Polypterus senegalus (gray bichir): 120534054
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Entry
120534054 CDS
T08668
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120534054 (upf2)
03015 mRNA surveillance pathway
120534054 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120534054 (upf2)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120534054 (upf2)
mRNA cycle factors
P-body specific factors
120534054 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
pPIWI_RE_Y
Motif
Other DBs
NCBI-GeneID:
120534054
NCBI-ProteinID:
XP_039617228
LinkDB
All DBs
Position
8:74015886..74099015
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AA seq
1265 aa
AA seq
DB search
MPAEYKTSINMDEKEDLGEKRPTCAKEKNKEECKLGSKKDNLKLCEDKKKKSEEEKRKKE
EKERKKKEEEKIKAEEEQKKKEEEEKRKMEEEEKMKQEEAEKRKREEEAARLKEKEEGHQ
LHQEAWERHQARKELRSKNQNAQEGRPEETYFSRLDSSLKKNTAFVKKLKTITEQQRDTL
SNDFNSLNLSKYIAEAVGSIVEAKLKTSDVGCAVHLCSLFHQRYADFAPLLLQAWRKHFE
ARKEEKTPNVSKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKTIINTDRETHMHVSVVI
SFCKHCGDDIAGLVPRKVKMASEKFNLCFPPSEIISSEKQQPFQNLLREYFTSLTKHLKK
DHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLTNTQSLADLLDENMPELPQ
DKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAILFKDNERS
SQTKEFVKDDAKDSREGKDMKCTEELEMELENLDINDDTMELEGGEEGESDDLAKKLLDE
QEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFT
VPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIETKNKTVRFI
GELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRTTDSHLRTSVLLEQ
MMRKKQAMHLDARYVTMVENAYYYCNPPPVEKAVRKKRPPLQEYIRKLLYKDLSKVTTEK
VLRQMRKLPWQDPETKNYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVL
EDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFISFGVNPDGSASPL
DPPEHLFRIRLVCTVLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSLDVWTKDHPFPI
DIDYMISDTLELLRPKMKLCCSLEDAVRQVAELEREFLVKLGLTNDKDSKDPSNLGEGEN
IDDDDDDDDEGGAETEEQSGNESEMNDPEEEEASENEEEEGEEEEEENTDYMTDSNKENE
TDEENTEVTIKGGGLKHIACAEDEEFIQALDKMMLENLQQRSGESVKVHQLDVAIPLQLK
SQLRKGPPPACVGDDNEIVDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQE
ERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKT
GGRRR
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagaatacaagacatcaataaacatggatgagaaagaagaccttggagaaaaa
agaccaacctgtgccaaagaaaagaataaagaagaatgtaaactaggcagcaaaaaggat
aatttgaaactatgtgaagacaaaaagaagaaatctgaggaagaaaaacgtaagaaagaa
gaaaaggagcgtaagaagaaggaggaagaaaaaataaaggcagaagaggagcagaagaag
aaagaagaggaggagaaaagaaagatggaggaggaggaaaagatgaaacaagaagaagca
gagaaaaggaaacgagaagaggaagcagcaagactgaaagaaaaagaagagggacatcag
ctgcatcaagaagcctgggaacgccatcaggcgagaaaagaactgcgtagcaagaaccaa
aatgctcaggaaggtcgtccagaggagacttactttagtagactcgattctagcctcaaa
aaaaacactgcatttgttaaaaagcttaaaacaattacagagcaacagagggatactctt
tccaatgatttcaatagccttaatctcagcaagtacattgcagaagctgtgggctctatt
gttgaagcaaaattaaaaacttcagatgttggttgtgctgtacatttgtgctctctcttt
caccagaggtatgctgactttgctcctttgcttctccaggcctggagaaagcattttgaa
gcaagaaaagaggaaaaaacaccaaatgtgagcaagcttaggactgacctacggttcatt
gctgagctcacaatagtgggcatttttactgataaagagggtctatcccttatctatgag
cagctgaaaaccatcatcaacacagaccgagaaactcatatgcatgtgtctgtagtgatc
