Polypterus senegalus (gray bichir): 120532692
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Entry
120532692 CDS
T08668
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120532692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120532692
Membrane trafficking [BR:
psex04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120532692
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
120532692
RAVE complex
120532692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_IFT140_1st
WD40_Gbeta
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_DCAF12
Beta-prop_Vps41
DUF5635
Motif
Other DBs
NCBI-GeneID:
120532692
NCBI-ProteinID:
XP_039614905
LinkDB
All DBs
Position
7:85780932..86096840
Genome browser
AA seq
3110 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFAVGSINDQPFTAYASGCDIVILGSNFERLQIIPGAKNGNIQV
GCVDCSVQQGKIAASYGNVVCVFEPVQIVNQRNKHTSKCNYQWQKSGQFVLQSIAHNLTW
DPTGTRLLTGSTCIQLWSNVKPKGGFEEKSEEDMSIGCSIGDWKCIWHSKTSSPVHLMKF
SPDGEFFATAGKDDCLVKVWYSTSNWQTATMPLVNLPERTMQSEADYSFVYLAHPRTVTG
FAWRKTSKYMPRGSVCNVLLTCCKDNVCRLWTETLLPNDSLLSGVRHNRSTESVTSTTGH
SRQATSKDQVQDTLELNINQLHKGRRRAAGLVAHMGYLPHQRDTHEVHRNNSALHANALC
HFHIAASINPATDIPLLPSISSLSQDDENELTSPFVVHWLNNKELHFTLSMEVFLQQLRR
SLDHQSLETSTEEQCEGNSKSDEETGNSEDDEEESTGIRDLHGERNHCSTNTMPFSAAAI
DHEIEVLLTEWNKNADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQISFVSRIPVAFP
MGDANSLSRSIIMYACTKNVDLAIQQGKQKPPGMNRSSSMLISFGHSKSSSLKLSIFTPN
VLMISKHADGSLNQWTVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHPVLPLLLTTS
HHNALRTPDVDFMNNCKGVDNVMKHNLLSERLTSTVEDATFQDANAIYSELILWRVDPVG
PLSFSGGVSELARINSLHVSAFSNVSWLPTLIPASCLGTYGKSPCACFVASDGHSLRLYQ
AVTDAKKLLSEVCNPDISKSVGEVFHIVSQQSTARPGCIIELEAITELYGCETQLLHVFE
EDILGGNKIEENIDQVDEGHNLHKGTEECFSQRFYLVVIEFTQTCRSLLHMWLLHLKSAK
IVIAERQEKTENEFLIIPQEEPCNISPEKSPSPQSQLFKACRANLQSASRLTVTSERVYS
QEMNLPDGVEIITATPSAGHLSSSSLHPTGLSPYLLATACSDGKVRFWRCRVDSGHLIYD
SEKSVNNSPAYVWEEWPLLVEDGFPNNSEIRVLGRPVEVSCCNTSHIAVAYKSASSYNTA
RDFTMHVGIFDCESTGGSQWVLEQTLTLDEQSTILDPRISIDSNLTVYNKQDVYLNEIFP
VSNTKHLVHLDWVSREDGSHILTVGIGSKLLMFGQISRHMPDQNAKEAHMASASPLWEYA
KDQPYSKFILLRSVDLVSSFEGALPLPVCLSWVRDGILVVGMDCEMHVYSQWQPPSKSEY
LNMEIDSSSTPSLTTSLKLGQSSTLTTQPSKRSLTRSMTSLAQKLSGKKTMYDLPFEMED
CGLFEAAHELFPTLPQYHPVQLMELMDLGKVHRAKAILSHLVKCIAGEVVALKDNSTNQE
RRLRSLTISASGSTARDPKTFSKTENTDYTEIDSIPPLPLYALLSADQEVSPRAVEKPNS
SVSHNGNQESKKDDYDELFQLSSVPDELSFSDTDGTDTKPTVIDLSQYSPTYFGPEHAQV
LSSHLLHSSLPGLTRMEQMCLMALADTIATTSTDIGESRDKNQGRETLDECGLKFLLAMR
LHTFLLTSLPPAHRVQLTHQGLSTCHFAWAFHSEAEEELLNMLPAMQRGDPTWAELKAMG
VGWWVRNINTLRRCIEKVAKSAFQRNNDPLDAAVYYLAMKKKAVVWGLYRSLKDVKMTQF
FSNNFSEDRWRKAALKNAFSLLGKQRFVHSVAFFLLAGSLKDAVEVCLEKMHDIQLALVI
SRLFESDFETSSTYKNILKKRILGYDSNERTFKMSQMHHDPLLRSMAFWILEDYGRALDT
LLEMPVQEDHQPQATGALSSSCNPMVFNFYNYLRTHPLLLRRHFASSEKLTSKMGLTVES
