Polypterus senegalus (gray bichir): 120537110
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Entry
120537110 CDS
T08668
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04382
Cornified envelope formation
psex04510
Focal adhesion
psex04512
ECM-receptor interaction
psex04518
Integrin signaling
psex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120537110 (col4a5)
04518 Integrin signaling
120537110 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120537110 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120537110 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120537110 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psex04147
]
120537110 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
psex00536
]
120537110 (col4a5)
Exosome [BR:
psex04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120537110 (col4a5)
Glycosaminoglycan binding proteins [BR:
psex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120537110 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120537110
NCBI-ProteinID:
XP_039621705
LinkDB
All DBs
Position
10:complement(42638601..43119730)
Genome browser
AA seq
1673 aa
AA seq
DB search
MIFKVVNRRNVDACLLYLLLYILVKDSESGACPGCALKKTCDCSAVKGEKGERGLPGLQG
QPGLPGFPGPEGPIGLHGEKGDEGPLGIPGPKGIRGPPGLPGFPGVPGLNGLPGQDGPPG
PMGIPGCNGTKGERGFPGKPGASGLPGAPGTPGLPGIKGDSGDVIPSTSFGSKGQPGLPG
LPGIPGKEGPPGFPGPVGPPGPEGFQGTPGPPGPPGPKGNMGLNFQGPKGEKGEKGLQGP
PGPPGIIGEQKRPGDGDLQKGEKGELGQNGEPGEPGPPGIPGPPGGPKGDKGEPGEPGKR
GKPGKDGNPGEPGFDGRPGESGRPGSSGRDGEKGEKGDCGPPGPPGNFVDDQNRVGPKGD
TGFPGPPGRKGEKGNPGFQGPPGLTGPPGLPVPGDPGQPGYPGERGLKGDEGPPGISLPG
SPGSIGLTGPPGPPGPPGLPGPTPSTKGLCQPGPPGLPGLPGDLGYPGEVGEKGEKGDTC
VNCGIGQPGPPGPPGYPGDPGPPGYKGDKGLGGRPGSTGPPGLPGVPGSPGLPGPKGDPG
DAVVLPGMKGDKGDTGFPGQPGLPGLDGPPGRDGQPGFPGPKGQPGPNAYKGERGPPGDP
GPPGLPGDRGPSGPPGFGPQGPPGEKGVQGVSGRTGAPGAPGAKGEPGKTMVDPGPPGLK
GEPGEPGFPGPPGDPGLSGSPGFSGQPGAKGDPGIPGIGLPGPPGPKGLPGISGVPGVPG
AVGRPGRDGFPGPPGPPGAKGEPGFGLPGPQGPPGPAGIKGQPGPKGDSGFPGSPGLPGR
PGFDGVSGPKGDSGLPGQSGPRGPPGPPGFGNAGSPGRPGPPGPTGPPGVPGINGEKGDP
GPPGLDIPGPPGDRGNPGFPGSPGLPGALGQPGQPGRDGLPGQPGAKGNMGIMGTPGSQG
SPGLPGSNGFPGAKGDDGAPGQKGSQGYPGEKGFKGEQGSPGPPGEVPQGLKGDKGEPGL
PGEPGLPGPKGFIGIPGDDGERGQDGRPGFPGAPGPKGNTGLPGQPGTPGSPGVKGNMGE
MGFPGPPGAKGSPGLQGRIGQPGLPGSTGPKGEKGAPGLYGNGLPGFPGIKGEPGQPGFN
GIPGTKGVPGSPGLPGLPGSPGIKGDQGLPGGQGPPGIPGLRGSDGLPGPNGLPGTPGLP
GVAGNPGSPGPPGEKGQAGRDGIPGPAGQKGDPGQPGIGRPGPPGLPGLPGSKGDAGIPG
LQGIPGLPGQKGDRGFSGSTGLPGPPGVPGPPGPFVKGLKGNPGPPGPPGRPGSPGPEGS
RGAPGIGGIKGEKGNPGQNGVPGFPGAKGDIGPSGFPGTTGRPGLTGPKGDTGYPGVPGP
AGPKGHPGNPGAPGLPGETGSTGLTGSPGIPGPSEIITVKGERGLPGPPGEPGLQGPPGP
TGQSGLPGPQGPPGDSGPDGLPGFDGPPGIKGNAGPSGQPGERGYPGPPGPNGPQGLPGP
PGTGTIPHGFLITRHSQSTDVPLCPIGTNFIYDGYSLLYVQGNERAHGQDLGTAGSCLRR
FSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMTPVTGESIKPFISRCTVCEAPAM
VIAIHSQTIQIPSCPQGWSSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIEC
HGRGTCNYYANSYSFWLATVELSEMFSKPLSETLKAGNLASRISRCHVCMKRT
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgatttttaaagttgttaatcggcgaaacgtcgatgcgtgtcttttatacttgctactg
tacatcttggtaaaggattcagagagcggggcttgccctgggtgtgcattgaaaaaaaca
tgtgactgcagtgcagtgaagggtgaaaagggtgaaaggggcttacctggtttgcaaggt
caacctggtttaccaggtttcccgggtccagaaggtccaataggattacatggtgaaaag
ggtgatgaaggaccactaggaataccaggaccaaaaggaatacgagggccacctggactt
ccagggtttccaggagtaccaggacttaatggtcttccaggacaggatggccctccagga
ccaatgggtataccaggatgcaatggaactaaaggtgagagaggatttccaggaaagcca
ggtgcttcaggattgccaggtgctccaggtactcctggtttacctggtatcaaaggtgat
tctggtgatgtgataccatctacttcatttggaagtaaaggtcaaccaggccttccaggc
ctacctggtattccaggcaaagaaggtccaccaggattcccaggacctgtaggaccccca
ggtccagaaggttttcagggtactcctggacctcctggtcccccaggtcctaagggcaat
atgggtctaaatttccaagggccaaaaggtgaaaagggtgaaaagggccttcaaggtcct
cccggtcctcctggtattattggagaacaaaaaaggcctggtgatggagatcttcagaaa
ggagaaaagggtgaattgggtcaaaatggagaacctggagaacctggacctcctggtata
ccaggtccccctggaggtccaaagggtgacaagggagaaccaggagaaccaggaaagaga
ggaaaacctggaaaagatggaaatcctggtgaacctggttttgatggtagacctggtgag
tctggaagacctggaagctcaggaagagatggagaaaagggtgagaaaggggactgtggc
cctcctggtcctccaggaaattttgttgatgaccagaatcgagtcggtccaaagggtgac
acaggattccctggacctcctggtaggaagggtgaaaaaggcaatcctggttttcaaggt
ccccctggcctaactggacctccaggtttgcctgtgcctggtgatccaggacagccagga
taccctggtgagagaggcctgaagggagacgaaggtccccctggaatttcattacctgga
agccctggaagtattggtttaactggacctcctggacccccaggaccacctggattacca
ggaccaactccttcaacaaaaggactgtgtcaacctggacctcctgggttaccagggctt
ccaggagatctggggtatcccggagaagttggagaaaaaggcgaaaaaggtgacacgtgt
gttaactgtggtattggacaacctggacctcctggacctcctgggtacccaggagatcct
ggtcctcctggatataaaggagataaaggacttggtggaagacctggttcaactggacct
ccaggtttaccaggtgttccaggttctcctggtcttcctggtccaaaaggggatcccgga
gatgcagttgttctcccaggaatgaagggagataaaggagacactggattcccaggacaa
cctggtttaccaggacttgatggcccacctggtcgggatggacaacctggttttccaggc
ccaaaaggacaacctggccccaatgcatataaaggagaaagaggacccccaggtgatcca
ggacctccaggtttacccggtgataggggtccatctggtcccccaggatttggtcctcaa
ggtcctccaggagagaagggtgttcaaggagtatctggtcgtactggtgctcctggagct
ccaggtgctaaaggtgaaccaggaaagactatggtagatccaggtcctcctggtctaaaa
ggagaaccaggagaaccaggttttccaggccctccaggtgaccctggtttgtcaggttca
ccaggattctcaggccagcctggggcgaagggtgatcctggaatacctggaattggactt
cctggaccacctgggcctaaaggacttcctggaatttctggtgttccaggcgtacctgga
gctgttggaagaccaggaagagatggatttcctggccctcctggccctccaggtgccaag
ggtgagccaggatttggtcttcctggaccacagggtccaccaggtccagcaggcattaaa
ggacaaccgggaccaaaaggagattctggattcccaggaagcccaggtctacctggtagg
ccaggcttcgatggggtctcaggaccaaaaggtgactccggcttacctggacaatcagga
