Polypterus senegalus (gray bichir): 120532353
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Entry
120532353 CDS
T08668
Symbol
frem1a
Name
(RefSeq) FRAS1-related extracellular matrix protein 1a isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120532353 (frem1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
psex04091
]
120532353 (frem1a)
Lectins [BR:
psex04091
]
C-Type lectins
Lecticans
120532353 (frem1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Cadherin_4
Lectin_C
Big_9
Calx-beta
Motif
Other DBs
NCBI-GeneID:
120532353
NCBI-ProteinID:
XP_039614194
LinkDB
All DBs
Position
7:17286816..17552259
Genome browser
AA seq
2174 aa
AA seq
DB search
MLTLLICLWCVMDGVDGTFITVNRGLKVTKGQSAFLMTDDLQFDIPKEKDACKVEVITNE
PITQRVGKLTPLVFDCHFLPDEVKYTHYGCPILDEDRVMFRLYRFTTTETFTEVFTLHVK
LMEPDCNMIKLGPQVLEVPEFHGLSQVIDSNVLSFDYEHTPNLECTVRVATQESLLPAHG
QLVIGEPERTEPRGDVPHSFGPARQRIMTSAMLTCKDGSCSKGMKLVETTKVNCRDFLLM
GLRYQHLSPPSPAVDYIAIRLDLTDTRSRTTHKSEHAWIPVHIKNAIPNQPPKASFMSMF
ILEVDQFILTSLSTATLDAEDSETPKDLLVFNITRPPQQGYITHLTDHTKPITSFTWKDL
NEILIAYQPPNGSHTERRNFEMECEVYDFFFVQSSPFVVHISVRTADTNAPRVSWNMGLD
LLEGQTRPITWEQLQIVDNDNIKNVQIITVDGLQHGRLTVRGGKGFMFTVNDIKANEVRY
HHDDSDTTKDFIVFRISDGRHSIRHKFPINILPKDDSPPFLITNMVLELCEGQSLLIQLS
MLQASDMDSCDDYILFNITQPPTAGEIRKKPGPLLTGYPVQRFLQRDLFNAIIYYHHLGN
EVFEDSFEFVLSDSHDPPNLSEPQVVMVHITPVDDQLPKESPGTSRHLVVKETEVVHITK
KQLHFTDPESPDRELTYTITTLPYFTSLSGRPDAGKLFLLDSTSKFTKDATVPMLRSFTQ
HAVNFMKVAYMPPIQDIGPEAQHIQFIFSVSNQHGATVIGICFNITVLPEDNQAPQVFTN
ELTVQEGGACQVTEKHLIVVDQDTKEERIWIQLVRKPQHGHLEMNAFPIQEGGMFSLQDL
KSHKIRYHHDSSETSHDKILFFATDGIQSTDFVLHFKVLPVNDEAPVVKEGLRSTLHCGE
GHEVIITTEYLYATDSDSDDGHLIYMIARQPYYGVIRKNGVIVDQFIQADIVSRIITYQH
TGGEVGLKPRIDTITFVISDGNAASQPGCCPSDFQAPAVPTHDNLPVYDLNVTVFPVDNQ
PPTIVIGEMFVVDEGSSASITLSHLNAHDPDTSPDHLEFILASPPQFGYIENTLPSPGFE
KSNMGISIGSFALNHVKQNHINYVQSRHERIEPTTDQFLLYVTDGKRRSRETPFYVIINP
ANDEVPDFLARNITVQEGQMKELDASIINVVDLDIPRDQLVFTITKQPQHGMIMNGIYGN
DIARYRRLAHNHLNNKLPVYDFTIDSLRHGMKVMYLHDDSENMADGFAVQLSDGKHKVHR
YVSVKILPVNDEKPQVIRNSGIHVEMGESRIISSAVLEAEDKDTPQDLLIYTFDRVPKQG
VLQLKGDSGWTPLADGMTCAQEDIDMNLLRYVHTGALSSDVHDSFVFHVKDGGHQSPPQT
FSIIIKDMKKGDIAVFAKPLRVSKGERAILTTSVLMAEDSTDKPEELLFVITSPPTSGHL
EYVNHPGVPITSFSQMDIAASMVCYVHSSAASLPKDMFRFIVSNGVSTRNRTLEITVEMS
DRHLPTVSQNAGLQVPEGSMMVIPTEALQISDPDTPAQNLTFLLAQRPQFGQLFRRGSPL
QQRHFTQFDVDSLHMAYKHGGGGAQIDRFSFVASDGTNSGFIVDGKMQTEPIFFMIQVEP
LDKSAPRIIHHQCLTKVDLLQDGRYAIYISSYELKATDADTKDEDIYFNIVRAPHFSYLE
NVTTGELIQRRFTQKDLNRRTIRYIIKPFLGAVSDSVEFQVSDATGNACVLQTLEMKWSQ