SLADSISLVERRLFFTTAHSHFKAGCPMLALEVLSKMPKVVRKNKTLLGENISILSDSSQ
DLSLSLDVKEETSSDFDLSQPFVNGFRSVSDGHSDSVLSFDWSQPSLIIPDENLNLKWDT
DEEDIDNEQSGLSMKNIKTENNNIIKEKAEISSTYTESSSTFDITSAVISSDDSITAQLK
FNACLKILTTELRTLSTGYEVEGGKLRYQLYHWLEREVAALQKVCNYNLDMDYSGSINAT
KVDDILSSGRSMESMNNQQNAVRYKEYLQSRHQWLVKNQSLLRMFLSYCSLHGSHGGGLA
SVRMELILLLQESQQDNAQQTPINPEQHQNCVPFLLACTASAKTVVTNPVVYLTNLTHDI
LHTLIDLDSPPHPDIKNNKVHVMHTLAASLSACIYQCLCNSQSYSTSHISQFTGFAYQSF
LMSNLQSIRTVSLDEAVTTNTAPALWPGVGSLIHLLNSAGEEDQPRLTVLLCEILTAVFL
SLFAHGLATHSSNELFRIMAHPLNSMMWAAVFGGGAQIPIKDDIQTKKTTGRHLSIPSPH
QVVVFSMECVGFSKALATTSTHTTTVPAEVDREVGWNLSQTDIENGFGDADPSVNDGTEK
HHRHFKLLSTKGSSKENATPLTDVEQESLTYSEKFIPPELSIWDYFIAKPFLPPSESKAD
YDSEESQESEDEEEYDSATDSQLQEHSNPNSYSWSLMRLAMVQLVLYNLKTLYPMAGHDL
SELPVVSPLCHSILKTLQRWEQVLLKRLEIFGGPPPEYILTNSLEDTVSSGPALLRHKAL
LEPSNTPFRSKYHSALSVKRLWQYLVKQEEIQETFIRNIFAKKICQTETEADQGHPGGKA
RIIHKETDIITAFAINKANRNCIAVASAHDIQELDISAILATQILTWADDEVDMENKTND
DFLVIHAREDYASVQGTTPYTPSSPGTPINMPWLGSMQTGRGASVSFIVQENTAKLNGIR
KDLAKKEMIKRNISNARRMTSHPTLPYYLTGAQDGSVRMFEWGHSQQIICFRPPGNSRVT
RLRFNYQGNKFGIVDADGYLSLWQTNAVGPPKPYLTLQCHNKTANDFIFVGSSSLLATAG
QSSDNRNICVWDTLVTPASSLLHAFTCHESGATVITYAPKNQLLISGGRKGFICIFDLRL
RQLQKTFQAHDSPVKAVAVDPTERHFITGSAEGNMKVWSMSTCTLIHTFLNEHARQSIFR
NIGTGVMQIEAGPTSHIFSCGADGTLKMRILPDHFSIINDVWKNNVKFII
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaagtccttactggagctgtaaatccaggcgacaactgctttgctgtg
ggcagtatcaacgatcagcctttcacggcttatgcatcaggatgtgatattgtcattcta
ggcagtaactttgaaagactacaaattattccaggggcaaaaaatggaaatattcaagtt
ggatgtgtggattgctctgttcaacagggcaagattgcagcctcttatggaaatgttgtg
tgtgtttttgagcctgtccagatagtaaatcagaggaataagcacacttcaaaatgtaac
taccagtggcagaaaagtggtcagtttgttttgcagtccatagcacataatctaacctgg
gatcctacaggaacacgtcttctgactggttcaacgtgtatacaactctggtccaatgtt
aaaccaaaaggaggttttgaagaaaaatctgaagaggacatgagcataggttgtagcatt
ggtgactggaaatgtatttggcatagcaaaacttcatctccagtacatcttatgaaattt
tctccagatggggagttttttgccacagcaggaaaggatgactgccttgtgaaagtatgg
tatagcacaagtaactggcagactgcaacgatgcccctggttaatcttccagaaagaaca
atgcaaagtgaggctgactactcgtttgtgtatcttgctcacccacgcacagtcacaggc
tttgcatggaggaaaacaagtaaatatatgccaaggggttctgtttgtaatgtcttgcta
acatgttgcaaagataatgtgtgtcgtctttggacagagactcttttacctaatgatagc
ttattgtctggagttcgccacaatcgcagtactgagtctgtgacttcaactactggtcat
agtaggcaagctaccagcaaagaccaagtacaggacaccttagagctaaacataaatcag
cttcataaaggaaggaggagagcagctggtttagtggcacatatgggatatttgcctcat
cagcgagatactcatgaggtacacaggaacaactcggctctgcacgcaaatgcactttgt
cactttcatattgctgccagcatcaaccctgcaacagacattccgttacttccttctata
tcttcactgagtcaagatgatgaaaatgaactgaccagtccctttgttgtacactggctg
aacaacaaagaattgcactttactttgtccatggaagtatttttacagcagctgagaaga
agccttgaccatcagtctctagaaaccagcactgaagaacaatgtgaggggaacagcaaa
tcagatgaggaaacaggcaacagtgaagatgatgaagaagagtctacaggcataagagac
