Polypterus senegalus (gray bichir): 120535213
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Entry
120535213 CDS
T08668
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psex03036
]
120535213 (chd9)
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120535213 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
CHDCT2
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
120535213
NCBI-ProteinID:
XP_039618826
LinkDB
All DBs
Position
9:34864583..35141871
Genome browser
AA seq
2881 aa
AA seq
DB search
MDLFDDPILYTRGMEALSDDSFVLSGSSLLVDDLNLNAEFEPLQVEPLDHVKQTGNVSTS
QPILGFEQHVSPFESLKETHPLDHAFSIGVENGSVLTPPCSQHAPSPSHQSSQSNGLFPG
ASNSSPMWGHHHENGTEFHQHSGVSHSMQQHNKSFTEHQNFGLFQTASLQQSHHPTHPMP
PTPVSQENINQSKLFMDVNSTSSMTNVHRTGTMSSHLGSHHSATSHQLCNLASNLQLPYQ
RPSSTLSLPSCSVNQNSHFQNSPSSYTYSGNTCVNNEKVLSTGSFSNTVQAPVSDFLEES
DSFLLLAGARQGPAEQHQQVTQNPVCENSFHAKNTQGGFARTRNPTEELSCFQTALRRSS
EQFGSSQPTSDPAPNSGFSELEENLLQQMDTPSMPFGDLDPDDLLEGSLLPQFETTFGHE
NPCASMESHPCDNAWPDVNDSAPCFKQQPPTSKNTNDSGMPAKPYSAKVKSNTSTMSEKK
QKKKVSMEVLVEDKQEKANRIISEAIAKARERGEKNIPRVMSPESFPTSSTEVCQERKVR
KLKNKPKEKLLKKSKGGPSSKAKQKSKIGKIVIKFGKKKKRKNESSDEVSDTEPISHRSA
KDEDVTRRSNRQVKRKKYAEDGESKISDDEVKVSNKTKKLTATTTTTTPSSRTEQPLQLF
VENPSEEDAAVVDKIMSSRIVKKEVSPGVMAEIEEFYVKYKNYSYLHCEWATEEQLLKDK
RIQQKIKRFKMKQAQRAHFFADMEEDPFNPDYTEVDRVLEVSYCEDSDTGEPIIYYLVKW
CSLPYEDSTWELKEDVDQSKIEEFELLQTAQPDTRRIERPPANMWKKIERSREYRNSNRL
RDYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLEEIYLTGVRGPFLIIAPLSTI
ANWEREFRTWTDLNVIVYHGSMVSRQMLQQYEMYFRDSQGRIIRGAYKFQAIITTFEMIL
GGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKVLLTGTPLQNTVEELFSLL
HFLEPVRFPSESTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEV
ELTNIQKKYYRAILEKNFSFLTKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILEE
FKDTYSPASTDFHLQAMIQSAGKLVLIDKLLPKMKDGGHKVLIFSQMVRCLDILEDYLIQ
RRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW
NPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRENS
VGGQIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQILQRRTKTITIESEGRGS
TFAKASFVASGNRTDIALDDPNFWDKWAKKAEIDMDAINGRNSLVIDTPRVRKQTRPFSA
TKDELAELSEAESEGDDKPKLRRPYDRLNGYGRTECFRVEKNLLVYGWGRWKDILVHGRF
KRQLNEHDVEIICRALLSYCLVHYRGDEKIKSFMWDLIAPTEDGQTKELQNHLGLSAPVP
RGRKGKKVKNQPSTFDIQKAEWLRKHNPEHLLQDDGYKKHLKHHCNKVLLRVRMLYYLRQ
EVIGDQYQKVIDGVDHSETEVWIPELDHSELPAKWWDKDADKCLLLGVFKHGYEKYNTIR
ADPALSFLERVGKPDEKAIAAEQRACDFMDGDVDDPEYKPAPALLKDDIEDDASSPGDLV
IADSNGDAHIMEGDAMYWPPSSALTTRLRRLITTYQRNTKNRQIQQIQQVYLAQQCLQTP
VCEETITPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPEASRFDWTKFRAMARLHKK
TDESLQKYLCAFTAMCRRVCRLPPKEGEVADPSISIQPITEERASRTLYRIELLRKIREQ
VLRHPLLFERLKLCQPSPDLPVWWEPGSHDRDLLIGAAKHGVSRTDYHILRDPELCFMAA
QSNYSQNKGAQSRTSTPLLQQQHQMTLLCSPLTPQPRTTDTKGTQAEDLQSRNEGVSQDR
DSSATSEEDDGSITTAESKIAAKVWIPSGDSLQIGVKSGNDRRMVAARTKPLTPNSVAKK
QHRKRGCSGSSGSDSDSDASSSCSSRSSSSSSSSSSSCSHSGSSSSSSSSSCSSGSSSSS
SSSSSSSEDSDSEAEERNKNAEAMPRMKGFDEDSVASLSTTQDETQDSFVMDNGIPNSSP
MFHGGYMLAASFWPKDRVMINRLDSICQAILKGKWPTVRRTYDCNAVASFYTTKLLDSPT
AAANLSDSRVSTPPLPGLREDPSVSPQMLKVKKHVQQEKEFTVKINDQEGGLKLTFQKQG
LPQKRPFETDDIPMGQQQYLARLRELQSASDASLADFTKPLASPGASGQLRPNGVLEPPM
AKRRRGRRKNVEGIDLLFLNKNKASLNNVESTLQVSPSMLYCQGQGTLDMESRIPVINLK
DGTRLAGDDAPKRKDLDQWLKGHPGYVADVGAFIPGVSKMPFQDGQPKQKRHRCRNPNKI
DVNSLTGDERVQVINRRNARKVGGAFAPPLKDICRFLQENPEYGIPPEWADVVKNSGFLP
ESMFDRILTGPVVREEVSRRGRRPKSEIAKAAAAASAANTPILGVNPLLANGLLPGMDLS
SLQALQQNLQSLQSLQLTAGLMGLPAGLASGDANNLATMFPMMLSGMAGLPNLLGLGSLL
TKSSETVTSEDTKGNGANESSKLSSDMKIERTEGQSAEPCSGEPSASNSPSTSMSTSLNA
SAVAAAAVTGSHSLALNPLLISSMLYPGMLLTPGLNLPIPALSQSNLFDVQKSANSNSTP
ASVSEETVEEVKREHRAEQAETVIPTPDICADDGSDKDVSSSESQSSSSSSSDDSDSSDS
D
NT seq
8646 nt
NT seq
+upstream
nt +downstream
nt
atggacttgtttgatgatccaattttgtataccagaggcatggaggctctttcagatgac
agctttgtcctctctggctcctccttgcttgtagatgatctgaaccttaatgcagagttt
gagcccctccaggtggaacctctggatcatgtgaagcagactgggaacgtctcaacatct
cagcctatccttggctttgagcagcatgtcagtccatttgagtccctcaaggagacacac
cccctagaccatgccttctcaattggagtggagaatggaagtgtgctaacaccaccgtgt
tctcagcatgctccctccccttcacaccagtcaagtcagtcaaatggcttgtttccaggt
gcctcaaacagcagcccaatgtggggacatcaccatgagaatggaacagaatttcaccag
catagtggggtttcccattctatgcagcaacacaacaaaagtttcacagagcaccagaac
tttgggttatttcaaactgcttcattgcagcagagccaccacccgacccatcctatgcca
cctacaccagtttctcaggagaatataaaccagtccaaattgttcatggatgtaaacagc
acatcttctatgacaaatgttcaccggacaggaacgatgagcagccatcttggttctcat
cattctgccacttctcaccagctttgtaacctggcctcaaatttacagctgccttaccag
agaccatcttcaactctctccctgccttcctgctcagtgaatcagaattcccattttcag
aattcgccttccagctacacttattccggtaatacatgtgtgaacaatgagaaggtgctg
tctacaggttcattttccaacacagtgcaggctccagtttcagatttcctagaggagtcc
gactcctttcttttactggcaggagccagacagggacctgcagaacaacaccagcaggtg
acacaaaatcctgtgtgtgaaaattcttttcatgcaaaaaatactcagggaggttttgcc
agaacaagaaatcctactgaagagttgagctgctttcaaacagcattgcgacgctcctct
gagcagtttggcagttcgcaaccgacatcggaccctgcaccaaacagtggcttttctgaa
ctggaagagaacttacttcagcaaatggatactccgtctatgccttttggagaccttgat
ccagatgatcttcttgaggggagcttgctgcctcagtttgaaaccacttttggacatgaa
aacccctgcgcttctatggaatcccatccatgtgacaacgcctggccagatgttaatgac
tcggcaccttgtttcaagcaacagcctcctacctctaaaaacactaatgactctggtatg