VEFSQSEVNVCEGTGSVSLVITRKGFMMESSYVGVQVNERSASLGTDFSLSTSSLIQFDP
GVASRTLSINIVNDGLEEGEELFEVLLNSPVNTVLGERVKTTVKIHDTTGGHCHTTKNRH
SAPEIGQAIPVAVDYRPPHHGSIRLEKLPIVPVDSVGLTRGDVPQEPKPLSQTKLRVVGN
GKTVRPSSVHRNGTDLVFTYHGLMSLRVEDESSPPTSDKKARVLVTSKGQQRHRNVPPGV
TELFHADRGAVRIPGQTGSKRSFPKLCTPDLRGLIHYDKDAQVLFRCDGISWKPWQPSTD
DLTAKKCPAGWSYHTPYCYYMSTDQKVSWNSAARTCKEKHHGSLVSILSKSDMDWLWDFS
GRTSFWIGLNDRVNAGQWEWVGGEPVSYTNWRKEPSRARKKGGTNCVQVQKRGKWQVKDC
KKGKHQHFVCHVKP
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgttgttgatatgcctttggtgtgtaatggacggtgtggatggcacttttatt
acagtcaacaggggcctgaaggtgacaaaaggccaatctgcttttttgatgacggacgat
ctacaatttgatatccccaaagagaaagatgcctgcaaagtggaggtcatcaccaatgag
cccatcactcaacgtgtggggaagctcacgccattggtatttgactgccattttctacct
gatgaagtgaaatatacacactatggctgcccaattctggatgaagatcgtgtcatgttt
cgactttacaggttcaccacaactgaaacttttacagaagtcttcactcttcatgtgaag
ttgatggaaccggactgtaacatgattaagctgggaccacaggtgctcgaggtgccggaa
tttcatggcctgtctcaagtaattgatagtaacgtgttgtccttcgactatgagcataca
ccgaatctggagtgtaccgtaagagtggccactcaggagtcactgcttcctgcacatgga
cagttggttattggagaaccagaaagaacagagccaagaggggatgtgccacacagcttt
ggaccagcacgacaaagaataatgaccagtgccatgttaacctgcaaagacggcagctgc
tccaagggtatgaagttggtagagacaacaaaagttaactgtcgagatttcctgctcatg
ggtttgaggtaccagcatctgagccctccttctcctgcagttgactacatagccatcagg
ctcgacctcaccgacaccagaagcaggacgacgcacaagtcagaacacgcctggattcca
gtccatattaaaaacgccatcccaaatcaacctccaaaagcttctttcatgtcaatgttc
atccttgaagtggatcagtttattctaacctctctaagcacagccactcttgatgcggaa
gacagtgaaacgcccaaggatctgctggtcttcaacattacacgacctccccagcaaggg
tatattactcacctcacggaccacaccaagccaattacttctttcacttggaaagacctc
aatgagattttgatagcctatcaacctccaaatggcagccacacagagagaaggaacttt
gagatggagtgtgaggtgtacgattttttctttgtgcaaagttctccctttgtcgtgcac
atttcagtcaggaccgctgacacaaatgctccaagggtttcttggaatatgggcttggac
ttactggaaggacagactcgacccataacctgggagcagctgcagattgtggacaatgat
aacattaagaacgtgcagatcatcacagtcgacggtcttcagcatggaagactcactgta
agaggtggcaaaggcttcatgttcaccgtcaatgacatcaaggctaatgaagtgaggtac
catcatgatgacagtgacacaacaaaagacttcatcgtcttcagaatctccgatggtcgc
cacagtatccgacacaaattccctatcaacatcctaccgaaagatgacagtccacctttc
ctcatcacaaacatggtgctggaactttgtgagggtcaatcactcctcattcagctgtca
atgcttcaggcctctgacatggactcctgtgatgactacatcttgtttaatatcactcag
ccaccaacggcgggagagattcggaaaaaacccggaccacttctcacaggttaccccgtc
cagcgctttcttcagagagacctgttcaatgccattatttattaccatcatctgggaaat
gaagtgtttgaagattcctttgagtttgtgctctctgacagccatgacccacccaatcta
