KEGG   Polypterus senegalus (gray bichir): 120531907
Entry
120531907         CDS       T08668                                 
Symbol
itga4
Name
(RefSeq) integrin alpha-4
  KO
K06483  integrin alpha 4
Organism
psex  Polypterus senegalus (gray bichir)
Pathway
psex04510  Focal adhesion
psex04512  ECM-receptor interaction
psex04514  Cell adhesion molecules
psex04672  Intestinal immune network for IgA production
psex04810  Regulation of actin cytoskeleton
psex04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:psex00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120531907 (itga4)
   04514 Cell adhesion molecules
    120531907 (itga4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120531907 (itga4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120531907 (itga4)
   04810 Regulation of actin cytoskeleton
    120531907 (itga4)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    120531907 (itga4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:psex04147]
    120531907 (itga4)
   04515 Cell adhesion molecules [BR:psex04515]
    120531907 (itga4)
   04090 CD molecules [BR:psex04090]
    120531907 (itga4)
Exosome [BR:psex04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   120531907 (itga4)
  Exosomal proteins of other cancer cells
   120531907 (itga4)
Cell adhesion molecules [BR:psex04515]
 Integrins
  Integrin alpha subunits
   120531907 (itga4)
CD molecules [BR:psex04090]
 Proteins
  120531907 (itga4)
SSDB
Motif
Pfam: Integrin_A_Ig_1 FG-GAP Integrin_A_Ig_2 Integrin_A_Ig_3 FG-GAP_3 DUF11 Integrin_alpha
Other DBs
NCBI-GeneID: 120531907
NCBI-ProteinID: XP_039613686
LinkDB
Position
6:complement(189483337..189674633)
AA seq 1025 aa
MELRKFGEVWGCGGIWRLACLCCLLRYSRCYNVDVKHSVNFHGPHGSLFGYSLLLHRHDT
GKWVLVGAPLANSTFNASIMNPGAIYKCSLTDISGSCEQLPFGSGREPTCGKTCQAERDN
QWLGVSLSGRLTEDGHILACGHRWKNIFYTQRENHKLPHGVCYRLRSDLTQMGGPLIPCY
KDYHRKFGENYGSCQAGMSSFLFEDLMVIGAPGSNYWTGSVMVYKTSNNSLKAYNDYDNM
VTYGSYLGYSVSAGHFMSPTSTEVVGGAPQYGQTGKVYIFGVSASSQLRIITQLNGKLLG
SYYGASLCAADLNADGLTDLLVGAPMFSTVREEGRVYVYLNRGDAKMEELEFTLMGSNSY
SARFGETITDLGDIDNDGFTDLAVGAPQEDDLTGAVYIYNGRKKGISRSFSQRITGETLG
HPFKMFGQSVAGGVDVDDNGYPDMVVGAFLSDAAVVLRTRAIVIVDASVHLPATVNRTRP
ECMENRQPAVCINITVCFMVQAKGVPGHVGLLYNVTSDVLRKKDLPFRFYFLGNGTSNST
TGSIHVQHNRLTCVTHQAFMRKEVRDIFSPIHFEVSYQLGEHIVKSQNAKHFPPLMPILQ
QREGQDHRLMNQTMFARYCVWENCSANLQVYAEFALPQSTAGKRYFAIGSGKTVTLSMSL
FNAGDDAYQTTIHVSLPKSLHFIKVLESEEKHISCDFHQEEQLLNKLKCSVGHLYINSLS
QTNFALLLDVDKHVTPEDLHITVNATCECAENTNLLHDNLATAVLPLRYEVDLGAHGFVS
PSFFTFGPSKQVVDSCFTETFNYTFTMTNFGPSRASNTMLELSIPNSVAMQPFQLVNIVD
LKTSQGECLLPKQEQNCEVQDPFDSLTDVVFFFSKTNKRLLYCMHEDTTCLNVTCNLGSM
ESGAVATIHLILELNPIVLAIARNSIVQIMTTSRAFPEPDPYVVHVQRDHLAQVLVEAHH
DGIPKERVRIFLLLSGLVMGFLLLFMLIYTLWKVGFFKRSFKKQEEQQQLRRESWDYVTK
SKDVY
NT seq 3078 nt   +upstreamnt  +downstreamnt
atggagctcagaaagtttggcgaagtttggggatgcggtggcatctggaggctggcgtgc
ctctgctgtttgctgcgctactcccggtgttacaatgtggacgtgaaacactccgtgaac
tttcatggaccccacggatctctgtttgggtactcgctgctactgcatcgacacgacact
