Polypterus senegalus (gray bichir): 120535096
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Entry
120535096 CDS
T08668
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04136
Autophagy - other
psex04140
Autophagy - animal
psex04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120535096 (atg16l1)
04136 Autophagy - other
120535096 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120535096 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120535096 (atg16l1)
03029 Mitochondrial biogenesis [BR:
psex03029
]
120535096 (atg16l1)
Membrane trafficking [BR:
psex04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120535096 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
120535096 (atg16l1)
Mitochondrial biogenesis [BR:
psex03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120535096 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
eIF2A
WD40_RFWD3
Ge1_WD40
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
KASH_CCD
APEH_N
DUF4200
HEF_HK
Beta-prop_Vps41
PQQ_3
DASH_Dam1
CCDC93_CC
Cauli_AT
NPV_P10
GIT_CC
Motif
Other DBs
NCBI-GeneID:
120535096
NCBI-ProteinID:
XP_039618610
LinkDB
All DBs
Position
1:complement(168903555..168976221)
Genome browser
AA seq
622 aa
AA seq
DB search
MFGAACQAERTWKRHIAEQLKRRDRLQRQAFEEIIQQYNRLLEKSDLQAVLSERLQAEKF
DSQNRHDISPSCDGTRSEALLQEIAQLKIRHQEELTELHKKRGELAQSVIELNNQMQLKD
KEIQANELKIMEFQQRISELQNECKELQSNLQDLEQANQTLKDEYDALQITFSALEEKLR
RTTEDNQELITRWMAEKAQEANRLNAENEKDCRRRQAKLQKELADAAKEPLPLDQDDDIE
VLAEEAPEQAGETSPSRTVTRTPSKRASQPQLGLLDSLSNIFGLAESPVLGHHLPDNTRR
LSVNSYGGTPADSEVQVGVCTEVRLPSTALHVFDAHDGEVNAVRFSPGSRLMATGGMDRR
VKLWETISGRCELKGSLMGSNAGITSIEFDSAGTHLLAASNDFASRIWTVDDYRLRHTLT
GHSGKVLSARFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSG
HFDKKIRYWDIRSECIVRELELLGRVTSLDLNPDRTELLTCSRDDLLKIIDLRMNTVKQT
FTVQGFKCGSDWTRVTFSPDGGYVAAGSADGTLYVWNVLTGKVEKVLGKHHSSCVNAVAW
SPSGAYVVSVEKGNKAVLWSDL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggcagcatgccaggcagagcgcacctggaagcggcacattgcagaacagctg
aaacggagagacaggctacagagacaagcttttgaagaaatcattcagcagtataaccgg
ctgttggagaagtctgacctacaggccgttttatctgaaagactacaggcagagaaattt
gattcccagaacagacatgacatcagtccaagctgtgatggtacacgaagtgaggcctta
ctacaggagattgcccagcttaaaatccgacatcaagaagagctcactgagttgcacaag
aagcgtggggagcttgcccagagtgtcatagaattgaataatcaaatgcagctaaaggat
aaagagatccaggccaatgaactgaagataatggaattccagcagagaatctctgaactg
cagaatgagtgcaaggagcttcagtccaatttgcaggacctagaacaggccaaccaaacg
ctgaaagatgagtatgatgctcttcagatcactttcagtgctctggaagagaaattacgg
cgtacaaccgaagataatcaggagcttattactcggtggatggcagagaaagcccaggaa
gccaacagacttaatgcagaaaatgagaaggactgcaggcggagacaggcaaagctgcag
aaggagttggctgatgcagctaaagagccactaccactggaccaggatgatgacatcgag
gtgctagcagaagaggcccctgaacaggctggagagacgtcgccatccagaactgtaaca
cgcacacctagtaaacgagcctcacagccacaattaggacttttggactctctgtctaat
atatttggccttgctgagtctccagtccttggacatcatcttcctgataatacaagacgt
ctctctgtgaactcgtatgggggcacaccagctgactcggaggttcaagtgggtgtgtgc
actgaagtacgccttccgtccacagcacttcatgtttttgatgcccacgatggagaggtg
aatgcagtaagattcagtcctggctcacgcttaatggcgacaggaggtatggaccgaaga
gtaaaactctgggagacgatttcaggtcgatgtgagctcaaaggatctctaatgggcagc
aatgcaggaatcaccagcatagaatttgatagtgcgggcacccacttacttgctgcctca
aatgactttgctagcaggatatggacagttgatgactaccgattacggcatacgcttact
ggacacagtgggaaggttctctctgctcgcttcttgctggacaatgcccgtattgtgtct
ggcagccatgatcgaactcttaaactgtgggatcttcgcagcaaagtctgtataaagacc
gtgtttgctggatccagctgcaatgatatagtttgcacagagcagtgtgtgatgagtggc
cactttgataagaaaatccgttactgggatatcaggtcagaatgcattgtacgggagctg
gagctgcttggcagggtcacatcacttgacttgaatccagataggacagagctacttacc
tgttctagggatgatctgttaaaaattattgacctgcggatgaacaccgtgaagcaaaca
ttcactgttcaaggtttcaaatgtggctctgactggacaagagtgacatttagccctgat
ggtggttatgtagcagcaggttctgctgatgggacgttgtatgtatggaatgttctgaca
ggaaaagtggagaaggtattaggaaaacaccacagctcatgtgtcaatgctgtagcctgg
tctccatcaggggcgtacgtagtcagtgtggaaaagggtaataaagcagtactgtggtca
gatctttaa
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integrated database retrieval system
