Polypterus senegalus (gray bichir): 120533067
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Entry
120533067 CDS
T08668
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04382
Cornified envelope formation
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
psex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120533067 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120533067 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120533067 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120533067 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psex04147
]
120533067 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120533067 (col4a4)
Exosome [BR:
psex04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120533067 (col4a4)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120533067 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120533067
NCBI-ProteinID:
XP_039615642
LinkDB
All DBs
Position
1:complement(144905908..145071548)
Genome browser
AA seq
1675 aa
AA seq
DB search
MEMTTCLIRIKKYPLTIWLITTLYFGKIVCGGNIEINGLCGGRDCSACQCFPAKGSRGRQ
GDLGSQGPSGPQGPPGPPGLQGAKGSSGEPGYPGHTGDRGDMGPMGVPGFHGIRGIDGLP
GFAGPMGPPGADGCKGMQGVDGAPGYPGIHGTTGIQGIPGQKGQKGEPITVYVCIKGLPG
DGGLPGLPGGDGAEGPHGLKGARGPAGVPGPKGTHGVVGLQGERGVPGRPSPGPKGNQGE
QGPPGPPGKYELINTPDFCNKGEKGEKGKEGRTGIPGLPSVPLQGAKGEKGVIGFPGSRG
NPGSQGKPGFRGRMGAKGFQGLPGLNGFPGQKGQKGDLGDAGPVEYVTSETPGPLGDIGF
PGFPGPDGEDGCPGQPGLPGPSGISDSARPFGIPGLPGPLGPKGYKGEIGKTDVDIGPPG
KRGPPGLPGPVGQPGPAVTIEVCVLGPLGGTGEKGKRGPPGFIGVKGYKGIAGDCLFNIS
MDMMKGSPGFPGERGFPGRYGSQGETGDPGNPGPMGLVGLKGMPGIPGEPGQKGMKGTMT
MMDIKGDKGEKGNPGYVGFGGVQGRPGLDGLNGLMGKPGETGERGPIMKGEKGLPGSEGQ
PGPTGFRGPPGPGIAGPIGKRGFPGDSGPPGITGAPGNKGQKGDEPVSPCPPSDMTGVPG
PKGFQGVPGERGFPGDRGFPGRNGLDGPKGEKGDQGFPGAPGLAGIRGSTGEQGDTGPEG
LRIDGLPGLPGLSGLLGLKGHPGDSAIGSTGSPGQKGLPGLNGLKGHTGEPGIPGINGVP
GEPGLSGFKGLPGDPGIMGPLGLQGEPPAVCDPGPPGLPGLEGDMGPQGLSGFKGLKGEV
GLPGVPGLPRIKGLKGIPGIPGIPGQQGSPGQPGCPGDIGHSGPPGPPGLRGASGIEGFP
GPCGIPGIPGSPGSKGEKGFDGKRGYAGDIGNQGEKGVKGVLGFQGEVQINYIRGDGGDP
GFPGEIGFTGPRGEKGLSGLKGLPGDDGTDGPPGFLPGIDGKRGLPGLPGSPGMPGSKGY
NGIIGFPGMNGDHGDPGLSGTVGSPGFPGLKGIKGDQGDTVVMPGIPGPKGLPGDRGNSG
RQGQAGDPGFPGSYGQPGERGVPGAPGSRGKPGEQGQMGVIGLCGQNGLEGPPGVPGSLG
VPGPDGDGGLRGPPGPLGLHGLDGLKGQKGQKGSPGRSDEGEPGISGQPGVKGDPGDQGS
PGIYENGPKGSQGPKGYTGSQGPLGPPGPPGPAAGPCEGAPHGPPGDTGLSGVDGQQGPP
GYPGHPGSVILIKGDPGDDGMIGLPGLRGNTGFSGCPGTPGDIGSPGQKGEQGIYGPNGL
QGPPGPPGVCGEYGQPGDPGSPGDVGDKGSQGRTIRRQCDPALPGQNGPSGLQGLRGPAG
PLGIFGEVGLRGDKGLQGSPGLPGKEGTVGLQGPPGDTGYPGERGDTGPQGLPGPAGNPG
SPGLSRKTNFGFLLVMHSQTENVPKCPNDMTTLWNGYSLLYLEAQEKADSQDLGLAGSCL
PMFSTMPFAYCNVNGVCQYGRRNDKSYWLSTAAPIPMAPVSEEDIRPYISRCSVCEVPSQ
VIAVHSQEQSIPQCPSGWRSLWIGYSFLMHTAAGDEGGGQSLTSPGSCLQDFRTIPFIEC