ggaaagtgggtcctggtgggagctcctctggccaactccaccttcaatgcctccattatg
aatcccggggccatttataagtgcagcctcacggacatctcagggtcctgcgagcagctc
ccatttggaagcggcagggagccaacgtgtgggaagacctgccaggcagagagagacaac
cagtggcttggcgtgagtctgtcggggcggctgacagaggacgggcacattctggcttgc
ggccatcgctggaagaacatcttctacactcagagagagaaccacaagctaccccacggc
gtctgctacagactgcggtccgatctgactcagatgggtgggcccttgattccgtgttac
aaagattaccatcggaaatttggagagaattacggctcctgccaggccggcatgtcaagc
tttctgtttgaggatctgatggtcatcggagcgccagggtcgaattactggacagggtcg
gttatggtgtataaaacatccaacaactccttgaaggcatacaacgattacgacaacatg
gtcacgtatggaagctacctgggttattctgtctccgccgggcactttatgagccctaca
agcactgaagttgttggtggtgcccctcagtatggccagactggtaaagtttacatcttc
ggtgtctctgccagcagtcagctgaggatcatcacccagttaaacggaaagctgcttgga
tcctattatggtgcttctctctgcgcagctgacctgaatgcagacggactgactgacctg
cttgttggcgcaccgatgttcagcaccgttagagaagaagggagagtctatgtatacttg
aaccgaggagatgctaaaatggaggagttggaattcaccctcatgggaagcaattcttat
tcagcgaggtttggggaaacgatcacagatctgggggatatcgataacgacggatttaca
gatcttgctgtcggcgcaccacaggaggacgatctgacaggcgctgtttacatctacaat
ggccggaagaaggggatctcacgctccttctctcaaagaattactggagagacccttgga
cacccttttaagatgtttggccagtctgtggcaggaggtgtggacgtggatgacaacggg
tatccagatatggtggtaggagccttcttgtctgatgctgcggtggttttgaggacccgg
gcgattgtcatcgtggatgcctcagtgcatctccctgccaccgtcaaccgcacccgacca
gagtgcatggagaacaggcaacctgccgtctgcatcaacatcactgtgtgcttcatggtc
caagccaagggcgtccctggtcatgttggtttgctgtataacgtgacgtccgacgtcctt
cggaagaaagacctcccgtttagattttactttttgggaaatgggaccagcaacagcacc
acaggaagcatccatgtccagcacaatcgtctgacatgtgtgacccaccaggcgttcatg
aggaaagaagtccgggacatcttcagccccattcattttgaagtgtcctaccagcttggt
gagcacattgtgaaaagccagaatgccaagcactttcctcctcttatgccaatcctccaa
cagcgagaggggcaggaccatcgtctcatgaatcagaccatgtttgctcgctactgtgtc
tgggaaaactgctctgccaacctgcaagtgtatgccgagtttgcactgccacagtccaca
gctggtaaaagatattttgcaatcggaagtggaaagacggtgacgctcagcatgtccctg
ttcaatgcgggagacgatgcctaccagacgaccattcacgtcagcctccccaaaagcctt
cacttcattaaagtcctggaatcggaggagaaacacatcagctgtgattttcatcaggag
gagcagcttttgaacaagctgaagtgttccgtcggccatttgtacatcaactcgctttcc
cagacaaacttcgctctccttctagatgtggataaacatgtcacccctgaggacctgcac
atcacagtcaatgctacctgtgaatgtgctgaaaacacaaacctcctccatgacaacctg
gccacggcggtgcttcctttgcgctacgaggtggacctgggagcccatggatttgtatct
ccttccttcttcacctttggaccatcaaagcaggtggtggacagctgtttcacagagaca
tttaattacacttttaccatgactaattttggccccagcagagcatcaaacaccatgctg
gagctttccattcccaactccgtggcaatgcagccattccagctggtgaacatcgtggac
ttgaagactagccaaggagagtgcctccttcccaaacaggagcagaactgtgaagtccag
gaccctttcgactccctcaccgatgttgtgttcttcttctctaagaccaacaaaaggctc
ctgtattgcatgcatgaggacaccacatgtttgaacgtcacctgcaacttgggatcgatg
gagagcggagcagtagccacgatacacctcatccttgagctcaacccaattgtgctagcc
atagctcggaattctattgtacaaatcatgacaacttccagagcgtttccagagccagac
ccttacgtggttcatgtccagagagatcaccttgcacaggttcttgtcgaagctcatcat
gacgggattccaaaggagagagtgaggatcttccttctgctgagcggtctggtcatgggc
ttcctactgctgttcatgctgatctacactctgtggaaggtcggattcttcaagagaagt
ttcaagaagcaggaggagcagcagcagcttcgacgggagagctgggactacgtgacaaaa
tcgaaagatgtctactga

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