Polypterus senegalus (gray bichir): 120535160
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Entry
120535160 CDS
T08668
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psex03000
]
120535160 (rc3h2)
04121 Ubiquitin system [BR:
psex04121
]
120535160 (rc3h2)
Transcription factors [BR:
psex03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120535160 (rc3h2)
Ubiquitin system [BR:
psex04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120535160 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
Prok-RING_4
zf-CCCH_4
zf-C3HC4
zf-C3HC4_4
zf-CCCH_UNK
zf-C3HC4_2
zf_CCCH_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
120535160
NCBI-ProteinID:
XP_039618725
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Position
9:complement(28559154..28645578)
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AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDQQTVNLSNVAESKHYEVSKKCIEELALYLKPISGGKGIAS
LNQSALSRPMQRKLVTLVNCQMVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DHNPDAELPTWEQLENVMVAVKTVVHGLVDFIQNFSKKSHETPQPQPNSKYKTSMCRDLR
QQGGCPRGGNCTFAHSQEELEKYRMRNKKISTSVRPFPLSQPSFLNKPGINDNASSTAGT
VISIMGNSENMVNMIRSTNGVAHTECSAPQLISRGPDPPLEELKKLTRAGSNGLTASGCL
SQSPSENSPPKTPVNSTVTTSIISSSTAVDVNSVLPKSAQFVSRPSLYPPTPSEMHCPDL
RAPVSYDMPPYPPNNYYAPPPPPPLPPPTVSAAQCVTRFVRSSNVPESSLPPSSVPYSDQ
YGPFPPRERLTPTPYPPPPPPAQYGPPPVHYASRRLWRPQLYHRDDIRSNSLPPMDVMHS
SLCQQPPLRERYSSLDGYYSVANHVPSDQRTVTLQRDSYNRIQMGYEEQFRRKTDQWTVY
HSQKPPPLVTPSHPPASQSPSRSSPLFDMEFSSEFPEGSSDFVCSKLKEDGHLSQYSPWS
CGTISTCIHANHAEPTDVVTSSNMELTDHGSCDIKKQMHLFEYQRKGKDEDPIIPFGEGP
IISKWGAISRSSRTGYHTTDPVQATASQGSGTKPINFRDYGPYIHHGDSKWSSYGSDSSS
SSSYLERNHLESSNITTQIKTYGNGEHLSVELQQAKSNSLLLQREANALATQHKWTSLDD
DDDIDDDEEEEEDVEKHLSFGLLNKEITVENEQSVYTEDSVDEKSNQDIELELSALSCDD
PDSHKKEILCVSTCKNELSNGTGNGDQMKQNNKSSTNKLGNRLLKQIAPNKKKKVSLVNS
SCVHKTATSTNGVNSASSVMISHLVAKSAALGNPEDPSQCISNGENLLNRS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaggcagctcaatggacagaatttttgtcttgtcctatttgctacaatgaa
tttgatgagaatgtgcacaagccgatcagtcttggatgttcacatactgtctgcaagacc
tgcctcaacaagttacaccgcaaggcatgcccgtttgatcagactgccatcaacactgac
attgatgtacttcctgttaacttcgctcttctccagctagttggtgcacaggttcccgac
caacagacagtaaacttgagtaatgtggctgaaagtaaacattatgaggtatcaaagaaa
tgcattgaggaactggctctctacctgaagcccatcagtggagggaaaggtattgcaagc
ttgaaccaaagtgcattaagtcgaccaatgcagagaaaactggtgacactagtgaactgt
cagatggtggaagaagagggtcgtgtccgggcaatgagagctgcccgatctctcggagag
aggactgtaactgaacttatactacagcatcagaatcctcagcaactttctgctaatctt
tgggctgctgttagagcccgtggttgtcaatttctgggacctgccatgcaggaagatgct
ttaaagctagttctgcttgcactggaagatggttctgccctttctagaaaagtgttggtc
ttatttgttgtacagaaattggaagccagatttccacaggcatctaaaacaagcatcggg
catgttgtacagcttctgtacagagcgtcctgcttcaaggtcactaaaagggatgaagat
tcctcacttatgcagctcaaagaggagtttcgaacgtatgaagcattacgcagggaacat
gatgcacaaattgtccatattgcaatggaagcagggcttcgcatttcaccagagcaatgg
