Polypterus senegalus (gray bichir): 120532285
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Entry
120532285 CDS
T08668
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex02010
ABC transporters
psex04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120532285 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120532285 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
psex02000
]
120532285 (abca1a)
Transporters [BR:
psex02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120532285 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_22
Motif
Other DBs
NCBI-GeneID:
120532285
NCBI-ProteinID:
XP_039614094
LinkDB
All DBs
Position
7:4590122..4715993
Genome browser
AA seq
2263 aa
AA seq
DB search
MGKMLIFTQLGLLLWKNFTYRRRQTFQLLIEIAWPLFLFFILISVRLSYPPYEQHECHFP
NKALPSAGTLPWVQGIICNANNPCFRYPTPGESPGAVGNFDKSIISRLFSDAKKFLLYSQ
NDHSRAGFKNLVDALKSMRDSSLGFKLKDFLSENETLSTFLQHNASFPEEAVAEILNADV
NLANVFTRGFGVHLKDLCNSSKLEDFVTIADQQVARRSQDVICSSSNSWLSAAEELFLSN
LDFVRPIQAKVSPGSHLTQEVSEATNGLLKSLASLAIELTSMKSWSDMRKEILYLRENST
GSPSSMYQAISRIACGHPEGGGLKIKSLNWYEDNNYKALFGFNSTEEDTVFYDNSTTPYC
NEMMRNLESNPISRMIWRALKPLLIGKILYTPDNPATQKIIKEVNKTFQELGVFRDLGGM
WLEVKPKIWRFMESSQEMDIVRTLLQNNASATFFNEKLNGTGWTVKDIADFLSKNPEEAA
PGSLSWQKVFNETDHAVLTVSRFMECINLDKLEPVANEERLVNHSMKLLDERKFWAGIVF
PEMGSNSTELPPHVNYKIRMDIDTVERTNKIKDGYWDPGPRADPFEDMRYIWGGFAYLQD
VIEHGIIRALTGSAKKIGVYMQQMPYPCYVDDIFLRVMSRSLPLFMTLAWIYSVAIIIKG
IVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKKGNLLPYSDPSVV
FVFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYILCVAWQDYVGFSLKVI
ASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPMEQDSYNLTTSICIMFFDAFLYGVM
TWYIESVFPGQYGIPRPWYFPFTKSYWFGESGGNIPTTPLNKTGNTEVCMEEEPTHLELG
VYIKNLVKIYRDGKKVAVDGLTLGFYQGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAY
ILGKDIRSDLSSIRKNLGVCPQHNVLFDQLTVEEHIWFYARLKGLTEQEVKAEMEQIVND
VGLPHKRKAKSSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR
QKRTIILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDLEASI
SSCRNSSSTVSFLKKEDSVSQSSSDAGLGSDHESDTTTIDVSLISSLILKHVPKARLVED
FGHELTYILPYESAKDGAFVELFHEIDDRLSDLGISSYGIADTTLEEIFLKVAEDSGVDA
ETSDGTIPTRRKRRHAFGDRQSCLRPFTDDDIFDINDSDMDPEARETDMLSGMDGKGTYQ
VKGWSLMRQQFVALLWKRLLHAKRSRKGIFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LEPWMYEEQYTFISNDAPGDDNIESLLSALTSSPGFGTRCMEESPFQNDSCSAGNSTWRT
PDIPQNVKDLFLYGNWTMENPSPCCECSNENRKKMLPECPIGAGGLPPSQILQPTSDVLQ
NLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSSQILPAGEDVNIAIIQL
RKALGTVKNPAADRFLESLSRFMKGLDTKDNVKVWFNNKGWHAVGAFLNVMNNGILRANV
PKGKDPSTYGVTAFNHPLNLTKEQISQVALMTTSVDVVVSICVIFAMSFVPASFVVFLIQ
