Polypterus senegalus (gray bichir): 120531740
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Entry
120531740 CDS
T08668
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120531740 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psex03041
]
120531740 (prpf40a)
Spliceosome [BR:
psex03041
]
Complex A
U1 snRNP components
U1 related factors
120531740 (prpf40a)
Complex B
120531740 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DTW
WW_2
Motif
Other DBs
NCBI-GeneID:
120531740
NCBI-ProteinID:
XP_039613361
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Position
6:complement(157732885..157790644)
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AA seq
889 aa
AA seq
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MVCKERVTEYSADMMGPPGMPPHFPPMGMPPMGQRPPNMTPMPPGIIPPMMPPMGGPPMG
QMPGIMPPMIPGMMLPPRIPAAPLQPTGPPGVNGSDAAVASAVPAPLAANPAVSVLQQGA
ASSSSPQDDQQKKKSVWTEHKSPDGRTYYYNTESKQSTWEKPDELKSPFEQMLSKCPWKE
YKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTTDVATPATVPPASVPVSETN
SLPAEAETVAPTVSEEPPVQAPVVAVEEPPETTVNSVEEVPVQEVPVNDIPKKEEKPEVV
KKVYKWNTKEEAKQAFKELLKEKGVSSNSTWEQAMKLIINDPRYSALPKLSEKKQAFNAY
KVQTEKEEKEEARIKYKEAKETYQRFLENHEKMTSTTRYKKAEQMFGELEVWTAVPERDR
LEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLLDNPTFA
EDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSMLRERRRHRKNREAFQKFLDELHDH
GQLHSMSAWMEMYPTVSSDIRFSNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILK
DKGFTVEVNTTFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMK
RKEAAFKSMLKQATPPLEHDSTWEDVRDRFLKEPAFEDITLESERKRIFKDFIHILEHEC
QHHHSKNKKHSKKSKKHHRKRSHSHSASESEEDDYQSKKKKRSPSRSPSEHSSSGESERS
YKKSKKHKKKAKKRRHKSASPESEGERDRKGRDRDRDRDRDRDRDKDKEREKEKENEKSR
SRPQAESKQKSPKRKSAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggtctgtaaagaaagggtcacggagtattccgcagacatgatgggaccaccggggatg
ccacctcacttccctccgatgggcatgccaccaatgggacagagacctccaaatatgaca
cccatgccaccagggattataccaccaatgatgccccctatgggtgggccaccaatggga
cagatgccgggcataatgcctccaatgattccaggaatgatgttgcccccacgcatccca
gctgctccattacaacctacagggccaccaggtgttaacggttcagatgctgctgtagct
tcagctgtacctgcacctctggctgcaaatccagcagtatccgttcttcagcaaggtgct
gcatctagtagctcacctcaagatgatcagcaaaagaagaagtctgtatggactgagcac
aagtctccagatggaagaacatattactataatacagaaagtaaacagtcaacatgggaa
aagccagatgaacttaagtccccctttgagcaaatgctctccaaatgcccatggaaagaa
tacaagtcagataccgggaaaccttattattataactctcaaacaaaggaatctcgctgg
acaaagcctaaagagttagaggatctagaagcaatgattaaggctgaagaaaatggaacg
actgatgttgcaacacctgctactgtgcctcctgcttcagtaccagtctctgaaacaaat
tctcttccagccgaggctgaaacagtagctccaactgtttctgaggaaccacccgttcag
gctcctgttgtagctgtagaggaaccaccagaaaccactgttaattcagtagaagaagtt
cctgtacaagaagtcccagttaatgatatacccaaaaaagaagagaagcctgaagtagtg
aaaaaagtatacaaatggaacacaaaagaagaagccaaacaagcttttaaagaacttcta
aaagaaaagggtgtctcttcaaattctacttgggaacaagctatgaagctaatcataaat
gatcctagatacagtgcattgcctaaactgagtgagaagaagcaagcgtttaatgcttat
aaagtacaaactgagaaagaagaaaaggaagaagctagaattaaatacaaagaagccaag
gaaacttatcagagatttctggaaaatcatgagaaaatgacatcaacgaccagatacaaa
aaagcagaacaaatgtttggagaactagaagtatggacagctgttccagaaagagaccga
ttagaaatctatgaagatgttttgttttacttagcaaaaaaggaaaaggaacaagcgaaa
cagttaaggaaaaggaattgggaagctctaaagaacatcttagataatatggcaaatgtt
acatatagcacaacatggtccgaggcacagcagtatcttttggataaccctacatttgcc
gaggatgaagaattacagaatatggataaagaggatgcacttatttgctttgaagagcat
atacgggcattagaaaaagaagaggaagaagagaaacagaaatctatgctaagagaaaga
agacggcacagaaaaaacagggaagcctttcagaaatttttggatgagttacatgatcat
ggccagctacattcaatgtctgcttggatggagatgtatccaactgttagctcagacata
cgattttccaatatgctaggtcagccaggttcaacaccactagatcttttcaagttttat
gtggaggatctgaaagcaaggtatcatgatgaaaaaagaataataaaagatatacttaag
gataaaggatttacggtggaagtaaataccacttttgaagattttggaacagttatcagc
tcagacaaaagagctacaacattagatgctggcaacatcaaactagcatttaacagttta
ctagagaaagcagaagcacgagaaagagagcgagagaaagaagaagccagaaaaatgaag
cggaaagaagctgcatttaagagcatgctgaaacaagccacacccccccttgagcatgac
tccacatgggaagatgttcgtgataggtttttaaaagaacccgcatttgaagacattaca
ttagaatcagaaagaaaaagaatattcaaggactttattcacattttagagcatgaatgt
caacaccaccattcaaagaacaagaaacactccaaaaaatccaaaaagcatcacagaaag
agatctcactcacattcggcttctgagtctgaggaggatgactatcaatcaaagaaaaaa
aaaagatcgccatctagatcaccatcagagcactcatctagtggagaatctgaaagaagt
tataaaaaatcaaagaaacacaagaagaaggccaaaaagaggagacacaagtctgcatct
ccagaatcagaaggtgaaagggacagaaaaggtcgagatcgagatcgagaccgagatcgc
gatagggatcgtgacaaagacaaggaacgggagaaggaaaaagaaaatgaaaaatctagg
agcagacctcaagcagaatcaaaacagaaatctccaaaaagaaaatctgcaaaagaagaa
ggtggttgggacacatcaggcagtgagttgagtgaaggcgaactagaaaaaagaagaaga
actctgttggagcaactcgatgctccctaa
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