ttgcatggagagagaaaccactgtagtactaatacaatgcccttttctgctgcagccata
gatcatgaaatagaagtgctacttacagaatggaacaaaaatgcagacatgctttttagt
attcatcctatggatggttctttattagtatggcatgtagattggctggatgagtatcaa
cccggaatgtttcgtcaagttcagatttcatttgtctcaagaattccagtagcttttcca
atgggggatgctaattctcttagcagaagcattatcatgtatgcatgcacaaaaaatgtg
gatcttgcaattcaacaaggaaaacaaaagccaccaggaatgaatcgttcatcttcaatg
ttaatctcttttggtcacagtaaatctagcagtttaaaactaagcatttttactccaaat
gtccttatgatctccaaacatgcagatggatctttgaatcagtggactgtcagttttgct
gaggaatctgccttttcaacagtacttagtgtctcacataaatctcggtattgtggccat
cgctttcatctcaatgatttggcttgtcaccctgttttacctttgcttctcacaacctcc
caccataatgcactaaggaccccagatgtagattttatgaataactgcaagggtgtagac
aatgtgatgaaacacaacttgctttcagaacggcttaccagcacagtggaagatgcaaca
ttccaagacgccaatgctatatacagtgaactaattctatggagggttgacccagtagga
cctttatcattttctggaggggtatcggagctagcaaggataaattcccttcatgtatca
gcattttcaaatgtatcctggcttccaacattaattccagcaagttgtttaggaacttat
ggaaaatcgccttgtgcctgttttgtggcaagtgatggtcattctctgagactgtatcaa
gctgttacagatgctaaaaagctcttaagtgaagtctgtaatccagatatctcaaaatcg
gttggagaggtatttcacattgtaagccagcagtccactgccagaccaggatgtatcatt
gagcttgaagctatcacagagctttatggatgtgaaacgcagcttcttcatgtgtttgaa
gaagatattctaggaggcaataaaatagaagaaaacattgatcaagttgatgaagggcat
aatttacataaaggcacagaagaatgtttctctcaaaggttttatttggtggtaattgaa
tttacccaaacttgtcgttcattattgcacatgtggcttctgcatctgaaatcagccaag
attgttatagcagaaagacaagaaaaaactgaaaatgaatttttgataatccctcaagag
gaaccgtgcaacatttctccagaaaaatcaccgtctccacagtctcagttgttcaaggcc
tgtagagctaatttacagagtgctagtaggcttacagtcacatctgaaagagtttacagc
caggaaatgaatctacctgatggagtggaaattattactgcaacaccctcagcaggacac
ctgagttcttcatccctgcacccaacaggtctttcaccctatcttttggcgactgcctgt
tcagatgggaaagttcgattttggagatgcagagtggattctggacatttaatttatgat
agtgaaaaatctgtgaataacagtcctgcatatgtatgggaggaatggccgcttcttgtt
gaagatggtttcccaaataacagtgaaatcagagtgttgggaagaccagtggaagttagc
tgttgtaatacaagccacattgctgtggcatacaaaagtgcctcttcctataacacagcc
agagactttacaatgcatgttggaatatttgattgtgaatcaacaggtggttcacagtgg
gttctggaacagacacttacccttgatgaacaaagcacaattttagaccctaggataagc
attgatagtaatttaacagtgtacaacaagcaagatgtatatttaaatgagatttttcca
gtgtccaatactaagcatttagttcatttggactgggtgtctcgagaagatggttcacat
attttaactgttggtattggctccaaacttctgatgttcggccagatttctaggcatatg
ccagatcagaatgccaaagaagcacatatggcttcagcctctcctttgtgggaatatgca
aaagaccaaccttattcaaaatttattcttttaagatcagtagatcttgtttcttctttt
gaaggggcattgcctttaccagtatgcctgtcatgggtgagagatggtattcttgttgtt
ggaatggactgtgaaatgcatgtttattcacaatggcaacccccttctaaatctgaatat
ttgaacatggagatagactctagcagcaccccatcattaacaacatcattgaaactaggc
cagagcagcactttaaccacacaaccttctaaaaggagtcttacaagatcaatgactagt
cttgctcaaaagctcagtggtaaaaagactatgtatgaccttccttttgagatggaggac
tgtggtctgtttgaagctgcacatgagttattcccaactttgcctcagtatcatccagtg
