Polypterus senegalus (gray bichir): 120532589
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Entry
120532589 CDS
T08668
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03420
Nucleotide excision repair
psex04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120532589 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
120532589 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120532589 (ercc8)
03400 DNA repair and recombination proteins [BR:
psex03400
]
120532589 (ercc8)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
120532589 (ercc8)
DNA repair and recombination proteins [BR:
psex03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
120532589 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
WDR90_beta-prop_4th
WD_LRWD1
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_LRRK2
Beta-prop_IFT140_2nd
Beta-prop_Nup120_160
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120532589
NCBI-ProteinID:
XP_039614651
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All DBs
Position
7:60759295..60803872
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AA seq
399 aa
AA seq
DB search
MLGFLFARQTGLEDPLHLKRAESTRRVLTLELNKDRIVDRIHGNGVNTLDIEAVEGKYML
SGGADGVIVIYDLENSSQKPQYTCKSICTVGRSHRDVHKFSVETVQWYPHDTGMFTSSSF
DKTLKIWDTETLIPAEIFSFEGTVYCHHMSPIATKHSLIAVGTKDHKVQLCDLKSGSRSH
ILQGHRGEILSVKWSPRYEHILATASTDSKVRLWDVRRATGSLFTLDQHNGVKSKAASEA
ADSAHNGRVNGLCFTGDGLHLLTIGTDNRMRLWNSANGENTLVNYGKVYNESRKGLKFTV
SKGCSPEFVFVPSGSEIAVYALFTGKLITMLRGHYSYVDCCEFHPDYQDLYSGGKDCNIL
AWIPAPRSPALDDADDQTKSGGSLNPAFEDAWSSSDDEG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgttgggatttcttttcgcccgccaaacaggtttagaagatccccttcacttgaagcga
gcagagtccacacgaagggtgcttaccttggagttaaacaaagacagaattgtcgaccgt
attcatgggaatggagtgaatacacttgatatagaagctgttgaaggaaaatatatgtta
tcaggaggggcagatggagtcattgtaatctatgacctggaaaactcttcacaaaaacct
cagtatacatgcaaatcaatttgtacagtgggcagatctcatcgggatgttcacaaattt
agtgtggagactgtccaatggtatcctcatgatacaggaatgtttacatcaagttctttt
gacaagactctgaaaatctgggatacagagactttaattccagcagaaattttcagtttt
gaaggaacagtatattgccatcacatgtctcccattgcaactaagcacagtttaatagca
gttggtaccaaagaccataaagtacagctttgtgatttgaaatctggttcccgttcccac
attcttcaggggcatcggggagagattttatcagtgaaatggtcacctagatatgagcac
atacttgcaacagcaagtactgacagcaaagtacggctgtgggatgtgagaagggcaaca
ggaagtttattcacacttgaccagcacaatggagtgaaatccaaagctgcttctgaggca
gctgattctgctcataatggccgtgtgaatggattatgctttactggtgatggactacat
cttctaaccattggcacagataatcgcatgagactttggaatagtgcaaatggggaaaac
acactggtgaactatgggaaggtgtataatgaaagccgtaaaggattaaaatttactgtg
tccaaaggttgcagtccagaatttgtatttgtaccttctggcagtgaaatcgcagtatat
gccctttttacgggaaaactgattaccatgctgagaggccattacagttatgttgactgt
tgtgaattccatccagactaccaggatttgtacagtggagggaaagattgcaacatcctt
gcctggattcctgctccacgtagtccagctcttgatgatgcagatgaccaaactaaaagc
ggtggaagccttaatcctgcttttgaagatgcgtggagcagcagtgatgatgagggatga
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