ccggctaagccgtacagtgccaaggtgaagagcaacacctctacaatgtcagaaaaaaag
cagaagaaaaaggtatcaatggaagtactggtggaagataaacaagaaaaagcgaaccgc
ataatatcagaggcaattgccaaggcccgggaacgtggtgagaagaacattcctagggtc
atgagtcctgagagtttccctacctcctccactgaggtctgccaagaaaggaaggttcga
aagctcaaaaacaaacctaaggaaaaattgttaaagaagagcaaaggtggtccatcctct
aaagcaaagcaaaagtcaaagattgggaaaattgttattaaatttggtaagaagaagaag
cggaaaaatgagtcttcagatgaagtgtctgatacagaaccaatatcccaccgctctgcc
aaggatgaggatgtgacaaggagatcaaaccgtcaagtcaaaaggaaaaaatatgcagaa
gatggagaatccaagatttctgatgatgaggtaaaggtttcaaataaaaccaaaaagctg
acagcaacaacaacaacaacaacaccgtcttccagaactgaacagccactgcagctcttt
gtggaaaatccaagtgaagaagatgcagcagttgttgataaaatcatgtcttcaagaatt
gttaaaaaagaggtgtctcctggagtgatggcagagattgaagagttttatgtcaaatac
aaaaactactcctacctgcactgtgaatgggccactgaggagcaacttctgaaagacaag
aggatccaacaaaaaataaagcgcttcaagatgaagcaggcacaaagggctcacttcttt
gcagatatggaggaggacccgttcaatccagattacactgaagtggatcgtgtgctagag
gtctcatattgtgaagacagtgacacaggagagcccataatttattatttagtgaagtgg
tgctctttgccttatgaagatagcacatgggagctcaaggaggatgtagaccagagcaaa
attgaggaatttgaacttttgcaaacagctcaaccagacacaaggaggatagagcggccc
ccagccaatatgtggaagaaaattgagcgatccagagaatatcggaatagcaatcgactc
agggactaccagctggaaggagtaaattggcttctctttaactggtacaacaggcaaaac
tgtattcttgctgatgaaatgggtcttggaaaaactattcagtccatcacattccttgaa
gaaatttatctaactggtgtccgggggccctttctcatcatcgctccgctttctactatt
gccaactgggaacgagaatttcgcacgtggactgacctgaatgttattgtatatcatggc
agcatggtcagtcggcaaatgcttcagcagtatgaaatgtacttcagggattcacagggc
cgcattatccgtggagcctacaaattccaagccatcatcaccacattcgagatgattcta
ggtggctgtccagaattaaatgccattgaatggcgctgtgtcatcattgatgaagcacat
cggctcaaaaacaaaaactgcaaactactggagggattcaagctcatgaacctggaacac
aaggtgctgttaactgggactccattgcaaaatactgtggaagagctcttcagtctcctg
cacttccttgagccagtccgttttccttcagagtcaacattcatgcaagagtttggggac
ctgaagacagaagagcaggttcagaagctacaggccatcctaaagccaatgatgctccgg
cgcttgaaagaagatgtagaaaagaagcttgcacctaaggaggagaccattattgaggtt
gaactgaccaacattcagaagaaatattatcgggcaatcttggagaaaaacttttccttc
ctgactaaaggggctggtcaagctaatgtgcccaatcttgtcaacactatgatggagttg
cgcaaatgttgtaatcacccataccttataaagggtgctgaagagaagattttggaagag
ttcaaagatacatacagtcctgcctccactgactttcatctgcaggcaatgatccagtct
gctggaaaattagttctcattgacaagctgcttcccaagatgaaggatgggggccacaaa
gtactgattttttcccaaatggttcgatgcttggatatacttgaggactatctcatacaa
agaaggtacctctatgagcggattgatggtagagtgagaggaaacctacgccaagctgct
attgaccgctttagcaaacctgactctgaccgctttgtgttcctactctgcaccagagct
ggaggcctgggtatcaacttaactgctgctgacacatgcattatttttgattctgactgg
aacccccagaatgatctacaggctcaagcaaggtgtcaccgaattggccagaacaaagct
