Polypterus senegalus (gray bichir): 120534251
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Entry
120534251 CDS
T08668
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psex03009
]
120534251 (utp20)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120534251 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
PI-TkoII_IV
Motif
Other DBs
NCBI-GeneID:
120534251
NCBI-ProteinID:
XP_039617620
LinkDB
All DBs
Position
8:117755327..117909711
Genome browser
AA seq
2781 aa
AA seq
DB search
MKTKSSHHKSENTFRFLTFSERLANVNIDVVHRIDRTGSFSEEVETYFFESLKKWRDLNL
TEHFVTFFKEVVTKCQSFNQLVFHQNAIVESLKTHLQVKRSLAYQPLLDLVVQLARDLQT
DFYPHFKDFFLIITSLLDTQDTELLEWAFTSLSYLYKYLWRLMIKDMPEIYSLYSKLLAH
KKEHIRNFAAESFAFLMRKVSDFHALFNLMFLDLDTHKEKAEGVGQLLFEMCKGVRHMFH
SCTCKAFKIALQKLGPVTEKEVQLPWPAVGKALDHMARSAASYVYKENFTVLWDCLQVSA
LEILQEVHESPSECSEQLERLLCIYEILVKHSQGLKVSDPKQLCKVIIQVVQSPHYSLHC
TQKLFQVISSFLLGENISLPESLIEETLQKIFTSGMDCELVLPFSVKMFEMKQFEQLFLP
SFLRYLEQILCTDDQITQQHVLQVLVKLILIKAEPPTDGSMAFEKYPLFFTGKIAGMDMK
KYKNLNSIVPVLDYFLSLIEVPKDNTLVELSHAWASLVVLPHIRPIDADRTLPLLTSLID
HLLHAVGSKVMGRGALFVARQALSTLLSFKESSEILNLVPLDQVKNIVRQFPSDQSSLLF
ADLYYTRLALNGCIEHLSQEAMLDLYDVLRHNLALNKTKVRLLTLRILNHFCINLPKTEE
IDGYGEPQTVFAICLQAELVPATVHDYREKLLHLHKLRHDLIQPSVPKGHLQEVPLCYLI
GMLYINFSPLWDPVLQLIASHAREMDNKEFWKVFYLHLNNAALLAEKDQPEEKGVSNFKT
AQDHSNLRCGVISVLYLDNFKLVTDDKERTDFTNFRCLLWKAMLQFPERVEPRSRELSPL
LLRFINNEYYPADLMVAPTQNLRKKSDKDHEDNIKMDEENDSDDDTECPGRKRTRRAASK
QLIAHLKVFSKFANPRALYLESKLKELYTELLCHQYQDVQKIALECIMTYKDPHIMPYND
HLERLLDDKHFKEVIVHFNISEENSIVKSSDRAHLMPILMRILYGRMRSKTGSKTQGKSG
AGTRMSIVMRFLAGSLPEELGLFIDLLFEPVKNYSKEACLTAVQTAMAQVDLSRVLPLGR
QHSLLHSIEIVIQKLGHLISQYLPKILQIILCITGSISVVLDQRDKIQAGCISPFKNLRR
LGILRVQQFFDGFESYSFTSEEIDAVFQAVIWPQISRLPSESCYSPTPVLKLIHVWSTNS
RYFPLLGKQKIGEPTCDILFNVFALLSAKKVTQSTINVVIDIAELLLTTPDFEPTDSVMA
LPVNNCIIPEDTLAAVPNAPDGLSLGSRLILPHVSSILQYLSNVVGNAERMKKKKFRAEV
SKELNILSKISKFVQEKEQSSVLIFLLLPYLYKTNNTPDTEIDILETIQNLLKQCIKPTS
FLKPLAKLFSVIQNKLSRQMLCTVFQCLSDLDERLKYITDIAIKLNAFDSRHLDEINFDE
RLIAFQFIMDYIKKMNSLDTDYLITIMQNCFYSIQLGDMSLSDTATLCLMTIIKQVALIE
HTKEEYQEIILKTLVASVKKGLRCKTESIQQEYTTVLSCLIQTFPADSEFKELVQLTNYS
DPESDFFEHMKHIQIHRRARALRKFAKQLTEGDLFLSSKSLQNYIMPYSMTALFDGKMFK
HENMMSASVEVIGAICKQLPWSKYIYYLKLFVHVLQTRQIDQKLAVSLLVAVLDAFHFDS
KTLSKCLEAPKKELNEACVMDDNAEEEGEEMELEESEEEVDMDIPEDSSKEINIEGEAKE
VLSSNKNNTTTNHSNNTFLGMPRNKQELENLIQHIQGTVSNTILPRLHKCLSAKGKRESE
HKLAKSKEVDEEQLARIPIAFAMVKLMQSLPQEVMEANLPSILLKICILLRNRFQEIRDA