tcagagccacaggttgttatggtccacatcacaccggtggatgatcagttgcctaaagaa
tctcccgggacaagccgacatctggttgtcaaggaaacggaagttgtccacatcaccaag
aagcagctgcacttcacggaccccgagtcgcccgacagggagctcacctacaccatcacc
acactgccgtacttcacgtcactgtccgggagacctgatgcaggaaagttgttcttactc
gacagcacctccaaattcactaaagatgcaactgttccaatgctaagatcattcacccag
catgctgtgaacttcatgaaggtagcttacatgccacccatccaagatatcggtcctgaa
gctcaacatatccagtttatcttctccgtttcaaaccagcatggagccacagtgattggc
atctgcttcaatatcaccgtcctccctgaagacaatcaggcacctcaggtattcacaaat
gagctcaccgtacaggaaggaggcgcatgccaagtaacggagaaacacctaatagtggtc
gaccaggacacaaaggaggagaggatttggatccagctggtgaggaaacctcaacatggc
cacttagagatgaatgcattccccattcaagaaggtggaatgttcagtttgcaagatctc
aaaagccacaaaattaggtatcatcacgacagctcagagacatcacacgacaagattctt
ttctttgctacagatggtatccagtctacagattttgttcttcactttaaggtgctgcct
gtgaatgacgaagctcccgttgtaaaggaaggcctgcgatcaactttacactgtggagaa
ggccacgaagtgatcatcaccactgaatatctctatgccaccgacagcgacagtgacgac
ggacatctgatttacatgattgcacgccagccatattatggagtgatacgcaaaaatggc
gtcatcgtggaccagtttatccaggcagacattgtttcacggattattacctatcagcac
acaggaggggaggtcggactgaagccacggatcgacaccatcacctttgtcatctcggat
ggaaatgctgccagtcagccaggctgctgcccgagcgattttcaagctccagcagtgccc
actcatgacaacctcccagtttatgatcttaatgtgacagttttccctgttgacaatcag
cctcctacaattgtcattggggagatgtttgttgtggatgaaggatcatcagcttctatt
accctcagccatctgaatgcccatgatccagacacgagccctgatcatctggagttcatt
ttggcttctccaccccagtttggttacattgaaaacacactgccaagccccggctttgaa
aagagcaatatggggattagcataggctcttttgctctgaatcacgtgaagcagaaccat
atcaactacgtccagtcgcggcatgagagaatcgagccaaccactgaccagtttctgctt
tatgtaaccgatggcaagcgtcgctccagagaaactcctttttacgtcatcataaaccct
gctaatgatgaagtcccagattttcttgcccgcaacatcactgttcaagaaggccaaatg
aaagagttagatgcatccataatcaatgtggtggacctggatattcccagagatcagctg
gtcttcaccattacgaagcagccacaacatggcatgataatgaatggcatttatggcaac
gacattgcccgctatcgacgacttgctcacaatcatctgaacaacaagcttcccgtctat
gacttcaccattgacagcctgaggcacggaatgaaagtcatgtacttgcacgatgactct
gagaacatggccgatggcttcgcagtacaactctctgatggcaagcacaaggttcaccga
tacgtttctgtgaagatcctgccggtcaatgatgagaaacctcaagtgataagaaactct
gggattcacgtggaaatgggtgaatctcggattatttccagtgctgtgctcgaagcagaa
gacaaagacacccctcaagaccttctcatttacactttcgacagagtgcccaagcaaggc
gtccttcagctaaaaggtgactcagggtggaccccgctggctgatggaatgacttgcgct
caagaagacattgatatgaacctgttacgttacgtgcatactggtgccctgagctcagat
gtgcatgattcatttgtctttcatgtgaaagatggtggacaccagtctcctcctcaaaca
ttctccatcatcatcaaggatatgaagaaaggagacattgctgtgtttgctaagcccctt
cgagtctctaaaggagagagagccatactaacaaccagcgttctgatggcagaggacagc
