Polypterus senegalus (gray bichir): 120533860
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Entry
120533860 CDS
T08668
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120533860
Enzymes [BR:
psex01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120533860
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120533860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
Sina_ZnF
zf-RING_2
zf-TRAF
zf-C3HC4_3
zf-RING_5
zf_C2HC_14
zf-rbx1
IBR_1
zf-RING_6
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
120533860
NCBI-ProteinID:
XP_039616840
LinkDB
All DBs
Position
8:complement(29695647..30114369)
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AA seq
1055 aa
AA seq
DB search
MGFELDRFVGAVDPDFKCRLCSKILEEPLSTPCGHVFCAGCLLPWAVQQRLCPLQCQPIS
AKELHQVLPLRNLILKLDIKCDYNARGCTKTVKLQELRDHAEMCDYSPSQCRNKGCNEVF
NLKDMDSHMRESCEYRPVGICQKGCGLVLLHKDVAQGSHCCLRALRAQNVALQVKSAALE
QEAKKQAVRWGKREKSLLAQVSALQSEVQLTALRCQKKFNQYVSRMSSLSKPVGLQCTGG
EQKPLSIILHKESDTLGFNIIGGRPSQNESAAEGIYVSKITENGPADRPDGLQLHDRIIE
VNGKDLSKATHEEAVEAFRSAKEPIVVQVLRRTPITKSHGNPQEIQLVDVCTQTDITFEH
IMALSKLRPSTPPVPDICPFLLSDSCHSLHPMDNEYYDGNEFLSTIPADADRTEEFEYEE
VELCRVNSQEKLGLTLCYRTDEEEDMGIYVSEVGPNSIAARDGRIREGDRILQINGCDVQ
NREEAVALLAREDCRNIVLLVARPEIQLDEGWLDDERNEFLEELNMEMLEEQHNEAMQHT
ANGLDQPKKIEEDDGTTDTATTSSNNHEKDSGVCRTDESVRHDESSEQENMGDSQKEASL
HLKRDLGLSQEIVESNDAQCSESLVSGEYIDSDCTGAQDEECERFRQLLELKCKIRNSGE
YDLYYSRSSTIECSLKEQDGMERELQLLNEELRNIELECQNIMQAHKLQNAREQYANLWS
VHDEGFQTYSTSIDLQRTKLADIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSSDNSLQ
RMISLTNKKNLRSTIAANQMCARKDSKDVSLATTKSSGPNNITEENEKATDGRRIDEQEM
AGSQQVPYLSPYHSSQYRHTNIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDLQK
STEPKMEWKVKIRSDGTRYITKRPVRDKILKERALKIKEERSGMTTDDDTMSEMKMGRYW
SKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNK
KILDNWMTIQELMTHGARSPEDKKVHNAFLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgagttggatcgttttgtcggagccgtggacccggatttcaagtgcaggctg
tgcagcaaaattctggaggaacccctgtccaccccgtgcggacacgttttctgtgcaggc
tgcctgttgccttgggcggtgcagcaaagactctgcccgctgcagtgccagcccatctcc
gccaaagagctgcaccaggtccttccacttcggaatctcatcttgaaactggacatcaag
tgcgactacaatgccaggggttgtacgaagaccgtcaagctgcaggagttaagagaccac
gccgaaatgtgtgactacagcccttcacagtgtaggaataaaggatgcaacgaagtgttc
aacctcaaggacatggactctcacatgagggagagctgcgagtacagaccagtgggcatt
tgccagaagggttgtgggctggtgctgctgcataaggatgtggcacagggaagtcactgt
tgcttgcgagccctccgtgcccagaacgtggccctccaagtgaagagcgcggcgttggag
caggaggcaaagaagcaggcggtccgttggggtaaacgggaaaagtcgcttctggctcag
gtctcggcgctacagagcgaagtacagctgactgcactgcgctgccagaagaagttcaac
caatacgtgagccgaatgagcagcctcagcaaacccgttggcttgcagtgcacgggagga