cagttaatggagctaatggatttgggaaaagttcatcgtgctaaagctattttatctcac
ttggtgaagtgtattgcaggagaggttgtggctttgaaagataatagcacaaatcaagag
cgaagacttcggtcactgacaatcagtgctagtggaagcactgcaagagacccaaagaca
tttagtaaaacagaaaatacagactatacagagatagactccattcctcctcttccacta
tatgctcttctatcagcagatcaggaggtatctcctagggctgttgaaaaaccaaacagc
agtgtttcacataatggaaatcaggaatccaaaaaagatgattatgatgaactgtttcaa
ctttcttctgttcctgatgagcttagctttagtgatactgatggaacagacactaaacca
actgttattgacctttctcaatatagtcctacatattttggaccagagcacgctcaagtt
ctgtctagtcatctcttacattccagtttacctgggcttacacgaatggagcaaatgtgt
ttgatggctttagctgatactattgcaaccactagcactgatattggagagagtagagac
aagaatcaaggcagagaaaccctagatgaatgtggtttaaagtttcttttagctatgcgt
cttcacactttcctgttgacctctctacctcctgctcacagagtacaacttacacatcaa
ggactgtcaacatgtcattttgcatgggctttccattctgaagctgaggaagaattatta
aacatgcttcctgcaatgcagagaggggatcctacatgggcagagctgaaagcaatggga
gtaggatggtgggtgcgaaatataaacactttacgaaggtgcattgaaaaggttgcaaaa
tcagctttccagagaaataatgatcctttagatgcagcagtttattatcttgcgatgaag
aagaaggcggtagtctggggtctctacaggtctttaaaggatgtgaagatgactcagttt
ttcagcaataacttcagtgaagataggtggagaaaggctgccttaaagaatgccttttca
cttcttggcaaacagcgctttgtacactctgtagcattcttcttattggctggttcacta
aaagatgcagttgaggtttgccttgagaaaatgcatgacattcagctggctctggtgatt
tcacgactgtttgagtcagattttgaaacatcctccacttacaaaaatatactgaagaag
cggattttggggtatgacagtaatgaaagaacatttaaaatgtcccagatgcaccacgat
cctttattgcgaagtatggctttttggatactggaggattatggtagagctcttgacaca
ttgttagaaatgccagtacaagaagatcaccaaccacaggccacaggtgccttgtcatcc
tcctgtaaccctatggtatttaacttttacaattatttgcgaacccatcctctcttgttg
cgaagacattttgcctcctcagaaaagcttacatcaaagatgggactaacagttgagagc
agtttggctgactctattagtttggttgagaggagacttttctttacaactgctcattca
cattttaaagctggatgccccatgcttgcattagaagtgttgtctaagatgccaaaagta
gtccggaaaaacaagacacttttaggtgaaaacatatcaattttgtcagacagttctcaa
gacctttcactttcattggatgttaaggaagaaacatcttcagattttgatttgtctcag
ccatttgtaaatggttttagatctgtttctgatgggcattcagattctgttcttagcttt
gactggagtcaaccttctttaattattccagatgaaaatttaaacttaaaatgggacact
gatgaagaagatatagataatgaacaatctggcttgtcaatgaaaaacataaaaactgag
aataacaacattattaaagagaaagctgagatcagttctacctatactgagtcgtctagc
acttttgatatcaccagcgctgtaatctcttctgatgacagtattacagctcagttgaaa
ttcaatgcttgtcttaaaatactcaccactgagcttcgaacactatctactggttatgaa
gtagagggtggcaagttaagataccagctgtatcactggttagaaagagaggttgcagct
ttacaaaaagtgtgcaattataatttggatatggactattctggtagcattaatgcaaca
aaagtagatgatattctgtcttctggaagatcaatggaatcaatgaataatcagcaaaat
gctgtacgttacaaggagtaccttcaaagtagacatcagtggcttgtaaagaaccagtct
cttctaaggatgtttcttagttattgcagtctccatggctctcatggtggaggtcttgca
tcagtcagaatggaattaattttactattacaagaatctcagcaggacaatgcacaacaa
acacctataaatcctgagcaacaccaaaactgtgtgcctttccttttagcatgtactgca
agtgcaaaaacagttgtaactaatcctgtggtatatctgacaaacctaacccatgacatt
ctgcatactctaatagacctagactcacctccacacccggacatcaaaaataacaaggtc