gtgaaagtgtacaggctaataacccggaattcctatgagagagagatgtttgaccgagca
agtcttaaattaggactggacaaagcagtgctgcagagcatgagtggtagagaaaacagt
gttggaggccagatccagcagctatccaagaaagaaattgaagacttgctgcgaagaggg
gcctatggtgcaataatggatgaagaggatgagggttcaaagttttgtgaggaagacatt
gatcagatccttcaacggcgaactaaaaccattacaattgagtcagaaggaaggggttca
acttttgcaaaagcaagttttgtggcatctggaaacagaactgatattgccctagatgat
ccaaatttctgggataagtgggctaagaaagcagagatagatatggatgctatcaatggt
agaaacagtttagtgattgacacaccaagggtgaggaagcagacacgtcccttcagtgca
acaaaagatgaattggctgaactgtctgaagcagagagtgaaggggatgacaagccaaag
cttcgtaggccatatgaccgccttaatggatacggcaggacagagtgcttcagggtggag
aagaacttgttggtctatgggtgggggcgctggaaagatatcctggtgcatggccgcttc
aagaggcaactaaacgagcatgatgtggaaattatttgccgggccctgctatcttactgc
ttagttcattacaggggcgatgaaaagattaagagctttatgtgggatctcattgctcct
acagaagatggtcagaccaaggaacttcagaatcatcttggtctttctgcaccagttccc
agaggtcgtaaagggaagaaagtcaaaaaccaaccaagcacgttcgacatccagaaagct
gaatggctgcgtaagcacaatcctgagcatctgttacaagatgacggctacaagaagcat
ctgaagcaccactgtaacaaggtgcttctcagggtgagaatgctgtactatctgaggcag
gaggtcattggagatcagtaccagaaggtcattgatggtgttgatcacagtgagactgaa
gtttggattccagagcttgatcactcggagcttcctgcaaaatggtgggataaagatgca
gacaagtgtcttctgttaggtgtctttaagcatggatatgaaaagtacaacaccattcgt
gcagatcctgctctcagcttcttggaaagagttggcaaaccagacgagaaggcaattgca
gcagaacagagggcctgtgactttatggatggagatgttgatgatcctgaatacaagcca
gccccagcgctattaaaagatgacattgaggatgatgcatcctcaccaggggacctagta
attgcagacagcaatggagatgcacacatcatggaaggagatgcaatgtattggccccct
tcttctgccttaaccacacgcctccgccgccttattaccacctatcagcgaaatacaaaa
aataggcagattcagcaaattcagcaagtctacttggcacagcagtgcctccaaacacct
gtctgtgaggagaccattacacccaagatggcagccaaaatcgaaagacagcaaaggtgg
actagaagagaagaagcagatttctaccgtgtggtatccacctttggtgtggtgtttgat
ccagaagctagcaggtttgattggactaaattcagagccatggcacggcttcacaagaag
acagatgaaagtcttcagaaatacttgtgtgcatttacagcaatgtgtcgacgggtctgt
cgtctgcctcccaaggaaggagaagttgcggacccatcgatttctattcagcccattaca
gaagagcgtgcctcacgaacactctacagaatagagctcttgcggaaaatccgtgaacag
gttttacggcatcctttactgtttgagaggctgaaactgtgccaaccaagtccggacctt
cctgtctggtgggaacctggaagccatgatcgtgaccttctgattggtgcagcaaagcat
ggagtgagccgcacagattatcacattttgagggatcctgaactttgcttcatggcagct
caaagcaactatagtcagaacaagggagctcagtctcggacttccacaccccttttacaa
cagcagcatcagatgactttactgtgctcaccacttaccccacagccaaggacaacagat
acaaaaggcactcaggcagaggacttgcagtctagaaatgaaggggttagccaagacaga
gattcttcagccacatctgaggaggatgatggttccattacaacagcagagtcaaaaatt
gcagcaaaggtctggattccttcaggggattcacttcaaataggagtaaagagcggtaat
gaccggagaatggtggctgcaaggaccaagcctctgacccccaattcagtggctaagaaa