ARNALIKIIETLGCQYLQYLLAEMKTVLVKGYQVHVLTYTVYLLLETLSNTLNSGDLDSC
MDMLISIFNRELFGDIAEEKEVKGIVSKVMEARRSKSYDSYEILAQFIGKGQVSQLIIPL
KEVLENTTSLKVARKVHETLRRIVAGLLLNKEMAANSILLLSYGLVSESLPLLTEKTKEK
TIQQPALDPRLQPKSCLLLPPTPTRDGQKAAISYRTNMHILVDTGLRLLHMSLKRSKVNS
SESDVLEMLDPFVTLLIDCLNSMHVKVITESLQCFTWILKFPLPSVGNNIDQLTKQLFVL
LKDYAKAGAAKGDNFHLVVNCFKCITMLVRNNERCKISDKQLQVLLGYAEEDIYDQSRQA
TAFGLLKAIVSKKLIVPEMEDVMKKVSKLSITGPSDLIRVQCRQIYMKYILDYPLGKKLR
AHLEFIVSQLSYEYETGRESALELLTSIFQTFPQALLHEYYGLFFIPLSLMMVNDDSPKC
KKMAALSTKSLLEKVGSEHQDAMYGIVKSWLDSEKVPHRRLGAQACGLFVELEGVRFERR
LQSLLPLIEREIDPSKFEDIDDEVKEKAADRLLVVLLTLITKLIRECNLLQLSKQDVTFD
NILRHIHSHLWFPHTWVWLTASQIFGLLFAAHNPEELVKKYSEYQTNPSKKMASELPATQ
FLLRDLEKKIKEMTLAFCHQLQSKFLDQSSGEQVIRNLLFVAKVLYLLNPELEEQDTNSV
TTHENEEIHQEEGVNQQNETSSKPVTEENDQPASLRWLMNKLSYLAKVEAAHSPKVPLKR
TCIFKFLGAIAVDLGKDKVKPYLTAIIAPLYRELNSTYAEQDPTLKNLSQEIIELLKKIV
GLEIFSLAFAAVQKQASQKRAVRKQQKATEAVANPAVAAQKKLKKHKNKIKAKKRKIEFL
RPGYKAKRLKSHALKDLAMVE
NT seq
8346 nt
NT seq
+upstream
nt +downstream
nt
atgaagactaaatcctcacatcacaaatcagaaaacacgtttaggtttcttacgttttct
gagaggcttgcaaatgtcaacattgatgttgttcatcgcattgatagaactggaagtttc
agtgaggaagttgaaacttacttttttgaaagcctgaaaaaatggagagatttgaatcta
acagaacattttgtgacattttttaaggaggttgtcactaaatgccagtcattcaaccag
ctagtttttcatcagaatgcaattgttgagagtttgaagacccatcttcaagttaaacgg
agccttgcctaccagccacttttggacctagtggtgcagctggcccgagatcttcaaact
gatttttaccctcactttaaagatttctttttgattatcacctctcttttggacactcaa
gacacagagctgttagaatgggctttcaccagtttgtcgtatctttacaagtatttatgg
aggctaatgatcaaagatatgcctgagatatacagtttatacagcaagctgctagcccac
aaaaaagagcacatacgaaactttgccgctgaaagttttgctttcttgatgagaaaggta
tctgattttcatgccctctttaacttaatgttccttgatttggatacgcataaagaaaaa
gcagaaggtgttggacaattattgtttgaaatgtgcaaaggtgtgaggcacatgttccat
tcctgcacttgcaaggctttcaaaattgctttgcaaaaattgggacctgtaacggagaaa
gaggttcaattaccttggcctgccgtaggaaaagcccttgaccatatggcaagatctgca
gcatcttacgtttacaaagaaaatttcactgtcctttgggattgtttgcaggtttctgct
ttagagatcttacaagaagtacatgagagtccttcagaatgttcagagcaattagaaagg
cttttgtgtatatatgaaatccttgtgaaacacagtcaaggtttaaaagtttcagatcct
aaacagctttgcaaggtaataattcaagtggtacagagtccacactattctctacattgt
actcagaaactcttccaggttatctcctctttccttctgggtgaaaatatctcccttcct
gaaagtttaattgaggaaacacttcaaaagatttttacaagtggaatggactgtgagctg
gttttgccattttctgtaaagatgtttgaaatgaaacagtttgaacagctgtttcttccc
agtttcttgcgctatttggagcagattctatgtacagatgaccaaatcacccaacaacac
gtattgcaggtgcttgttaagttaattctgatcaaagcagagcctccaactgatggatca