catgtaatgcataccttggcagcatcactttcagcctgcatctatcagtgtctttgcaat
agccaaagctacagtacctcccatataagccagtttactggatttgcgtatcagagtttt
ttgatgtcaaatcttcagtctatacgaactgtaagtttagatgaagcagttacaacaaat
acagcaccagcactgtggccaggtgtaggatcactgatacatcttctaaattcagcggga
gaagaggaccaacctcggttgacagtgctgctttgtgagattttgacagcagtttttctg
agtttgtttgcccacggtctagctacacattctagtaatgaactttttcgaatcatggct
catccattaaatagtatgatgtgggcagctgtgtttggtggtggagctcaaatacctatt
aaagatgacatccaaacaaagaaaacaacaggaagacacctttctatccctagtcctcat
caggtagtagtgttctccatggaatgtgtggggttttctaaagcccttgcaaccaccagt
acacataccacaacagttccagcagaagtagaccgtgaagttggctggaatttatctcaa
accgatatagaaaatggttttggagatgctgatccttctgttaatgatggaacagaaaag
catcacagacattttaaactgttatccaccaaaggttcaagcaaagaaaatgcgactccc
ttaacagatgttgagcaggaaagtctaacatatagcgagaaattcattcctcctgaactt
agtatctgggattactttatagctaagccatttctgccaccgtcagagagcaaagcagac
tatgattcagaagaaagtcaggaaagtgaagatgaggaagaatatgattctgccacagat
tctcaacttcaggagcactccaatcctaattcatatagctggtcactgatgcgtttggca
atggtgcagttggttctttacaacttgaagactttgtacccaatggcaggccatgatcta
tcagagttaccggttgtttctcctctttgccattccattcttaagactctgcaaaggtgg
gagcaggtacttcttaaacgactagagatttttggtggtccaccccctgaatatatttta
acaaactctttggaagacacagtgtcatctggacctgcgcttctgcgtcacaaggcattg
ttggaaccatcaaacacccctttccggtcaaagtaccattcagcactttctgtgaaaagg
ctatggcagtaccttgttaaacaggaagagatacaggaaacatttatccgaaatatattt
gctaaaaaaatatgtcagactgagacggaagcagaccagggacaccctggaggaaaggca
aggattatccataaagaaactgatattataactgcatttgctattaataaggcaaatcgc
aattgcatagcagttgcttcagcacatgacattcaagagcttgatatttctgcaattttg
gctacccagattttaacgtgggctgatgatgaagtagatatggaaaataaaacaaatgat
gatttcttggttattcatgcccgtgaagattatgcgtctgtgcagggcactactccatat
actcctagtagtcctgggacaccaattaacatgccttggttgggaagcatgcagacagga
agaggagcatcagtgtcattcattgttcaggaaaatacagctaaattaaatggaatcaga
aaggatttggcaaaaaaggagatgattaaaagaaatataagcaatgctagaaggatgaca
tcccatccaacgttaccttattatttaacaggagctcaagatggcagtgttcggatgttt
gaatggggtcactcccaacagatcatttgtttccggcctcctggaaattcaagagttaca
aggttaagatttaattatcagggtaacaagtttggcattgtggatgcagatggatatctt
agcctttggcagacaaatgcagtaggcccaccaaagccatatttgacattacaatgccac
aacaagactgcaaatgactttatttttgtgggatcatcatctttattggcaacagctgga
cagtctagtgataacaggaatatttgtgtttgggatactctggtgacaccagccagtagc
ttattacatgcctttacttgccatgagagtggggctactgtgatcacatatgctccaaag
aatcagctgttgatatctggaggaagaaaagggtttatctgtatatttgatttgcgccta
agacagctccaaaaaacattccaggctcatgattcaccagtcaaggctgttgctgtagat
ccaactgaaagacactttataactggatctgcagagggtaatatgaaggtttggagtatg
tctacatgtactctaatccacactttcctcaatgaacatgctcggcaatccatcttcaga
aacattggaactggagtgatgcagatagaggctggtccaacaagtcacattttctcttgt
ggagctgatggcacgttgaaaatgaggatcctaccagaccactttagcattataaatgat
gtctggaagaataatgtgaaatttattatttaa
DBGET
integrated database retrieval system
