Polypterus senegalus (gray bichir): 120533775
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Entry
120533775 CDS
T08668
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03008
Ribosome biogenesis in eukaryotes
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
psex05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120533775 (nxf1b)
03015 mRNA surveillance pathway
120533775 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
120533775 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120533775 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120533775 (nxf1b)
03009 Ribosome biogenesis [BR:
psex03009
]
120533775 (nxf1b)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120533775 (nxf1b)
mRNA cycle factors
Stress granule specific factors
120533775 (nxf1b)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
120533775 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_4
LRR_9
LRR_8
Motif
Other DBs
NCBI-GeneID:
120533775
NCBI-ProteinID:
XP_039616659
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All DBs
Position
8:complement(11059238..11146960)
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AA seq
657 aa
AA seq
DB search
MAFRRRRFQNFQVVRQVHFDEHGVYDGRQEATFLPIGYSEHDDRVGGPTFRTKKGRGPFR
GKMYSEQTSRQRYRGGAAPGPRSRYEDDDDGDVSMSESLHDSGQRRYMPYGTRPGRRGEE
RHDNDRDRAGTSNNLSGLRLSPREGSSRKGWFKVTIPFGKKYSNSWLLSTLQGLCMAPFE
PVQLHYEGQKAVFYVEDSNIANALKASSKKIRDKENFKLIILVRSSSPPSSVVRQELLKP
EAVEILKQCMSKRYDRTQQALDLSNLRSDPDLLSQNIDAVLNRKNIMQAVVKIIEEYIPE
LLSLNISNNKLYKLNNLTDLVGKAPNLKILNLSQNELKSDRELDRIKGFKLEELWLDGNP
LCDFSKDQTAYIRVVRERFPKLLRLDGHDLPLPITFDVEAPTTLPPCKGSYFGSDEIKSL
VLRFLHQYFYVYDSGDRQALLDAYHDGASFSVCIPISLPNPSRNALGEYHKDSRNLKKVK
DPTNRFRMLKHTRLNVVAFLNELPKTQHDVNSFVVDVHAYTNMLLSFTVNGVFKEVDDKS
PHSVRAFTRAFIAVPSGNSGLCIVNDELFVRKASSEEIRKAFATPAPTPSSSPVPTLTAR
QQEMLAEFSQRSGMNLEWSQKCLLDNDWDYTRAGQVFEKLNAEGKIPEVAFKQYKLQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcattcagacggcggagatttcagaatttccaggtggtgcgacaagtgcatttcgat
gagcatggtgtctatgatgggcgacaagaggcaacgttcttgccgattggatactcagag
catgatgaccgtgttggtggccccacatttcgcaccaaaaagggcagaggtccatttcgg
ggaaagatgtacagtgaacagacatcaagacaacgataccgtggtggagctgctcctgga
cctcgttcacgttatgaggatgatgatgatggtgatgtttcaatgagtgaaagtttacat
gactctggccaacgacggtatatgccttatgggactagacctggacgacgtggtgaagag
agacatgataatgacagagacagagctggaacatcaaacaatctgagtgggcttcgcctg
tcacctcgtgaaggttcctcccgaaaaggctggtttaaagtcactatcccatttggaaaa
aagtattcaaactcctggctgctgtctacacttcaggggttgtgtatggctccatttgaa
cccgtgcagcttcattatgaaggccaaaaagctgtattttatgtggaagattcaaatatc
gcaaatgctttaaaagctagttccaagaaaatcagagacaaagaaaattttaagcttata
atcctggtacggtcctcttctccaccatcctctgttgttaggcaagagctcctgaaacct
gaggcagtagaaatcttgaagcaatgcatgagtaaacgatatgatcggactcaacaagca
cttgatttgagcaacctccgaagtgatccagatctgttgtctcaaaatattgatgctgtt
ttaaaccgcaagaatatcatgcaagctgtagttaagattattgaagaatacattcctgag
cttctgtctctgaatatcagtaacaacaaactttataaactgaataatctgactgactta
gtgggcaaggcaccaaacctaaagattttaaacttgtcacagaatgagttaaagtctgat
cgtgagcttgaccgaataaaagggtttaaattggaagaactatggttggatggaaacccc
ttatgtgatttctctaaagaccagaccgcttatatcagagttgtcagagagcggtttcca
aaactcttgagattggatggccatgatcttcctcttcctattacttttgatgttgaagct
cctaccactcttcctccatgcaagggaagttactttggatctgatgaaatcaaaagcttg
gttttaagatttttacatcaatacttctatgtgtatgactctggagatcgacaagctttg
cttgatgcatatcatgatggagccagtttttcagtttgcattcctataagtttacccaac
ccctcaagaaatgctttgggtgaatatcacaaagacagtcgaaacctaaaaaaagtaaaa
gatcccaccaatcgattcaggatgttgaagcacacccggctcaatgttgttgctttcctt
aatgaactcccgaagacacagcatgatgtcaattcatttgtggtggatgtccatgcatat
actaatatgttactaagttttactgtgaatggagtcttcaaagaagtggatgacaaatct
ccccattctgtgagagcttttactcgagcatttattgctgtaccatctggaaattcaggg
ctgtgcattgtaaatgatgagttgtttgtaaggaaagcatcctcggaagaaattcgaaaa
gcttttgctactccagcacctacaccttctagcagtccagtacctacattgacggcacgg
cagcaagagatgttggcagaattttcacaacgatctggtatgaaccttgaatggtcccaa
aagtgtcttctggataatgattgggattatacccgggcagggcaggtttttgaaaagctc
aatgcagaaggaaagatccctgaagttgctttcaaacaatacaagcttcagtag
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