Polypterus senegalus (gray bichir): 120536596
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Entry
120536596 CDS
T08668
Symbol
thoc6
Name
(RefSeq) THO complex subunit 6 homolog isoform X1
KO
K13175
THO complex subunit 6
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120536596 (thoc6)
09122 Translation
03013 Nucleocytoplasmic transport
120536596 (thoc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120536596 (thoc6)
03041 Spliceosome [BR:
psex03041
]
120536596 (thoc6)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
120536596 (thoc6)
Spliceosome [BR:
psex03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120536596 (thoc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_EML
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
EIF3I
NBCH_WD40
WD40_Gbeta
Beta-prop_IFT122_1st
Beta-prop_IP5PC_F
Beta-prop_WDR36-Utp21_1st
WDR54
Beta-prop_SCAP
Beta-prop_CAF1B_HIR1
Beta-prop_ACSF4
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR41
Beta-prop_SPT8
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-GeneID:
120536596
NCBI-ProteinID:
XP_039620934
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Position
10:complement(5607436..5627848)
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AA seq
332 aa
AA seq
DB search
MGPVEFDPERPLQVLHMTIFSQSFSPCGRFLAAGNNYGEIAIFSLCAALSADATENSQKP
IVTFKAHDGPIFSLLSTDTQLLSSGNGEVRAWNWAELVKKGCKAVWCNKPPYSTSLEMPE
INSMLLNPKDGSLLLGCGDNNIHIMDLESGMFKGVLKGHKDYVHCLALRDSAGECLSGGE
DGAVRIWDLKTCSLVQAIEVFKYPECARPQYGKWISCLATDSDWMLCGGGPSMSLWHLRS
VTPTTIFPVPGCQREALFYQDLILSIGDSPFVSHCQLNGDIRARIPCTPPNLYSLQLNEN
SPEHRVLAVSGSSSKIDVFTNFGYRAFSLSFT
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggggccggtggagtttgacccagagcgcccgcttcaagttctccacatgaccattttc
tctcagagcttctccccttgtggccgtttcttggctgcaggtaacaactatggggaaatt
gcaattttcagcctgtgtgctgctctcagtgcagatgccacagaaaacagtcagaagccc
attgtgacttttaaagctcatgatggtcccatcttcagtctgctgtcaactgacacacaa
ctcctgagttcaggaaacggcgaggtacgagcctggaattgggccgagctcgtcaagaag
ggctgtaaagccgtttggtgcaacaaacctccgtacagcacgagtctggagatgcccgag
atcaacagtatgctgctcaacccaaaggatggatctctgctgctgggatgcggtgacaac
aatattcacattatggacttggaatcagggatgtttaagggtgtgctcaagggacacaag
gactatgttcactgcctggcgctgagagactcggccggagagtgtctatctggtggtgaa
gatggagctgtccggatttgggacttgaagacgtgctctctggtgcaggccatcgaagtc
ttcaaatacccggaatgtgcaaggcctcagtatgggaagtggatcagttgcctagcaaca
gattccgactggatgctctgtggcgggggtccttccatgtctctctggcaccttcgctct
gtcacacccaccaccatcttccctgtgccaggttgtcagcgggaagctctcttctaccag
gacctgatcctgtccattggggacagcccatttgtgtcccactgccaactcaatggagac
atccgggcacgcattccctgcaccccacccaacttgtacagtcttcagctaaatgagaat
tcgccggagcaccgggtgctggccgtgtcgggcagcagctcaaagattgacgtctttacc
aattttggctaccgggccttctctctcagctttacctga
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integrated database retrieval system