ERVSKSKHMQFISGVKPGLYWLANFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVL
ALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNS
INEILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDMVGRNLFAMAI
EGAVFFLITLLIQYRFFIKPRPVSTKLPPINDEDEDVAKERQRILGGGGQSDILEVRELT
KVYRMKRKPAVDRLCVGIPRGECFGLLGVNGAGKTTTFKMLTGDTDITAGEAFLNSKSVL
SQIHEVHQSMGYCPQFDAINELLTGREHLEFYAILRGVPEKEVCKIAEWGIRKLGLIKYM
DKNAANYSGGNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNTILSIIKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPNPNLTPVMEF
IESELPGSVMKEKHRNMLQYQLPSSLSSLATIFSILSKNKEQLRIEDYSVSQTTLDQVFV
NFAKDQSDEDHSKDISPHRKEAVLDISLLKSFLQDENVKESNV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggggaagatgttgatcttcactcagctgggactgctgctctggaagaacttcacctac
cgacggaggcagacgtttcagcttctgattgagattgcatggccgctcttcttgttcttc
atcctgatctcggtgcggctgtcctaccctccttatgaacaacatgaatgtcattttcca
aataaggctttgccatcagcggggacactgccatgggtacaaggaatcatctgtaatgcc
aacaatccctgctttcggtacccaacaccaggagagtcgccaggagcagttggaaacttc
gataagtccataatatctcggctgttttcagatgccaagaagttcctgttgtacagtcag
aatgaccacagccgtgcgggattcaagaatttagtggacgcgctgaagagcatgcgggac
tcgagtctcggtttcaaactgaaagacttcctctcagaaaatgaaaccctctccacgttt
cttcagcataacgcatcctttccagaagaggcggtggcagagattctcaatgcagatgtc
aatctggcaaatgtgttcacaagaggttttggggttcacctgaaggacctctgcaactct
tccaaacttgaagatttcgtcactattgccgaccagcaggtggcccgtcgatctcaggat
gtcatctgctcctcgtccaacagctggctgagtgcggccgaggagctctttctttcgaat
ttggacttcgtgagacccattcaggcaaaagtctccccagggtctcacttaacccaggaa
gtatctgaggcaacaaacggcctcctaaaaagtctggcatctcttgctattgagctgacc
agcatgaagagctggagtgatatgaggaaagaaatcctctacctgagagaaaacagcaca
ggctcaccgagcagcatgtaccaggccatctccaggatagcgtgtgggcaccccgagggg
gggggcttgaaaatcaagtcactcaactggtatgaggacaacaactacaaagctctgttt
ggattcaacagcacagaagaggacaccgtgttctatgacaattcaaccactccctactgt
aatgagatgatgagaaatttagaatcaaatcccatctctcgaatgatctggagggccttg
aagccgctgctcatcggcaaaattctgtacacgccagataacccagcgactcaaaagata
attaaggaggttaacaagacatttcaagagctgggtgtatttcgagaccttggtggcatg
tggctggaggtcaaacccaagatctggcgcttcatggagagcagccaagagatggatatt
gtccggacccttttgcaaaacaatgcaagtgccaccttcttcaatgagaagttgaatggg
accggctggactgtgaaggacattgcggacttcttatcaaagaaccctgaggaggcggca
cctgggagcctatcatggcagaaggtcttcaatgagacagaccacgctgttttgaccgta
tcccgttttatggagtgcatcaacctggacaagctggagcccgtcgccaatgaggagaga
ctggtgaaccactccatgaagctgctcgatgaaaggaaattctgggccggaatcgtcttt
ccagaaatgggatccaatagcacggagctgcccccccatgtaaattacaagatccggatg
gacatcgacaccgtggaaaggaccaacaaaatcaaggatggttactgggaccctggtcct
cgggcagatccatttgaggacatgcgttacatctggggaggatttgcttaccttcaggac