atggcctttgaaaaataccctttattttttactgggaaaatagcagggatggatatgaag
aaatacaaaaatctaaattccattgtacctgttttggattactttttatctttaattgaa
gtaccgaaggataacactcttgttgaactgtcacacgcatgggcttccctggtagttctt
ccacatatcaggccaattgatgcagaccgaacattgcctcttcttacctcgttaattgat
catctattacatgctgttggtagcaaagttatggggagaggagctctttttgtagcccgt
caagctttaagcactcttctgagctttaaggaatcttcagaaattcttaatcttgtgcca
ctagatcaagtaaagaatattgtaaggcagtttccatcagaccagtcttctcttttgttt
gctgacttatattatacaagactggcactaaatggatgcatagaacacctctctcaagaa
gcaatgctcgatttgtatgatgtactacgtcacaatctcgcattaaataaaacaaaggtc
cgcctcctgactttaagaatccttaatcacttttgtattaatctaccaaaaactgaagag
attgatggatatggggagccacagacagtgtttgccatttgtcttcaagctgaacttgta
cctgcaactgttcatgattatcgtgaaaagctactccacttacataaactgaggcatgat
ttaatacagccctctgtacctaagggacatttgcaggaggttcccttatgttatttaatt
ggaatgctctatattaacttcagcccactatgggacccagtgcttcagcttatagcttct
catgctcgagaaatggacaataaagaattttggaaagtattttacttacatttgaacaat
gctgcacttttagctgaaaaggatcaacctgaggaaaaaggagtgtcaaattttaaaact
gcgcaagatcacagcaatctgagatgtggtgtcatttctgtgctttaccttgataatttc
aagttagtcacagatgacaaagaaagaactgattttacaaattttagatgtctactatgg
aaggcaatgctccaattccctgaaagagtggaacctcgatcaagagaactgtcgcctcta
ctactgaggtttattaacaatgaatattacccagctgacctcatggtagcaccaacacag
aatttaagaaaaaaaagtgataaggaccatgaagataacattaaaatggatgaagaaaat
gattcagatgatgacacagaatgtcctgggagaaaaagaacaaggagggcagcatcaaaa
cagctgattgctcatctgaaagtgttttcaaagtttgcaaatcctcgggcactctattta
gaatcaaaactgaaagagttgtacactgagctgctttgccatcagtatcaagatgttcag
aaaattgctttggaatgtataatgacttacaaggatccacacattatgccttacaatgac
cacttggagcgacttttggatgataaacattttaaagaagttattgtccattttaatatt
tctgaggaaaattctattgtaaaatcttcagatagggctcatcttatgcctattttaatg
agaattctttatgggcgcatgagaagtaaaactggaagtaaaacacagggaaaatcaggc
gctggaacaagaatgtcaattgtaatgcgttttttagctggttccttacctgaagaactt
ggattatttattgacctgctttttgagcctgtgaaaaattacagtaaagaagcttgcctt
actgctgtgcaaactgcaatggcccaggttgatctttccagagtcctgccattgggtcgt
cagcatagccttcttcatagtattgagattgtaatccagaaactggggcatttgattagt
cagtatctgccaaagattctacagataatcctgtgtattacaggttcaatttctgttgtg
ttggaccaaagggacaaaatacaagcaggatgcattagcccatttaagaacttgcggcgt
cttggaattcttcgagttcaacaattctttgatgggtttgaatcttacagcttcacttct
gaagaaattgatgctgtgtttcaagcagtgatttggccgcagataagccgtctaccttct
gagagctgctattctccaactccagtactgaagctaattcatgtgtggagtacaaattct
cgatattttcctcttcttgggaagcagaagattggagaaccgacctgtgacattttgttc
aatgtctttgctttgctgtctgcaaaaaaagtaactcagtccaccatcaatgttgttatc
