Polypterus senegalus (gray bichir): 120537288
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Entry
120537288 CDS
T08668
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120537288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120537288
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120537288
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
EBV-NA3
Motif
Other DBs
NCBI-GeneID:
120537288
NCBI-ProteinID:
XP_039622044
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All DBs
Position
10:complement(86835964..86869790)
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AA seq
358 aa
AA seq
DB search
MATDLETPTTCAVSNSGLEPDEDEEHWLYGDENPSKQDETSLLGFGSSSQPLQDASQEIQ
ISSLEDRENTEPVAQSGEDDEGEEDSESDSDEDDVKVTIGNIKTGAPSYMGTPMNLNLKT
GRGYGPSLTNKLQPKGIDLEASGNISGLPVLEVDLDSFEDKPWRKPGADLSDYFNYGFNE
DTWKAYCEKQRRLQLGLEPSLPNNTENKITVQQGRTGNTEKEPEPVPKQEFLQEFASPTG
GRVKAGPPPNSCSQFWMCSDGEEEAVPFRKLGGTIDVIGGQTGAIRRVEGRRREKHGSEE
NPIQVLGDHGNKTQQFTPSSGPPPPPPPIAAPPPPHFLQPPPPITSVPPPLHPPAMTS
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgatttggagactccgaccacctgtgcagtgtcgaactcgggcctcgagcca
gacgaggacgaggagcactggctatacggggatgaaaatccaagcaaacaagatgaaacg
tctctacttgggtttggaagttcctctcagcctttgcaggatgcttcacaagaaatccaa
attagtagtcttgaggacagagagaacaccgaaccagttgctcaaagtggtgaagatgat
gaaggggaagaagacagtgaaagcgacagtgatgaagatgatgtgaaagtcaccattgga
aatattaaaacaggagctccatcttacatgggcaccccgatgaacttaaatctaaagacg
ggacgtgggtatggaccttctctaacaaacaagctgcagccaaaaggcatagatttagag
gcttcaggaaacatcagtggactaccagtgttagaagtggatttggattcctttgaagac
aagccttggaggaaaccaggggctgacctttctgactactttaactatggcttcaatgaa
gacacttggaaagcttattgtgaaaagcagaggaggcttcagctgggcctggaaccaagt
cttccaaacaacacagagaataaaattacagttcagcagggcagaactggcaacaccgaa
aaagaaccagagcctgtccccaagcaggaattcttacaagagtttgcatctcctactgga
ggcagagtgaaagctggtcccccaccaaatagctgcagtcagttttggatgtgctcagat
ggagaagaggaagcagtccctttcagaaagttgggtggaacaattgatgtaattggtggg
cagactggagccatacgaagagttgaagggaggagaagagagaagcatggatctgaggag
aatccaatccaggttcttggagaccacggaaacaagacacagcaatttacaccttccagt
gggcctcctccaccacctcctcccattgctgcacctccacccccacacttcttgcaacct
cctcctcccattaccagtgttcctcctccactgcaccctccagctatgaccagttga
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