Polypterus senegalus (gray bichir): 120535613
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Entry
120535613 CDS
T08668
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120535613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psex03021
]
120535613
03036 Chromosome and associated proteins [BR:
psex03036
]
120535613
Transcription machinery [BR:
psex03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120535613
Coactivators
SAGA/TFTC/STAGA complex
120535613
Chromosome and associated proteins [BR:
psex03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
120535613
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
120535613
NCBI-ProteinID:
XP_039619497
LinkDB
All DBs
Position
9:105073077..105545397
Genome browser
AA seq
1116 aa
AA seq
DB search
MAGASDPLEDMLFSEVDEKAVSDLVGSLESQLAVQSNQVAPHTEMRGGGVASPANHHLGR
MLPAQVGTILQEQQQQQQQQQQQGQHKAGLNQESGSKALTSGKTVIPSSLSSIPSFEGSS
ITSGSGVNANSSGLQSHGSASISTTLTASGLVTLPPPLVSINPGSRGTVLGTSTAVDPLK
NHAASAARSAPAAIQSLNGSGGVVVNSSASTGTHFTSGSAANVPLLNSVGTSVSSAGNSN
LTVASGVCTTTFSAAPTSFSPSQHALHLDGTGTPTIALQRPPVHITNVAQNGNGSPVAAH
LQQGSRAGTPSAPVTQLGNHKSTDGANTKADSPTQGKIVAPSQPCVVNNLISTTTSTAVS
STPTTLAQTSTNSVPAAAASPAPLTTMTKSAVNIVAPPSATSVGVVKSVAPATVGVSPTQ
PQQVRPGPGPAPQRIVTPQLIVRPPQQTTIQLPPGFTIPQGMILVRTDTGQLVMVPQQAL
AQAQAHAQAQAQAQAQAHAQAQVQVQSQVHNSISPRPAAPTSGPAFRMASTQSTVTTPAI
RPGLTVQTKSVQLSAASSCATSNPALQTSCSAVSVPKPTQTSVAVSASVTAPQPPVTVIT
GCQNPTQGQPQPAVQSAISSQVAPSTGVTSSPAPGVSVISQEMQENVKKCKNFLATLIKL
ASHNSPSPETSRNVKALVQDLLDAKIEPEEFTNRLQSELKSSPQPYLVPFLKKSLPALRQ
SLLNSQQSLMQTQQPQQVKPVQVPQPASQTTSGTVSAVYAGQTVRIGHPNSVTTTLPNIV
QHSQVTVHSQGSQLAIKRQPTLQTTPVRMPMVITQPLRPQGTVGKTPTIQPSKSPGGLTA
QVSTNQKNKLNDPGGGSFRDDDDINDVAFMAGVNLNEENARILATNSDLVGTQIRSCKDE
TFLPSGLLHKRILETAKRYGVTEVPAEAVNFISHATQERLRTVLEKVTVIAQHRIETYKD
DEWYEQATDVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKE
MQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGIASAGVEVSGNSSGSQSGTAASSSRQ
YSRQRITRVNLRDFIFYLEQERETSHSLMLYRAFLK
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtgcctccgaccctctggaagatatgctcttctccgaggtggatgaaaaagca
gtgagtgacctcgtgggttccttggagtctcaactggccgtccaaagcaaccaggtagca
ccacataccgaaatgaggggcggcggagtcgccagccctgccaatcaccacttaggaaga
atgctgcctgcccaagtgggcactatactacaggaacagcagcagcagcaacaacaacaa
caacaacaagggcaacataaagctgggttaaaccaggagtccggctcgaaagcacttacc
tccgggaaaactgtgataccgtcttctctcagttccattccatcttttgaaggatcttcc
atcacttctgggagcggagtaaacgcgaatagtagcggcttacaatcacatggatcagcc
agcatcagcacaacattgactgcttctggactagtaactttgccgcctccgctggtaagc
attaatcctgggagtagaggtacggtattgggcacgtccacggctgtcgatccgctcaaa
aatcatgccgcttcagccgccaggagcgctcccgccgcgatacagagtttaaatggcagt
ggtggagtcgttgtgaactctagtgcttctactgggactcacttcaccagtggtagtgct
gccaacgtaccactcctgaacagtgtcggcacatctgtgtctagtgctggcaactccaac