gacattgctgaactcctccttactacaccagattttgagcccacggattcagttatggca
ctgccagtgaataactgtataattccagaagatacattggctgctgtacctaatgcacca
gatggccttagccttggttctagacttattcttccacatgtgtcttccattcttcagtac
ctgagcaatgtggtaggaaatgctgagaggatgaagaagaaaaaattcagggctgaagtt
agcaaagagcttaacatcctttcaaaaatcagcaaatttgtgcaagaaaaagaacagagt
tcagtacttattttcctgttgttgccatacctttacaaaaccaacaatactccggatact
gagattgatatcttggagactatacaaaacttgctgaagcaatgtatcaaacctacctct
ttcttgaaacctctagccaaactcttctctgttattcagaacaaactttctcggcagatg
ctttgcacagtgtttcagtgtttaagtgatctggatgaaaggctgaaatacatcacagat
attgcaatcaagctaaatgcttttgacagcagacacctagatgaaataaattttgatgaa
cgtttaatagcttttcagttcattatggattacatcaaaaagatgaactccttggataca
gattatctcattactataatgcaaaactgtttctattctatacagttgggggatatgtct
ctcagtgacactgcaacattgtgcttaatgacaataatcaagcaagttgctttgattgag
cacacaaaagaagaataccaagaaattattttgaaaacattggtggcttcagtaaagaaa
ggacttcggtgtaagactgagagcattcaacaggaatacaccacagtactttcctgtctg
attcagacatttcctgcagactcagagtttaaggagctggtgcagttgactaattacagt
gaccctgaatcagatttctttgaacatatgaaacatatacagatccatcgacgagctcgt
gcattaagaaaatttgccaagcagcttacagaaggagatcttttcttgtcttcaaaatca
cttcagaactacattatgccatattcaatgacagctctgttcgatgggaaaatgtttaag
catgagaatatgatgtctgcttctgtggaggtgattggagctatatgcaagcagctaccc
tggtccaaatacatatattacttgaaattgtttgtgcacgttttacagacaagacaaatt
gatcagaaattggctgtcagtttactagtggctgttttagatgctttccattttgacagt
aaaactctttcaaaatgtcttgaagcaccaaagaaggaattaaatgaagcttgtgtaatg
gatgataatgcagaagaggaaggtgaagagatggagctagaggaaagtgaagaggaggtg
gatatggatattcctgaagatagttctaaagaaataaatatagaaggagaagcaaaggaa
gtgttgtcttcaaataaaaataatacaaccacaaatcattctaataacacctttttggga
atgcccagaaataaacaagaactggaaaatctaatccagcacatccaaggcactgtgtca
aacaccatcttgcctcgattacacaagtgcctctctgcaaagggaaagcgagagagtgaa
cataaattagcaaaatccaaagaagtggatgaagaacaacttgctcgaattcctattgca
tttgccatggtcaagttaatgcagtcccttccacaagaagtcatggaagcaaacttacca
agtattttgctgaaaatttgcatccttcttcgaaaccgctttcaagaaattagagatgct
gctcgcaatgcactaataaaaatcatcgaaactttgggatgtcagtacctccaatatctg
ttagcagaaatgaagactgtcttagtcaaaggttatcaggttcatgttttgacatataca
gtttacctgctgttagagactctcagtaacactcttaatagtggagatctggattcttgt
atggacatgttaatttcgatctttaatcgagaactgttcggtgatattgcagaagaaaag
gaagtaaaagggattgtttctaaagtaatggaagccagacgaagcaaaagttatgattct
tatgaaatacttgctcaatttattggaaagggtcaagtgtctcagctaattataccactg
aaagaggttcttgaaaatactacaagcttaaaagttgcccgtaaagtccatgaaactctg
cgacgtattgtagctggtctgctacttaataaggaaatggccgcaaactcaatccttttg