tcctctttgctgtatggagatttggcacacaagtcacacatgcagtctattattgacaaa
cttcagtctccagaatcctttgcaaagagtgttcaggaacttacaattgtactgcaaaga
actggggatccagcaaatttaaaccgattaagacctcatttggagcttttagcaaatatt
gatcataatccagatgcagagctcccaacatgggaacaactggaaaatgttatggtggca
gtgaagactgttgtacatggtcttgtggattttatacagaatttcagtaaaaagagtcat
gaaacaccccagccccagccaaacagcaaatacaaaaccagtatgtgtcgagatctgaga
cagcaaggtggttgccctcgtggaggaaattgcacatttgctcattctcaggaagaacta
gaaaaatacagaatgagaaataaaaaaatcagtacctctgtgaggccattcccactgtca
cagccatcttttctcaacaagcctggaataaatgacaatgcaagttctacagcagggaca
gtaatttctattatgggaaactctgaaaatatggtaaacatgatccgcagcaccaatgga
gttgcgcataccgagtgtagtgcaccccagcttatttcccgagggccagatcctcctcta
gaagagttaaagaagctcactagggctggatccaatggtctgactgcatctggttgcctg
tcacagtcaccttctgagaactcacctccgaagactcctgtaaactccactgtaactacc
tcaataatcagttcttctactgcagtggatgtaaattcagtacttccaaaatccgcacag
tttgtatcaagaccatctttatatcctcctactccatctgagatgcattgtccagacctg
cgtgcaccagtgtcctatgatatgccaccatacccaccaaataattattacgctcctcct
ccaccacctcctctgccccctcctactgtttcagctgctcagtgtgtcacacgctttgtt
cgttcaagtaatgtgcctgaatcatctcttccgccatcatcagtaccctattcagaccag
tatggtcctttccctccaagagaacgtttgacccctactccgtatccacctcctccacct
ccagcacagtatggccccccgcctgtgcactatgccagtagacgcttgtggagacctcag
ttgtaccacagagatgatattaggagtaactcattgcctccaatggatgtaatgcattct
tcattatgtcagcagcctcccctaagagaacgatacagctcactagatggatactattct
gtagcaaatcatgtacccagtgaccagaggacagtaactttgcaaagggactcttacaat
cgaatccaaatgggatatgaagagcagtttagacgaaaaacagaccagtggactgtatac
cattctcagaagcccccacctcttgtaactccatctcatccacctgcttcacagtctcca
tctcgttcatccccactatttgatatggaattcagttctgagtttccagaaggctctagt
gactttgtatgctctaaattaaaagaggatggccacctttcccagtattcaccatggtct
tgtggtaccatcagcacctgcatccatgcaaatcatgcggaacccacagatgtagtgaca
agttccaacatggaactaacggaccatggcagctgtgacattaaaaaacagatgcacctg
tttgaatatcaaagaaaagggaaagatgaagatccaattattccttttggtgaaggcccc
atcatctccaagtggggtgcaatttcaaggtcgtcacgtacaggctaccatacaacagac
cctgtgcaagcaactgcttcccaaggaagtggcactaaaccaatcaatttcagagactat
ggtccatatattcatcatggagattcaaagtggagctcatatggatcagactcatcgagt
tcttcaagttatctggaaaggaatcacttagagtcttctaatattacaactcaaattaag
acttacggtaatggagagcacttaagtgtggaacttcagcaggcaaaaagcaattcactg
ttacttcaaagagaagcaaatgctttggccacccagcataagtggacatcattagatgat
gatgatgacattgatgacgatgaagaagaggaggaagatgtagaaaaacatctttccttt
ggtcttctgaacaaagaaataactgttgaaaatgaacagtcagtgtatactgaagattca
gtagatgagaagtcaaatcaagatattgaacttgagctttcagctcttagttgtgatgac
ccagattctcacaaaaaggagattctttgtgtcagtacttgcaaaaatgagctctcgaat
ggaactgggaatggagaccagatgaagcaaaacaacaaatcttccaccaataagttgggg
aatcgtctattaaagcagattgcccctaataaaaaaaaaaaagtgagcctggtcaacagt
tcatgcgtccacaagactgcaacttctacaaatggagtgaactcagcttcttcagttatg
atcagccatttggtggcgaaatcagcagcacttgggaacccagaggatccatcgcaatgc
atatccaatggggagaaccttctgaacagaagttaa
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