gaacagaagccacttagcataattctccacaaggaaagtgacactctaggattcaatatt
attggtggcaggccaagtcagaatgaatctgctgcggaaggaatttatgtttccaaaatt
actgagaatggacctgctgacagacctgatggactccagctacatgacagaatcattgag
gttaatgggaaagatctttccaaagctactcatgaagaggcagtggaagcatttcgcagt
gccaaggaaccaattgtggtgcaagttttacgaagaacacccattaccaagagccatggc
aaccctcaggaaatccagcttgtggatgtttgcacgcagacggatattacttttgaacac
ataatggcactttccaaattacgaccctcaacccctccagtacccgacatctgtccattc
ctgctgtctgacagctgccactcactgcatccaatggacaatgaatattacgatggcaat
gagtttctatccaccatacctgcagatgcagatagaaccgaagagtttgagtacgaggag
gtcgaactgtgtcgtgtaaacagccaggagaagcttgggctcaccctctgttatagaact
gatgaagaggaggacatggggatctatgtcagtgaggttggtcctaacagtattgctgcc
agggatggccggattagagaaggcgaccgcattttgcagataaatgggtgtgatgtccaa
aacagggaagaagccgtggcactgcttgcccgagaggactgcagaaacattgtattgctt
gtggccaggccagaaatacagctggatgaagggtggctagatgatgaaagaaatgagttc
ttggaggagctcaatatggagatgctggaagaacaacacaatgaggcaatgcaacacaca
gccaatggactagatcagccgaagaaaattgaggaagatgatgggacgactgacacagca
acgacctcttccaacaaccacgagaaagacagtggagtttgccggacagatgagagtgta
cgtcatgatgagagctcagagcaggagaacatgggggatagccagaaagaagcttccctc
catcttaagcgtgacctgggtctcagtcaggaaattgttgagagcaacgatgcacagtgt
agtgaaagtttagtttctggtgaatacattgactctgattgtactggagcccaagatgaa
gagtgtgagaggtttcgtcagctcttagagttgaagtgtaagataagaaacagtggggaa
tatgacctgtactacagccgcagtagcacgattgaatgcagccttaaagagcaagatggg
atggaacgtgaactgcagttactcaatgaagagcttagaaatattgaactggaatgtcag
aatatcatgcaagcccataagctccaaaatgcaagggagcaatatgccaacctttggtct
gttcatgatgagggctttcaaacatacagcaccagcatagacctgcagagaactaaactt
gctgatatcatggagcatccagagaaatctgacaaggatagttccagtgcatacaacact
gcagagagctgtcgcagtacgccattaactgtggatagatcttcagataactctttgcag
agaatgattagcttaacaaacaagaaaaatctgaggagcaccatagcggcaaaccaaatg
tgtgctaggaaggacagcaaagatgtcagtctagctacaaccaaaagttctgggccaaat
aacatcacagaggaaaatgaaaaagccacagatggcagaagaattgatgaacaggaaatg
gctggttcacagcaagttccttacctttccccctatcatagttctcagtacagacacact
aatatacctgctcatgcccgacactatcaaagttatatgcaactcatccagcagaagtct
gcagtggaatatgctcaaagtcagctgagccttgtaagcatgtgcaaagatttgcagaaa
tcaacagaacctaaaatggaatggaaagtgaaaattcgtagcgatgggaccagatatatc
acaaaacgaccagtcagggacaaaatccttaaggagcgtgccttaaagatcaaggaggaa
cgcagtggtatgacgacagatgatgatacgatgagcgagatgaaaatgggacgatactgg
agcaaagaagagaggaagcaacatcttgtgcgggccaaagagcagcgacgccggcgggaa
ttcatgatgcgcagtcgcttggagtgcctgaaagagagtccccaaagtggcagtgagggg
aaaaaggaaatcaatattattgaacttagccacaaaaaaatgatgaagaaacgaaataag
aaaatcttggacaattggatgacaatccaagaactgatgactcatggggccaggtctcca
gaggacaaaaaagtacataatgccttcttgtctgttactactgtgtaa
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