Polypterus senegalus (gray bichir): 120535576
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Entry
120535576 CDS
T08668
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120535576 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psex03009
]
120535576 (utp4)
Ribosome biogenesis [BR:
psex03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120535576 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
ANAPC4_WD40
WD40
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Beta-prop_TEP1_2nd
Beta-prop_HPS5
Nucleoporin_N
EIF3I
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Frtz
DUF7165
Motif
Other DBs
NCBI-GeneID:
120535576
NCBI-ProteinID:
XP_039619444
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Position
9:complement(97979283..98051172)
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AA seq
686 aa
AA seq
DB search
MGEFKVHRVKFFNYMPSGIRCMAYNSSTDKLALARLDGSIEIFNISNNYFQEKVIPGNDS
RSIEAICWVGHDRLFTASLSGEVMEVDLQKLCPKYKLHAFGGPIWSMSCNAEESHLAVGC
EDGSVKVFEILPEKIQFERNLDRQKGRILSISWHKSGALIAAGTIDMIRIFDVKSGHAVQ
RILVDRGAAACRNWECVVWSIAYLSDNTVVSADSTGKVQFWDTEKGTLIKSYLISKCDVL
SLSVSEEEDSILAGTSEGTVVQFQWLPTTIENGDYQWVRTRTFKHHTHDVRAVVETRTAL
ISGGLDTHLVFRPLLDKVEEKSYDTALRKVTFPHRKLVCCAKKHNLLMFQYPDQLEVWKL
GGTDVKSIQEDKLPVTRKPEKLLQLKRKGSDHICCSAISQCGNWIAYSTVSSIRLYQLQY
DSNRVNIKKVQNLPKVLYSAHQLQFSADSSKLFIASAQAAVHVLSIFETECKHLHTFHPK
SDVSEPVHLLSASANGRWLAAASQNCEINIYDLKKLKHHCGVPVYSANPSAMEIHPETDN
LLIVYSDRQIFEFSITEKQYTDWSRKVQKEGLHSHWFERDTPVTHVAFNPRKPSQIMLHD
MYMLCIIDKSLPLPDRKMPLYNQLILKNLTDDERKRQSHAFKICKNYQHLLYADLLDEEW
MVVIERPIIEIISQLPAPVRQKKFGT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggagagttcaaagtacatagagtcaaattttttaattacatgccttctggaattcga
tgtatggcctataacagcagcacggataaactggctctggcacgtttggatgggtctata
gaaatatttaacatttcaaacaactacttccaggaaaaggttatcccaggcaatgattca
agatcaattgaggctatttgttgggttgggcatgatcgtcttttcactgccagcctcagt
ggagaagttatggaagttgatcttcaaaaactttgtcccaagtacaaactccatgctttt
ggaggaccgatttggtccatgtcctgtaatgctgaagagtctcacttggcggttggttgc
gaagatgggtctgtaaaagtgtttgaaattcttccagagaaaatacagtttgaacggaat
ctagatcgacagaaaggtcgcatcctttctatttcctggcataaatctggagcattgatt
gctgcaggaacaatagatatgattcggatttttgatgtgaaatcagggcatgcagttcag
aggattttggtagaccgaggagcagctgcttgccgtaattgggagtgtgttgtgtggagt
attgcttatttatcagataacacagtggttagtgcagactccacaggcaaggttcaattt
tgggatacagaaaaaggaactttaattaaatcctatttaatttccaaatgtgatgtattg
tcactctctgtatctgaggaagaggacagcattcttgctggaacatctgagggaacagtt
gttcagtttcagtggctgcctacaacaattgaaaatggagattaccagtgggttagaaca
agaacatttaaacaccatacacacgatgtcagagctgtagttgaaacaagaactgcttta
atatcaggtggtctggacacacaccttgtttttcgacccctcttggataaagtggaagaa
aagtcatatgacactgccttaagaaaagtgacatttccacatagaaaattagtatgctgt
gcaaagaaacacaatctcctgatgtttcagtatcctgatcaattggaagtgtggaagctg
ggaggcacagatgtcaagagtattcaagaggacaaactgccagttacaagaaaacccgaa
aagttacttcagttaaaaagaaagggaagtgatcacatttgttgtagcgccatatcacaa
tgtggaaattggattgcttattccacagtttcctcaatccggttgtatcaattacagtat
gacagcaacagagtaaatattaaaaaggtacagaatcttccaaaggttttatactcagcc
caccagcttcagttttcagctgactcttcaaagctttttatagcctctgctcaagcagct
gttcatgttcttagtatttttgaaacagagtgcaagcatctccacacattccatccaaag
tctgatgtctctgaaccggtacatttactatcagcaagtgctaatgggcggtggcttgct
gctgcaagtcaaaactgtgaaattaatatatatgatttaaaaaaattaaagcaccattgt
ggtgttcctgtttacagtgcaaaccccagtgcaatggaaatacatccagaaacagacaac
ctgcttattgtctactcagatcgtcaaatatttgagtttagtattacagagaaacagtac
acagactggagcagaaaagtacaaaaagaaggattgcacagccattggtttgaaagagat
actcctgttacacatgtggcatttaacccaaggaaaccatctcagataatgcttcatgac
atgtatatgctatgcatcattgacaaaagcctacctcttccagacaggaaaatgccatta
tataaccagttgattttgaaaaacctgacagatgatgaacgaaaaagacaaagccatgct
tttaaaatttgcaaaaactatcagcacctcttgtatgcagacttgcttgatgaagagtgg
atggttgtcatagagcgcccaataattgaaatcatttcacagctgcctgctccagtcaga
cagaagaagtttggaacataa
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