agtttttgcaaacattgtggagatgacattgctggacttgtgcctaggaaggtaaagatg
gcttcagaaaaatttaatttgtgttttcctcccagtgaaatcattagttctgaaaaacaa
cagccattccagaaccttctgagagaatatttcacttctctgaccaaacatctaaagaag
gaccatagagaacttcaaaacattgaaagacaaaacagacggattctccattctaaagga
gagctcagtgaagatcgtcataaacaatatgaggaatttgctacatcatatcagaaactc
cttactaatacccagtctctcgcagaccttctggatgaaaacatgcctgaacttcctcag
gacaaaacggtgcaagaagaacatggtcctggaattgacattttcactccagggaagcct
ggggagtatgatttagaaggaggtatctgggaagatgaggatgccagaaatttctatgaa
aatttaattgatctgaaagcctttgttcctgctattcttttcaaagataatgaaaggagt
tctcaaaccaaagaatttgtcaaagacgatgcaaaagattcaagggaaggaaaagatatg
aaatgtacagaagagctggaaatggagttagaaaatcttgatataaatgatgataccatg
gaactggaaggtggagaagagggggagagtgacgacctggcaaaaaaattgcttgatgaa
caagagcaagaagacgaagaggccagcacaggttcccatctgaagttgatagttgatgca
tttcttcaacagctgccaaactgtgttaacagagacttaatagataaggctgcaatggat
ttctgcatgaatatgaatactaaatctaacagaagaaagcttgtacgagcactctttact
gttccgaggcaacggttggatttactcccattttatgctcgacttgtcgccactttacat
ccctgcatgtctgatgtagcagaagatctctgttctatgttgaaaggagacttcaggttt
catgtgcgaaagaaggaccaaatcaatattgaaactaaaaataaaactgtgagatttata
ggagagctaactaagttcaagatgttctctaaaaatgacacacttcactgtttgaagatg
ttattgtcagacttttcccatcaccatattgaaatggcgtgtacacttctggaaacatgt
ggccgtttcctcttcagaacaactgattcacatttgagaacaagtgttcttttggagcaa
atgatgcgaaaaaaacaagcaatgcacttagatgcccgttatgtcaccatggttgagaat
gcttattattattgcaatccaccaccagttgaaaaagcagtgaggaagaagagaccacca
cttcaagagtatattcgtaaactactttacaaagacctctccaaggttacaacagaaaag
gtactgaggcagatgagaaaattaccatggcaggacccagaaaccaaaaattatttaatc
tgctgcatggtcaatatttggaatgtgaagtataacagcattcactgtgtggccaacctt
cttgctggcttagttgcctatcaagaagatgtaggcatccatgtagttgatggtgttttg
gaagatataagacttggaatggaggttaaccagcctaaatttaatcaaagacggattagc
agtgccaagtttttgggtgaattatacaattacagaatggtggaatcggcagtaatcttt
cggacattgtattcctttatatcctttggagtaaatcctgatggttcagccagtccactg
gacccaccagagcatctcttccgaattcgtctagtttgcacagtcttggatacatgtggg
cagtattttgacagaggatcaagcaagagaaaacttgattgttttcttatttatttccag
cgttatatctggtggaaaaagagtctggatgtctggaccaaggatcatcctttccctata
gatattgactatatgataagtgatactctagagctgctaagaccaaaaatgaaactctgc
tgttctctggaggatgctgttagacaagtagcagaactagagcgagaatttttggttaaa
ttaggtctaactaacgacaaagactctaaagacccaagcaacctaggtgaaggtgaaaat
atagatgatgacgatgatgatgatgatgagggaggtgctgagacagaggaacaatctgga
aatgagagtgaaatgaatgatcctgaagaagaggaagcctcagaaaatgaggaagaggag
ggagaggaggaagaagaggaaaatacagattacatgactgactcaaataaagaaaatgaa
actgatgaagaaaatactgaggtgacgattaagggtggtggtcttaagcatatagcttgt
gctgaagatgaagaatttatacaggccttggataagatgatgctggaaaacctgcagcaa
agaagtggtgaatctgtcaaagttcatcaactggatgtagccattcccctgcagctgaaa
agtcagttgaggaaaggacctccacctgcttgtgtaggcgatgacaatgaaattgtggac
accatgcagtttgtcatgttaactcggaaaggcaataagcagcagtttaagatcttaaat
gttccattgtcttcccatcttgctgcaaatcactttaatcagcagcaagcagaacaagag
gagagaatgcgcatgaagaaactaacactggatattaatgaacgacaggaacaggaggat
tatcaggaaatgatgcaatcccttgctcagcgtcctgcccctgctaatacaaatcgtgaa
agacggccgcgataccagcaccctaaaggagcaccaaatgctgacttaatcttcaagact
ggagggaggcgacgctga
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