ttgactgtggcctccggtgtttgcacgaccaccttcagcgccgcacctacgagtttctcg
ccatcgcagcatgcactgcatctggacgggacaggaactcctacaatcgctctgcagaga
cctccagttcatattacgaatgttgcacagaacgggaatggcagtcctgttgctgcgcat
ttacaacagggttctagggcaggtaccccttctgctcccgttacgcagctgggtaatcac
aagagcacggacggtgcaaacactaaagcggactctcctacacagggcaagattgtcgcg
cccagtcagccatgtgtggtgaataacctgatcagcactaccacctcgacagctgttagc
agcactcctacaactctggcacaaacttcgacaaactctgtgcccgctgcagcggcaagc
ccggcgccactgacaacaatgacgaaatctgcagtgaacattgtggcgcccccgtcagca
acatctgtaggagttgttaaatctgttgcccctgcaacagttggagtatctcctacccag
ccacagcaagtccgacctggacctggaccggcaccgcaaaggatagtgacgccacagttg
attgtacgacctcctcagcagacaactattcagctgcctcctggttttacaataccacaa
ggtatgattctggtccgaacagacactgggcagctggtaatggttccacagcaagcatta
gctcaggctcaggcccatgcgcaggcgcaagctcaagctcaagctcaagctcatgctcaa
gcacaggttcaagtgcaaagtcaggtgcacaacagcatctctcctaggccagcagcacct
accagcggaccagcatttcgaatggcctcaacacagtccacagtgaccactcctgcaatc
agaccgggacttacagtgcaaaccaaaagtgttcagctctctgcagcatctagttgtgca
acatccaatcctgccttacaaacgtcatgttctgcagtttcagttccaaaaccaacccag
acttcagtggcagtgtcagcatcagtgaccgctccacagccaccagttacagtcattaca
ggatgtcaaaatcccactcagggtcaaccacagccagctgttcagtctgctatatcttcc
caggttgcaccaagtacaggagttaccagttctccagcacctggagtttctgtcatttca
caggaaatgcaagaaaatgtgaagaaatgcaagaacttcttggctactttaatcaagctt
gcatctcataactccccatctccagaaacatcccgtaatgtgaaagcactcgttcaggat
ttactggatgcaaaaattgaacctgaggagttcacaaacagacttcagtcagaattaaaa
tcatcaccacagccataccttgttccttttctcaagaaaagtttaccagcattgaggcag
tcactattaaacagtcaacagtctctgatgcaaactcagcagcctcaacaagtcaaacca
gtgcaagttcctcagcctgcttcccaaaccacatctgggacagtctctgctgtttatgct
ggacaaactgtaagaattggacaccccaacagtgtaactacaactttaccaaatatagtg
cagcattcacaagtcactgttcatagtcaaggatctcagttggccattaaaagacagcct
actctacagactactcctgttagaatgccgatggtgattacgcaacctctgagaccccaa
ggcacagttgggaagacaccaacaatacaacctagtaaaagccctgggggacttactgct
caggtctctacaaatcagaaaaacaagctcaatgaccctgggggtggttctttcagagat
gatgatgatatcaatgatgtagcctttatggctggagttaacctaaatgaagaaaatgct
cgcattttggcaaccaattctgatttagtggggactcaaatccgatcctgtaaagatgaa
acttttcttccttctggtctcctacataaaagaatcttagagacagctaaacggtatggg
gttactgaagtacctgcagaggctgtgaacttcatctcacatgcaacccaggagcgatta
agaacagttctggaaaaagtgacagtaattgctcaacaccgaattgaaacttacaaagat
gatgaatggtatgaacaagctacagatgtccggtctcagctgaaattctttgaacaatta
gaaagaatagaaaagcagagaaaagatgaacaagaaagagaaattttattaaaagctgct
aagagtcgctcaaggcaagaagaccctgagcaggctaggctgaaacaaaaagcgaaggag
atgcaacaacaggaacttgcacagatgaggcaaagagatgccaacttgacggcacttgca
gcaattggtcctcgtaaaaagcgcaagcttgattctccagggatagcttcggcaggtgtt
gaggtgtcaggtaactcaagtggatctcaaagtggaacagcagcctcctcctctcgacaa
tattcaagacagagaataactcgtgtaaatctcagggacttcatcttttacttggaacag
gaacgagaaacaagccactctctcatgctgtacagggcatttctgaaatag
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integrated database retrieval system