gtcattgaacatggcatcatccgagcactgacaggcagtgcaaagaagattggcgtgtat
atgcagcaaatgccatacccttgctatgtggacgacatcttcctgcgtgtgatgagccgg
tctctacccctcttcatgactctggcttggatttattcagtggccattattatcaaaggc
attgtgtatgagaaggaagcccgcctgaaggagaccatgagaattatgggcctcgacaac
ggcatcctgtggctcagctggttcatcagcagtctcatcccgctcctcatcagtgcagcc
cttttagttctcatcctgaagaaaggaaacctcctgccttatagcgaccccagtgttgtg
tttgttttcctcgcctcgtttgctgtggtcaccatcatgcagtgctttttgataagcacg
attttctcacgggcaaacttggcagcggcttgcggaggcatcatttacttcaccctctat
ctaccgtacatcctgtgtgtggcctggcaggattacgtcggcttttctcttaaagtcata
gcgagtttgctgtccccggtggcctttgggtttggctgcgagtattttgcgctgtttgaa
gagcagggtgtggggattcagtggaacaatctcttctcaagcccgatggagcaagacagc
tacaacctgaccacctccatctgcatcatgtttttcgacgctttcctctatggtgtaatg
acctggtatattgagtctgtcttccccggacaatatggaatcccacggccttggtatttt
ccatttacaaagtcttactggtttggtgaatcaggaggaaacattccaactactccactg
aacaagactggaaatacagaagtttgcatggaagaggagccgactcatcttgaactgggc
gtctacatcaagaatctggtgaagatttaccgggatgggaagaaggttgcagtggacggc
ctgacgttaggtttttaccagggacagatcacgtcattccttgggcacaacggagcaggg
aagaccactacaatgtcaatcttaactggactcttcccacccacgtctggcacggcttac
attcttggaaaggacatccgctccgatctcagctccatccggaagaacctcggagtgtgt
cctcagcacaacgtcctttttgatcagttgaccgttgaggagcacatctggttctacgcg
cggctgaagggcctgactgagcaggaggtcaaggccgaaatggagcagattgtgaacgac
gtcggcctccctcacaagcgcaaagccaaatccagccagctctccggtggtatgcagcgc
aagttgtcggtggccttggcctttgtgggcggctccaaagtggtcatcttggacgagccg
acggctggagtggacccttattcacgccggggcatatgggagttactgctgaaataccgc
cagaaacgcaccatcatcctctcgacgcaccatatggatgaagctgacgttctcggagac
aggatcgccatcatttcccatggcaaactgtgctgcgtgggttcctccttattcctgaag
aatcagctaggaacgggttactacctgaccctggtcaagaaagacctggaggcgtccatc
agctcgtgccggaacagcagcagcaccgtgtcattcctcaagaaggaggacagcgtttcc
cagagcagctctgacgctggacttggcagcgaccatgaaagcgacacgacgacaatagac
gtttctctcatctccagcctcatcctgaaacacgtgccaaaggctcgtttggttgaagat
tttggccacgagctgacgtatattctgccctatgagtctgccaaggacggggcttttgtc
gagctcttccatgaaatcgatgacaggctgtcggacttgggcatctccagttacggcatc
gcggacaccactttggaggagattttcctcaaagttgctgaggacagcggagttgatgcc
gagacttcagatggcaccatccccacccggaggaagcggagacatgcatttggggacaga
cagagctgcttgaggccgtttacagatgatgacatatttgatattaatgactccgatatg
gacccagaggcgagagaaactgacatgctgagtggaatggacggcaaaggcacctaccaa
gtgaaaggctggagcctcatgagacagcagttcgtggctctcctctggaagcggctgctc
catgccaagcgctccagaaaggggatctttgcccagattgtcctgccagccgtctttgtg
tgcatcgccctggtgtttagcctgattgtcccaccatttggaaaatatcccagtttggaa
ttggagccatggatgtatgaagagcagtacacgtttatcagtaatgatgcgcctggagat
gacaacatagagagtctgctgagtgctctaacaagcagtccgggctttggtacgaggtgc
atggaggaaagtccgtttcaaaacgattcatgcagtgctggaaattccacctggagaacc