acggacaaacctgaagagctcctttttgttatcacctcccctcctacgtcaggccacctg
gagtatgttaaccatccaggagtgccaatcaccagcttcagccagatggatatcgcagct
tcaatggtttgctacgttcacagcagtgctgccagtctgccgaaggacatgtttcgattc
attgtcagcaatggcgtgtccacccggaataggactctggagatcacggtggaaatgagc
gaccgccacctgcccaccgtttcccagaatgctggtcttcaggtgcccgagggctcaatg
atggttattccaacagaggccttgcagatctctgatcctgataccccggcacaaaatctg
accttcctcctagctcaaaggccacaattcgggcagctgttccgaaggggctctccactg
cagcagcggcacttcactcagtttgatgtggacagcttgcacatggcctacaaacacggt
ggaggtggtgcacagattgaccgcttcagttttgtagcctctgatggcacaaattcagga
ttcattgtggatggaaagatgcaaacagagccaatatttttcatgattcaggtggaaccg
ctagacaaatctgcccccagaatcattcaccatcagtgtctgacaaaagtggatcttctt
caagatggccgttatgcaatctacatttcctcctatgagctgaaggccacagatgctgac
accaaggatgaagacatttactttaatattgtacgagcgccacattttagttatttggaa
aatgttaccacaggtgaactaattcaacggagattcacccagaaggatctgaaccggcgt
accattcggtacatcattaagccctttctgggagccgtctcagacagtgtggagtttcag
gtctcagacgcaacaggaaatgcatgcgttcttcaaacattggaaatgaagtggtctcag
gtggagttttcccagtcagaagtcaatgtgtgtgaaggtacaggatcagtgtcattagtg
atcaccaggaaaggattcatgatggagtcctcgtatgttggagtccaggtcaatgaacgt
tctgcttcattagggacggatttctcccttagcacatccagcctaattcagtttgatcca
ggggtagcgagcagaactttgagcatcaacattgtgaatgatggcctggaagaaggtgag
gaattgtttgaggtgcttctgaactctcctgtgaataccgtactcggagagcgtgtgaaa
accacagtgaaaattcatgacaccactggaggtcactgccacaccactaaaaacagacac
tcagctccagaaataggacaagccattccagttgctgttgattatcgacctccccatcat
ggctcaatccgacttgagaaacttcccatcgtgcctgttgacagtgttggtctgacaaga
ggggatgtgccacaggaacccaagcctttgtctcagactaaactcagagttgttggaaat
ggaaaaactgtacgtccatcatcggttcatcgaaacgggacagatttagtgtttacgtat
catggccttatgtctttgagagtggaggatgagtcgagcccacccacctctgataaaaaa
gccagagtactggttaccagtaaaggacagcagcgacatcgtaatgtccctcctggagtc
acagagctgtttcatgctgaccgaggtgcagtacgtatacctggacagactggctctaag
agatcttttccaaagctttgcacccctgatctgagaggactgattcattatgataaagat
gctcaagttctcttccgctgtgatggaatttcttggaaaccatggcaacctagcactgat
gatcttactgccaagaaatgcccagctggttggagctatcacaccccctactgttattac
atgagcactgatcagaaagtgtcctggaattctgcagccagaacctgcaaggagaaacat
catggcagcctggtgagcatcctttcgaagtctgacatggactggttgtgggactttagt
ggaagaacatcattttggattggcctaaatgaccgagtaaatgctgggcagtgggaatgg
gttggtggagagccggtgtcctacacaaactggaggaaggaaccttctcgagcgaggaag
aagggcggcacaaactgtgtgcaggttcagaaacgagggaagtggcaggtgaaagactgc
aagaagggcaaacaccagcattttgtgtgtcatgtgaaaccttga
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integrated database retrieval system