cccagaggacctcctggcccaccaggatttggaaatgctggttctcctggtcgacctggc
cccccagggcccactggcccaccaggtgttccaggtatcaatggggaaaaaggagatcct
ggtcctccaggattagatatcccaggaccacctggtgaccgtggaaaccctggatttcca
ggaagcccaggattgccaggagccctaggacagccaggacaacctggcagagatggctta
ccaggacaaccaggtgcaaaaggaaacatgggtataatggggactcctggctcccaaggt
tccccaggtcttcctggcagtaatggatttcctggtgcaaagggagatgatggtgctcct
ggtcaaaaaggatcccaaggatatccaggagagaaaggattcaagggtgaacaaggaagc
ccagggcctccaggagaagttcctcaaggactgaagggtgataaaggagagcctggtctg
ccaggtgaacctggtcttccaggaccgaagggatttataggtattcctggtgatgatggg
gagcgtggtcaagatggtcgcccaggttttcctggagcccctggtccaaaaggaaatacg
gggcttcctggccagccaggcactcctggctctccaggagtaaaaggaaacatgggggag
atgggctttcctggccctccgggtgccaaaggatcacctgggctacagggaagaattggg
cagcctgggcttccaggttctactggacccaaaggagagaaaggtgctccaggcctatat
ggcaatggcctgccaggttttccaggaattaagggagaaccaggacaacctggattcaat
ggaattcctggaaccaaaggagtaccaggttccccaggactgcccggtttgccaggaagt
cctgggattaaaggtgatcaaggtctgcctggagggcaaggtccaccaggtattcctggt
ctgaggggttctgatggtctaccaggtcctaatggcctcccaggcactccaggcctccca
ggtgttgctggtaatcctggttcaccaggtcctcctggagagaagggtcaggctggcaga
gacggcattccagggcctgctggacagaaaggagatccaggtcagcccggtataggacgt
cctggtccaccaggtcttccaggactcccaggttccaagggagatgctggtataccaggc
ttacaaggaattccaggtttaccaggtcagaaaggagatcgaggattctcaggatcaaca
ggtcttcctggtcctcctggggtacctggacctccaggtccttttgtaaaaggtttaaaa
ggtaaccctggaccaccaggacctcctggaagaccaggttctccaggtccagaaggttct
cgtggtgctccaggcattggtggaattaaaggagagaaaggaaatcctggacagaatggt
gtcccgggattcccaggtgcaaaaggagacattggcccttctggatttcctggaacaaca
gggagaccaggactgactggtccaaagggagatactggctacccaggtgttcctggaccc
gcaggaccaaaaggccatccaggtaaccctggtgcccctggattgccaggagaaactgga
agcactggtttaacaggaagtcccggtatacctggtccatctgaaattataaccgtaaaa
ggagaaagaggtttgccaggaccacctggtgagccagggcttcaaggaccaccagggcct
actggacaatctggactgccaggtccacaaggaccacctggtgattctggacctgatggt
cttcctggttttgatggaccccctggaattaaaggaaatgctgggccttctggacagcca
ggtgagagaggttatccgggtccccctggccccaatggaccacagggtctccctggacct
ccgggtactggcactatcccccatggatttctgattactcgacatagtcaaagtacagat
gtgccactatgtccaataggcacaaactttatctacgatggatattcccttttatatgtg
caaggaaatgagagagcacatgggcaagatttgggaactgctggcagttgtttacgtcgc
ttcagtacaatgcctttcatgttctgtaacatcaataatgtatgcaactttgcttccaga
aatgactattcttattggctttccactcctcagcctatgcctatgtctatgactccagtt
acaggagaaagtatcaaacctttcatcagcaggtgcacagtatgtgaagcaccagccatg
gtcattgccattcacagccagacaatacagattccttcatgtccacagggttggtcatca
ctttggattggttactctttcatgatgcataccagtgctggtgcagagggctctggtcaa
gcccttgcatctcctggatcttgtctggaagagttccggtctgcacctttcattgaatgt
catggccgaggcacctgcaactactatgccaattcctatagcttctggttggccacagtt
gaactttcagaaatgttcagcaaacctctgtctgagacactaaaagctggtaatctggca
tctcgaataagccgctgccatgtctgcatgaagagaacatag
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