Polypterus senegalus (gray bichir): 120537276
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Entry
120537276 CDS
T08668
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120537276 (upf3b)
03015 mRNA surveillance pathway
120537276 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120537276 (upf3b)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120537276 (upf3b)
mRNA cycle factors
P-body specific factors
120537276 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120537276
NCBI-ProteinID:
XP_039622028
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All DBs
Position
10:86411303..86437982
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AA seq
451 aa
AA seq
DB search
MKEDKENTKPREKRLDIKSEENEKSGKEKKEVMTKIVIRRLPPNLTKEQLEEQLQPLPEF
DYLEFFANDTSLYPHLYSRAYINFRNQEDIVLFRDRFDGYVFIDSKGQEYPAIVEFAPFQ
KVAKKKAKKKDAKAGTIHEDSDFKKFLENYNGDEEKTTSTPETLLEEIEAKTKELEAKKT
TPLLDFLKNKQRIREEKREERRRRELERKRLRDEERRKWREEDRRKRKEAEKHKKAGEKL
YEKEKVTEPKIKLLRKPERDDFESEKLKEKPRKLDKEKIKDDKFSMGFGNELKKRPEIGH
REDKGRKYDEDGRKDYRDIDRERDKRQRERERLRRLDEERRRRREHHDTEFTYRRREEEG
KKEKDYVWERKKNENSVDSHIGSSDKNEKTMKEDKKDEPVKRDRLRNKDRPALQLYQPGA
RSRTRVVSAEPPCEDKKSETDAKTGQEKGED
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaagagaatactaaaccgagggagaaaagattggatataaaatccgaa
gagaatgaaaagtctggcaaagagaaaaaagaggttatgaccaagattgttatccgccgc
cttcctccaaatctgacgaaagagcaacttgaggagcagcttcaacctctcccagaattt
gattatttggagttttttgccaatgatacaagcctgtatccacatctttattctagagca
tacattaacttcagaaaccaagaagatatagttttgtttagagatcgtttcgatggctat
gttttcatcgacagcaaaggtcaagaataccctgcaattgtagagtttgctccattccag
aaagttgcaaagaaaaaggccaaaaaaaaggatgctaaagcaggaacaattcatgaagac
tcggatttcaaaaagtttttggaaaattacaatggtgacgaagaaaaaactacttcaact
cctgaaacgcttcttgaggaaattgaggccaaaaccaaagaattagaagcaaaaaaaact
acacctctgttggacttcctgaaaaataaacagaggataagagaagagaagcgagaggaa
agaaggcggcgagagctggagagaaaaaggctacgagatgaagagcgaagaaaatggcgt
gaagaggatcgtagaaagcgtaaagaagcagagaaacacaaaaaagctggagagaagctg
tatgagaaggaaaaagtaactgagccaaaaattaagcttctcagaaaaccagaaagagat
gactttgagtctgaaaagcttaaagaaaaaccaagaaaattagacaaggagaaaataaaa
gatgataagttttctatgggttttggaaatgagctgaagaagagaccagaaattggacac
agagaggacaaaggaaggaagtatgatgaagatggtcgtaaagattacagagatatagac
cgagaaagagacaagcgtcaaagagagagggagcgtctaaggcgcctagatgaggaacgt
cgaagaaggagggagcaccatgatactgaattcacttatcgaagaagagaagaggaaggt
aaaaaagaaaaggattatgtgtgggagagaaagaaaaatgaaaattcagttgactctcac
attggcagctctgacaaaaatgagaaaacaatgaaagaagataaaaaagatgaacctgtg
aagcgtgatcgtctaagaaataaggaccgaccagctttacagctctatcagcctggtgcc
cgaagtcgaacccgtgtagtcagtgcagagccgccttgtgaagataagaaatcggaaacg
gatgccaaaaccggtcaagaaaaaggagaagattga
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