Polypterus senegalus (gray bichir): 120535960
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Entry
120535960 CDS
T08668
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04270
Vascular smooth muscle contraction
psex04625
C-type lectin receptor signaling pathway
psex04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120535960
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
120535960
09153 Circulatory system
04270 Vascular smooth muscle contraction
120535960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psex04131
]
120535960
Membrane trafficking [BR:
psex04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
120535960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PDZ
PDZ_6
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
120535960
NCBI-ProteinID:
XP_039620127
LinkDB
All DBs
Position
9:169961957..170120410
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AA seq
1408 aa
AA seq
DB search
MRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLSESEGDP
GALGQNVTSPHSPGTTASDRTSSTSGTSDLITAPVLVCEENNIVYNQKVDILQKMLSKEV
QDLQAMKEAYSRSPNPKLMKEIQEAKKHIPELQKQLIKVTGMPQDSIQGLRIPSESLQIS
EVDESTDVDQTLSPHMDNSGLGDVTSYNLYALSENLDQREAPFQSPKAVFKEGVNFFDTT
EADDALDLDAHSQSHVSSPSRLASQIIGVEDDDFDAEQEQINGQCSCFQSVELLKTRPAH
LAAFLHHVISQFDPAPLLCYLHADLYKQTSSKETRRVFMEFNSTFLDRAANLKVNVPESI
SADLEKKRPELIPEDVHRQYIQVMQDTLLADVQKNLEDFRQKRNMGLTLAESELTKLDSE
RIRDRATPEKERSCAEHILAKIEEVLLTSQPAEEEKCTAIQFVIFTYMKHLGVKMKEPRS
LEQKRGRMGFLPKIKQKSIKNEKEGDEKIKKRFPSILPQPRRSSRHDHNAITRAMETHKQ
RPVKQVSQQAINISSDHSDTNRIRPSLSSDSSETTLTPSVTTSPTPYTSAGPLDSTSHDG
DLAVPPLSAVTKQSDVIFSVDITDSAPRTPNNIFEFPNSPLDNLQDDERDIDRIYDQGTP
KAVRRTESQSYSEGQSEDDQYNDFDLEQDPPNWQQLVSRDILAGLTPHEIKRQEVINELF
YTERAHIRMLRVLDQVFYQKLSREAILPPADLKHIFSNLDEILQLHASILEQMAAIRKKH
ETSVIDQIGDDLLSWFSGSEEEKIRTAVSTFCSNQPFSLELIKTRQKKDSRFLTFMQEAE
SNPLCKRLQLKDIIPTEMQRLTKYPLLLENIAKYTEDTEEKEKVKRAGECCRQILNYVNQ
AVKESENKQRLEDYQRRLDLSSLKQSEYPMISEFRNLDLTKRKMIHEGHLTWKVNKDKPI
ELYTLLLEDILVLLQKQDDRLILKCHSKNLAGTAETKHVFSPVIKLNSVLVRPVATDNKA
FFVISMSDNGAQIYELVAQTVSEQKMWQYLITQRAESIKTKPLNVIALPPQAPPINDDPG
EEEEVSGVHHKLSKDSDGLSAASGQPSEKDSEESSPVSLQVTSPGATTPFGHVKSEGQGE
GDEDEDTELDEQLSRQTISIDEEELSCLHSASRAETALKNLAALKLVLLRYMSIMDESGD
EEGCKSGLSRSWSSAGSHSTQSHSQRGSMDSSMAPPTPESQIHDIRLLRGSSASEPCSPR
GQGSVAETTQSDRVKSPGREVTSGDTVASEETAEQFFDASEGYGNCLILEGFGAVGESST
DDDLLVEVTDQDPEIDLSKLLSTSASRRGLSVAPINAIPPEFSEQVNMYIRQLQTDLKHL
KVVESRYNLLCQRLAGSASDTEENKDKS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgcgggctggggtacaaactggtgatcgcattatcaaggtcaatggcaccttagtgaca
cattcaaaccatgtggaggtggtgaagctgatcaaatcgggctcctatgtagcactgaca
gttctgggacggccaccaggtttaccccagatcccgttatctgaatctgagggagacccg
ggggcacttggacaaaatgtgacctcaccccactcgcctggtacaactgccagtgaccga
acgtctagcacctctggtacctctgacctcatcactgccccagtgctagtatgtgaggaa
aacaacattgtttataaccagaaagtggacatcctacaaaagatgctttcaaaagaggtg
caggacctccaggcaatgaaggaggcgtacagtcgaagccccaacccgaagctaatgaag
gagatccaagaagctaagaagcacattccagaactgcagaagcagctgataaaggttact
ggcatgccacaggacagcattcaaggcttacgcataccctctgaatctctgcagatcagt
gaagtagatgaaagcacagatgtggaccagactttgtcccctcacatggacaacagtgga
ctgggtgatgtaacctcatacaatctgtatgcactctcggaaaacctcgaccaaagagag
gctccttttcagagtcctaaggcagtattcaaggagggggtgaacttttttgatacaaca
gaggctgatgatgcacttgacctggatgcacattcccaatctcatgttagcagtccgtca
cgcttggcatcacagataattggggtagaagatgatgactttgacgctgagcaagaacag
attaatggtcagtgcagctgtttccagagtgttgagctactcaagactcgacctgcacac
ctagctgccttcctccatcatgtaatatcccaatttgacccggcaccactgctctgctac