ccagacattccacagaatgttaaggacctcttcctctatggaaactggacgatggaaaat
ccctccccttgctgcgaatgcagcaatgaaaacagaaagaaaatgcttcccgagtgccca
attggagctggtgggctgccaccttcacagattcttcagcccacatcagatgtccttcag
aatttgactggtaggaacatctcggattatcttgtgaagacgtatgcccagattattggg
aaaagtttgaagaacaagatttgggtgaatgaattcaggtacggcggcttctccttgggg
gcacgaagctcacaaatcctccctgccggcgaggacgttaacatcgccattatccagctt
cgaaaggctcttggcaccgtcaagaacccggcagccgacagatttttggaaagcttgtcg
cggtttatgaaaggcttggacacgaaggataacgtcaaggtctggtttaacaataaaggg
tggcatgcagtcggagcttttctgaatgtcatgaacaatggcattcttcgcgccaacgtg
cctaaaggaaaagaccccagcacatacggagtcaccgccttcaatcaccccctgaacctc
accaaggagcagatctcgcaagtagcactaatgacgacatcggtggatgtcgtggtttcc
atttgcgtcattttcgccatgtccttcgtcccggccagctttgttgtgttcctcattcaa
gaaagggtcagcaagtccaagcacatgcagttcatcagcggagtcaagccgggcctctac
tggctcgccaacttcgtctgggatatgtgcaattatgtggtccctgcaaccctcgtcatc
atcattttcatctgcttccaacaaaagtcctacgtctcctcaacgaacctcccagttctg
gctttgctgctgctgctctacgggtggtccattacccccctgatgtaccctgcatcgttc
ctctttaaaattcccagtacggcttacgtggtgctcaccagtgtgaaccttttcattgga
attaacggcagtgtggcaacttttgtccttgaactcttcaccaataacaaactgaatagc
attaatgagatcctcaagtcggtgtttctcatctttccccatttctgcttgggccgtgga
ctcatcgacatggtgaaaaaccaagccatggcagatgccttggaaagatttggggagaat
cgcttcgtctctccgctgtcttgggacatggtgggcagaaacctgtttgccatggccata
gagggggctgtcttcttccttatcacgctgctgatccagtacagattcttcatcaagcca
agacctgtgtccaccaaacttccgcccatcaatgatgaagacgaagacgtggccaaagag
cggcagagaatattaggcggtggaggccagagtgacattctcgaagttagagagctgaca
aaggtgtacagaatgaagcgcaagcccgcagtggatagactttgcgttggaattccacga
ggagagtgctttggacttcttggtgtcaacggtgctgggaagacgaccactttcaaaatg
ctgaccggagacacggacatcacagcgggagaggccttcttaaacagcaagagtgtcctc
tcacagattcatgaagtccaccaaagcatggggtactgtccgcagtttgatgcgatcaac
gagcttcttactgggagggagcacctggagttttatgccatactgcgtggtgttcccgaa
aaagaagtttgtaagattgctgagtggggaatccgcaagcttgggctcataaagtacatg
gacaagaacgctgccaattacagtggagggaacaggcgcaagctgtctaccgccatcgct
ctgattggaggaccacccgttgtgtttttggatgaaccaacgaccggaatggatccgaaa
gctcgcagggccttgtggaacaccatcctcagcatcatcaaagaaggccgctccgtggtg
ctcacctcgcacagtatggaagaatgtgaagcactctgcacccggatggcaatcatggtg
aacggcaggtttagatgcctgggcagcgtgcagcacctgaagaacaggttcggcgatgga
tacaccatcatcctgcgagtggcgggtccaaaccctaatctgacaccagtgatggagttc
atagagagtgagcttcccggcagcgtgatgaaggagaaacaccggaacatgctgcagtat
cagctgccgtcctccctctcgtctctggccaccatatttagcatcctgtccaaaaacaag
gagcagctcaggatagaagactactccgtgtcacagaccactctggaccaagtatttgta
aattttgcaaaggaccaaagtgatgaagaccactcaaaagacatttcaccgcacagaaag
gaagctgtgttagatatttcacttcttaaatctttcttacaagatgagaatgtaaaagag
agtaacgtgtga
DBGET
integrated database retrieval system