caacaccgcaagagaggctgcagtggcagttcagggtctgactctgactcagatgcttcc
tcctcctgttcatctcggtcatcatcttcttcctcctcctcgtcttcctcatgctcccac
tctgggtcaagctcttcttcctcctcctcatcttgctcctcaggttcctcttcgtcttcc
tcctcctcatcttcctcctctgaagacagtgacagtgaagcagaggagagaaataagaat
gcagaagctatgccaagaatgaaaggttttgatgaagacagtgttgcatcactcagcacg
acgcaggacgagacacaggacagctttgtcatggacaatggaataccaaactcctctccc
atgtttcacgggggttacatgctagcagcgtcgttctggccaaaggatcgtgtcatgatc
aaccgtttggacagcatttgccaggcaatcctcaaagggaaatggccaactgtgcgaagg
acatatgattgcaacgcagtagcatccttctacactaccaagctgctggacagccccact
gcagctgctaacttaagcgactccagagtcagcacacctccactgccaggcctcagagaa
gacccgtcagtgtcgcctcagatgttaaaggtgaagaagcatgtacaacaagaaaaggag
tttacagtgaaaatcaatgaccaggaaggtgggctgaaactgactttccagaaacagggc
cttccccaaaagcgaccctttgaaactgatgatattccaatgggccagcaacagtatttg
gctcgtctgcgtgaactgcaaagtgcctcagatgccagtttggctgatttcaccaagcca
ttggcttccccaggtgcctctggtcaattgagaccaaatggagttcttgaaccacctatg
gcaaagaggagaagaggcagaaggaagaatgtagaaggaattgacttgctctttctaaat
aagaacaaggcttctttaaacaatgttgaaagtactcttcaagttagtcccagcatgtta
tactgccagggccaggggacactagatatggagagccgaatcccggtcatcaatttaaaa
gatggaacacgacttgctggagatgacgcaccaaagagaaaagatctagatcagtggctg
aaaggtcacccaggatatgtagccgatgttggggctttcatccctggtgtgagtaaaatg
ccttttcaagatgggcaacccaaacagaaaaggcatcgttgtagaaatccaaataaaatt
gatgtgaacagcctgactggagatgaacgtgttcaggtcatcaacaggagaaatgcgaga
aaggttggtggtgcttttgcaccacctctcaaagacatctgtcgatttcttcaagagaat
ccagaatatggaatcccaccagaatgggctgatgttgtaaaaaactctggtttccttcca
gaaagcatgtttgatcgcattcttacaggacctgtggttcgggaggaggtgagcagacgt
ggacggcggcccaagagtgaaattgccaaggcagcagctgcagcctcagcagcaaatacc
cccattcttggtgttaatcctcttcttgctaatggcctgcttcctggtatggacttgtct
agtcttcaggctcttcaacaaaatctgcagagtctacagtcattgcaactgacagcaggg
ctcatgggattaccagctggtcttgcctcgggggatgccaataatctggccaccatgttt
cccatgatgctgtctggcatggcaggactgcctaaccttttgggtttaggtagtctcttg
actaaatcttctgaaacagtgacctctgaggatacaaagggaaatggagccaatgagtct
tcaaagctatcatcagatatgaaaattgaaaggacagaaggtcagtcagcagaaccttgc
tcaggagagccttctgcctcaaactctccatcaacctcaatgtctacttcattaaatgct
tctgctgtggctgctgcagcagtgactggatctcactcattagctcttaatcccttattg
atatctagtatgctatatccagggatgctcctcactccaggccttaatcttcctattcca
gcattatctcagtccaatctctttgatgtgcaaaaaagtgcaaacagtaactcgacccca
gcgagtgtctccgaggagacagtagaagaagtgaaacgggaacatcgggcagagcaggca
gagactgttatacctacccctgacatctgtgcagatgacggttcagacaaagatgtatct
tcatcagagtcccagagctcctcctcctcttcctcagacgattcagattctagtgattct
gactga
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integrated database retrieval system