ctccatgccgatctgtacaagcaaaccagttccaaagagacccggcgtgtcttcatggag
ttcaattcaaccttcctggacagagccgcaaacttgaaggtgaatgtccctgaatccatc
tctgctgaccttgaaaagaaacggccagagctaatccctgaggacgtacacaggcaatat
atccaagtgatgcaggacacactattggctgatgtccagaagaacctagaggattttagg
cagaagcgcaatatggggctgacgttagctgagagtgaactaaccaagcttgactctgaa
aggatacgggatcgggcaacaccagagaaagaacgttcctgtgcagagcatatacttgcg
aaaatagaggaagttctgttgacttcccagccagcagaagaagagaaatgcactgccatt
cagtttgttatatttacatatatgaagcacttgggagttaaaatgaaggagccccgcagc
ctggagcagaaacgtggacgaatgggcttcctaccgaagataaagcagaagagcatcaag
aatgaaaaagaaggtgatgagaagataaaaaagaggtttccgagcattttgccacagcct
cgccggtctagtcgtcatgaccataatgcaataactcgtgccatggagacccacaagcag
cggccagtgaagcaggtgtctcagcaagccatcaacatctcttctgaccactcggacacc
aaccggatccgaccaagtctgtcaagcgacagctctgagacaacactcaccccttctgtg
acaacgtctcccacaccatatacttctgctggccctttagactccaccagccatgatggt
gatcttgctgtacctcccctgtctgctgtcacaaagcagagtgacgtgattttttctgtg
gatataactgattcagcacctcgcacacccaataatatatttgagttccctaattctcct
ctggacaacttgcaggacgatgagagggacattgatcgaatctatgaccaaggaactcct
aaggcagtcagaaggacagagtctcagagctatagtgaaggtcaaagtgaagatgaccag
tacaacgattttgacctagagcaggacccacctaactggcagcaactggtgagtcgggac
attttggcaggcctgactccacatgagatcaagagacaggaagtcattaatgaactgttc
tacactgagcgtgcccacatcagaatgctgcgagtactggaccaggtcttctatcagaag
ctgagtcgggaggctatcctgcctccagctgacctcaaacatatcttctccaaccttgat
gaaattctgcagctccatgcttccatactggaacaaatggctgcaattcggaagaagcat
gaaacatctgtaattgaccagataggagatgatctgctgtcctggtttagcggttccgaa
gaggaaaagatcaggacagctgtcagcacattttgtagcaatcagccattttcattagag
cttattaagacacggcaaaagaaggattcaagattcctaaccttcatgcaggaagcagag
agtaaccctctgtgcaagcgacttcagctgaaggacatcattcctactgaaatgcagagg
ctcactaagtatccactcctcttggaaaatattgctaagtacacagaggacactgaagag
aaagagaaggtgaaaagagctggggaatgttgtcggcaaattctcaactatgtcaatcag
gctgtgaaggagtccgagaataagcagcggctagaagattaccagaggagactggacttg
tcctcgctgaagcagagcgagtatccaatgatctcagagttcagaaatttagacttgacc
aagaggaagatgattcatgaagggcacctgacttggaaagtaaacaaggacaagccaatc
gaactctacactctacttttggaagacatcctagttcttctgcagaagcaggatgaccga
cttattctgaaatgtcacagtaagaacttggcaggtacagcagagaccaagcatgtgttc
agtcctgtcatcaagctcaattctgtgctggttcgaccggttgccacagataacaaggct
ttctttgtaatctctatgtctgacaatggtgcacagatctatgagctagtggcccagacg
gtttcagagcagaaaatgtggcagtatttgatcacacagagagctgaatctatcaagacc
aaaccacttaatgtaattgctctgcctccccaggccccacccattaatgatgatcctgga
gaagaggaggaggtaagcggggtgcaccacaagctcagcaaggactctgatgggctttca
gcagccagcggtcagccctcagaaaaggactctgaggagtcctcaccagtgagtctgcag
gtgacatcccccggtgccaccaccccttttggccatgtcaaatcagagggacaaggtgaa
ggagatgaagatgaagatacagagcttgatgagcagctttccagacagaccataagcata
gatgaagaggagctgagctgtctacattctgccagcagagcagaaacggctctaaagaat
ttggctgcattgaagctagtcttgctcaggtacatgtccatcatggacgaatctggagat
gaggaaggctgtaagagtgggctgtctcgtagctggtcatcggcaggaagccacagcaca
caatctcactctcagcggggttcaatggatagcagcatggcccctcctacccctgagagc
cagattcatgacatccggcttctgcggggctcctctgcaagtgagccatgcagcccacgg
ggccaggggtcagtagctgagacgacacagagtgacagggtgaagtcccctggcagggag
gtcacctcaggagatacggtggccagtgaagaaacagcagagcaattttttgatgcttca
gaaggatatggaaactgcctgatcctagagggctttggtgctgttggggagagcagtaca
gatgatgatttgctcgtagaggtcacagaccaggatccagaaatcgacctgagcaagcta
ctctctacatctgcctcaagacgtggcctctcagttgctcctatcaatgccattcctccc
gagttcagtgagcaggtcaacatgtacatcaggcagctgcagactgacctgaaacattta
aaggtggttgaatcgcgatataatctcttatgccaaaggctggctggatcagcttctgac
actgaagaaaacaaagataagagttag
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