaaatcatcacgagaggtgtccaagagggcaatccatctgata
gaccgaactgggaaagttatcacaacaacactgtggggtgaagaggctgagaggtttgat
ggctcaagccagccagttgtagcaattaaaggtgcacgtttgtcagattttgggggtcga
tccctctcggtgctcttttctagcactcttcttatgaaccctgacatcccagaggctttc
aaactccgtgggtggtttgactcagagggtcatgctttagaaggcacatctatgtcagaa
tccagaagtggaaccacagcaggtggaagttcaaactggaaatcactaatggaggtgaag
tcagaaaaccttggtcatggagaaaaggctgattattacacatctgttgccactgtaatg
tacctacggaaggaaaactgcttatatcaagcctgtcccactcaagattgcaacaagaaa
gtagtcgaccagcagaatggcttctaccgctgtgaaaagtgtgacaaagagttccccaat
tttaagtaccgtctaattctttctgccaacattgctgattttggtgataatcagtgggtc
acttgtttccaagaagctgcagaggccattttgggacagaatgctgcctacttgggagaa
ttgagggactctaatgagcaagcctttgaggaagtcttccaaaatgcaaacttcagaaca
tatattttccggaacagagtgaaactggaaacctataatgatgagtctcgaattaaagca
acagtcttggatgtgaaaccaattgaccataaagaatacagcaaacggctgattatgaac
atccgaaagttagcagtgtag
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