ctaagttatgggcttgtcagtgaaagtttaccactccttacagagaaaaccaaagaaaag
actatacagcagcctgcattagatccaagacttcaaccgaaaagctgcctcctgcttcca
ccaactcccaccagagatggtcagaaagctgcaattagctacagaactaatatgcacatc
ttggtggacacaggtcttagacttttgcatatgagtttaaaaaggtccaaagtcaattct
tctgaaagtgatgtgttggaaatgcttgatccttttgtaacgcttctgattgactgcctg
aactccatgcatgtcaaggtgattactgaatccttgcaatgctttacatggattctgaag
tttcctctaccttctgttggaaataacatagatcagctgacaaagcaattgtttgtttta
cttaaagactatgcaaaagcaggagcagctaaaggagataacttccatcttgttgtcaac
tgcttcaagtgtataacaatgcttgtgagaaataatgagagatgcaaaatctcagacaag
cagttgcaggtcttgctgggatatgcagaagaggatatatatgatcagtcgagacaagcc
acagcttttggcctcctcaaggctattgtttctaaaaaattaattgttcctgaaatggaa
gatgtcatgaaaaaagtgtctaaactttccataacaggaccaagtgacctaattcgggtt
cagtgtcgacagatttatatgaagtacatcctagattatcccttagggaagaaactgcga
gcacacttagaattcatagtttcccagctaagctatgaatatgaaactggaagagaatca
gcgttagaactactaaccagcatttttcaaacctttcctcaggctctgctacatgaatat
tatggcttgttctttattccactatcacttatgatggtaaatgacgactctccaaagtgt
aaaaagatggcagcgctatcaacaaaatcactcctggaaaaagtcggttcggaacatcaa
gatgccatgtatggaatagtaaagtcatggcttgacagtgaaaaggttcctcacaggaga
ttgggagcccaggcttgtggcctttttgtggaattagaaggtgtgcgttttgagagacgt
cttcaatcacttctcccattaattgagagagaaattgacccttcaaaatttgaagatatt
gatgatgaagttaaggaaaaagccgctgacagacttctggttgttctgttaactttgatt
acaaaactaataagagagtgcaaccttttgcagctgtctaagcaggatgtaacatttgat
aacattttgcggcacattcattctcatttgtggtttccccacacttgggtatggttgact
gcatcacagatttttggtttgctgtttgctgcacacaatccagaagaactagttaaaaag
tacagtgaataccaaacaaatccaagtaagaagatggcaagtgaactaccagcaacacag
ttcttactccgtgatttggaaaaaaagattaaagaaatgacactagctttttgccatcaa
ctgcagtctaaatttttggatcagtcttcaggagagcaggtcatcagaaacttgctcttt
gttgcgaaagttctttatctactgaaccctgaattagaagaacaggacactaacagtgtt
actacacatgagaatgaagagatacaccaggaagagggagtaaatcagcaaaacgaaaca
agttcaaaacctgtgacagaggagaatgaccagcctgcttcactaaggtggctcatgaac
aagctttcttacttggcaaaggtggaggcagcccacagtcctaaagtgcctttaaagaga
acctgcattttcaagttccttggagcaattgcagttgatcttggaaaggacaaagtaaag
ccttacctgaccgcaatcattgcacccctttatagggagctcaacagtacttacgcagaa
caagatccaactttgaaaaacctttcccaagaaataattgagctgctgaagaagattgtt
ggccttgagattttctccctggcatttgctgcagttcagaaacaagccagccagaaaaga
gcagttagaaaacagcaaaaagctacagaggcagttgctaaccctgcagttgctgcacag
aaaaaattaaagaagcataaaaataaaatcaaagccaaaaaacggaaaattgagttcctg
cgtcccggatacaaagctaagaggttgaaaagtcatgcattgaaggatctggccatggtg
gagtga
DBGET
integrated database retrieval system