QGAQGTCHYFSNIYSFWLTTIKEDRQFRRNHSSETLRDEQLKRQRVSRCQVCMKE
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atggagatgactacttgcttgataaggattaaaaaataccctttaactatttggttgata
accacattgtattttggaaaaattgtttgtgggggtaacattgaaattaatggtctctgt
ggtggacgagactgttctgcttgccaatgttttccagccaaaggatctcggggtcgacaa
ggtgatctaggttcccagggcccatctggcccacaggggccaccaggacctcctggatta
caaggagcaaaaggaagcagtggagaacctggctatcctggtcatacaggggatcgggga
gatatgggccctatgggtgttccaggatttcatggcatcagaggtatagatggtttacca
ggttttgctggtccaatgggtcctccaggtgctgatggctgcaaaggaatgcaaggtgtt
gatggagcccctggatatccaggaattcatggaacaacaggaatacaaggtattcctggg
caaaagggacagaaaggagagcccatcacagtctacgtttgcataaaaggtctacctggt
gacggaggccttcctggactacctggaggagatggagcagagggtccacatggccttaaa
ggagctaggggtcctgcaggcgtgcctggtccaaagggaacccacggcgtggttggtctg
caaggtgaaaggggtgtaccaggaaggccatcaccaggacctaaaggcaatcagggtgaa
caaggcccacctggaccacctggaaaatatgaacttattaatactcctgacttttgcaat
aaaggagaaaagggagaaaaaggaaaagaaggtagaactggaattcctggcctcccatca
gttcctcttcaaggagcaaaaggagaaaagggagtcattggatttcctgggagtcgaggt
aatcccggttctcagggaaaacctggctttcgtggaaggatgggggcaaaaggatttcag
ggactgcctggattaaatggatttcctggacaaaagggtcaaaaaggcgaccttggtgat
gcaggtcctgttgaatatgtgacttcagaaacaccaggtcctcttggagatattggcttt
cctggtttccctggccctgatggagaagatggttgccctggtcagccaggtttaccagga
cccagtggaatatctgatagtgcaagaccatttggaataccagggcttcctggacctcta
ggacctaaaggatataaaggcgaaataggaaaaacagatgttgacattggtcctccaggg
aagagagggcctccaggattacctggccctgtcggtcaacctggaccagcagtcacaatt
gaggtttgcgtcttgggacctttgggaggaacaggagaaaagggaaagagaggccctcct
ggcttcattggagtaaaaggttataaaggtattgctggagactgtttatttaatatatca
atggatatgatgaaaggatctcccggatttccaggagagagaggttttccagggagatat
ggatcacagggtgaaactggagaccctggtaatcctgggccaatgggtttggtaggacta
aaaggtatgccagggataccaggagaaccaggtcaaaaggggatgaaaggcactatgact
atgatggacattaaaggtgacaaaggagagaaaggaaatccagggtatgttggatttgga
ggtgtacagggaagacctggtcttgatggtctcaatggactgatgggaaaaccaggagaa
accggagaaaggggtcctattatgaaaggagaaaagggattaccaggttcagaagggcaa
ccaggtccaacaggtttccgaggccctcctggacctggaattgcgggccccattggaaaa
cgaggctttccaggagattcaggtccaccaggtatcactggtgccccaggcaataaagga
cagaaaggagatgagcctgtttcaccttgcccaccttcagatatgacaggggtcccaggt
ccaaaaggatttcaaggagtcccaggcgaaaggggttttcctggagaccgaggatttcct
ggtcgcaatggtcttgatggcccaaaaggagaaaagggtgatcaaggattcccaggtgca
cctggacttgctggtattcgaggaagtacaggagagcagggtgatacaggtcccgaagga
ttaagaatagatggtctcccaggtctcccaggtctctcaggtttacttggtctaaaagga
catcctggagactccgccatcggcagtacaggaagccctggacagaaaggcttgccagga
ctcaatggcctcaaaggacatactggagaaccaggaattccaggaatcaatggagtccct
ggagagccgggtctttcaggtttcaaaggacttcctggtgacccaggaatcatgggacca
ctcgggctgcagggggaaccaccagcagtctgtgatcccggaccaccaggattaccaggt
cttgaaggggatatgggtcctcaagggctttcaggttttaaaggcttgaaaggagaagtg
ggccttccaggtgtgccaggactgcctaggatcaaaggacttaaaggcattccagggata
cctggaattcctggccaacaaggttccccgggtcaaccaggatgcccaggagacattggt
cattcaggtccaccaggaccaccaggattgcgaggtgcttcgggcattgaaggtttccct
ggaccttgcggaatacctgggatacctggatctccagggtcaaaaggagaaaaaggtttt
gatggcaaaagaggctacgcaggggatataggaaaccaaggagaaaaaggtgttaaaggt
gtcctaggattccaaggagaggttcagattaactacatcagaggagacggaggagaccct
ggctttccaggagagattggatttactgggccaagaggtgagaagggcctatctggcctc
aaaggtttacctggagatgatggcacagatggccctcctggatttttgcctggcatagat
ggtaaaagggggcttcctggcctacctggatcacctggaatgccaggttcaaaaggctat
aatgggataattggatttcctggaatgaatggtgaccatggagatcctggtttatcaggt
actgttggcagtccaggttttccaggattgaaaggaattaaaggtgaccaaggagatact
gttgtcatgccgggaattcctggaccaaaagggcttccaggtgacagaggaaattcagga
aggcaaggtcaagcaggagatccaggttttccaggctcatatggacaaccaggagaacga
ggtgtaccaggcgctcctggaagtcgaggaaaaccaggagaacaaggtcaaatgggtgtt
attggtctatgtggccaaaatggattggaggggcctccaggagttccaggatcccttgga
gtaccaggacctgacggtgatggaggacttagagggccacctggaccacttggtctacat
ggtcttgatggactaaaaggacaaaaaggacaaaaaggatctccaggaagaagtgatgag
ggtgaacctgggatcagtggacagcctggtgttaaaggtgatcctggtgatcaggggtct
cctggcatatatgagaatggtcctaaagggtcacagggtcctaaaggttacacaggaagt
caaggtcccttgggtcctcctggtcctccaggtccagcagctggaccatgtgagggagcc
ccccatggacctcctggtgacactgggctttcaggcgttgatggtcagcaaggtcctcct
ggctacccaggtcatcctggctcagtcatcttaataaaaggagatccaggagatgatgga
atgattggactaccaggccttcgtggaaatacaggcttttcaggatgtcctggcactcct
ggagatattggatcaccaggacagaagggtgaacaaggaatctatggacctaatggacta
caaggtcctcctggaccaccaggggtgtgtggtgaatatggtcagcctggcgatcctgga
agcccaggagatgtgggtgataaaggttcacagggtcgaacgattagaagacaatgtgat
ccagcactgccaggacagaatggaccatctggattacaaggactacgggggccagccggt
cctctgggcatttttggtgaagttggactcagaggtgacaaaggtttacaaggatccccc
ggattgcctggaaaagaaggcactgttggtttacaaggcccaccaggagatacaggatat
ccaggagaaagaggagatactggaccccaaggtctgcctggtcctgcagggaacccggga
tccccagggctgagtagaaagactaactttgggttcctgctggtcatgcacagtcagaca
gagaatgtgccaaagtgcccaaatgacatgacaactctgtggaatggctatagcttatta
tatttggaagcacaagagaaggctgacagccaagatcttggcctggctggatcatgtcta
ccgatgtttagcacaatgccatttgcttactgcaatgtcaatggagtctgccagtacggt
agaagaaatgacaagtcttactggttgtccacggcagcacctattccaatggcgccagtc
tcagaagaagacatccgtccatatataagccgatgctccgtgtgtgaagttccttctcaa
gtcattgctgtccacagtcaggagcagagcattcctcagtgtccttctggatggagaagt
ctttggattggctactcatttttaatgcacactgcagcaggagatgaaggaggtgggcag
tcgttgacgtcacccggaagttgccttcaggacttcagaaccattccattcatcgaatgc
caaggagcacaagggacttgccattacttttcgaacatctacagtttctggctcacaacc
attaaagaagacagacagtttagacgcaaccattcatctgagacactgcgtgacgagcaa
ctgaaaagacagagggttagccgatgccaagtgtgcatgaaagaatga
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integrated database retrieval system
