KEGG   Polypterus senegalus (gray bichir): 120537862
Entry
120537862         CDS       T08668                                 
Symbol
kdm4b
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
psex  Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:psex00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:psex03036]
    120537862 (kdm4b)
Enzymes [BR:psex01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     120537862 (kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     120537862 (kdm4b)
Chromosome and associated proteins [BR:psex03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120537862 (kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H JmjN PHD_2 PHD DUF7141 DUF4537
Other DBs
NCBI-GeneID: 120537862
NCBI-ProteinID: XP_039623037
LinkDB
Position
10:153933872..154259712
AA seq 1090 aa
MASDNPSAQNPSCKILTFRPTMEEFKDFKKYMAYIESQGAHRAGLAKVIPPPEWKPRKTY
DSIDEMVIPAPITQVVTGQSGLFTQYNIQRKPMTVGEYRKLANSEKYCTPRHQDFDDLER
KYWKNLTFVSPIYGADISGSLYDKGIDEWNIGNLDTLLDMVEQECGIVIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYTVPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYSIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRNDMVKISMDVFVRFLQPERYEQWKQGKDVTVLDHLKPTCLTSKELEEWRE
RRAQIKAKMLRRANRKRNRARKQKAEAAKAAAEEGATGETDAKAEEKNKGAESQEDLKPD
VAYGKPEEEKKKKKKKKNVQPQETPVGTDITAAAESHKTDPASQETAESVNVATSTKTEF
YQDEEEGDDSSEFKPRPIIPMLYVVPNNKKVIFDKAKMSCQEAFERFAKRKASQAELVTF
KEPGKATAKEEEEISDTEPLGEEMQSSPPYTKMKVKKSRRHPFSKPPMRSPLSVVKQETS
SDEEWFSSYAGDEDLSDPQAVKTVLSHLWQNKSHNFLAERRFNAAVALIEPYCAICTLFY
PYVQKSRLIRPGNVFPVFNCPILQPDKDLSLSVDTLTIPASKCGSRTKPLIPEMCFTSGL
ENTEPLPSNSYLGEDGTSVLICCSKCCLQVHASCYGIRPDLVKEGWTCSRCTANAWTVDC
CLCNLRGGALQITTDKRWVHVICAIAVPEARFVNILERNPVDISGIPEQRKNLKCVYCHK
YTKMVSGACIQCSFEHCSTSFHVTCAHTAGVLMEPDDWPYVVSIMCHKHKTSSQNSSPMV
KEISLGQVVIAKNRNGLYYKCRVIGKAMQTFYEVNFEDGSYSDNLYPENVISRDCLQYGP
PAEGEVIQVKWTDGSVISAKFLTAHISSIYQVEFEDGSQLTVKRSEVHTLDEELPKKVKS
RLSLTTGAPQETSFSGDEGKAPKRLRGTHAAPPTSMEDVTQSAEYLAFMESLLHSQYQQQ
SLPTDSQSMF
NT seq 3273 nt   +upstreamnt  +downstreamnt
atggcctcggataaccctagcgcacaaaatcctagctgcaagattctaaccttccggcca
acaatggaagagtttaaagacttcaagaagtatatggcctacatagagtcacaaggtgca
catcgagctggcctggctaaggtaattccaccaccagagtggaagccacgcaagacatac
gactcgatagatgagatggtaattcctgctcctatcacacaggttgtcactgggcagtct
ggcctgttcacacaatacaacattcagaggaagcccatgacggtgggcgagtaccgtaaa
cttgccaacagcgaaaagtactgtactcctcggcaccaagactttgatgacctggagcgc
aaatactggaagaacttgacttttgtttcgccgatttatggggcggatatcagcggatct
ctctatgacaaaggaattgatgagtggaatattggcaatctggatactctgttggacatg
gtggagcaggagtgtggcatcgtcattgaaggagtcaacaccccatatttgtattttgga
atgtggaagacgacatttgcctggcacacagaggacatggacttgtacagcattaactac
ctgcacttcggagagcccaagtcctggtacactgtgccacccgaacatggcaagaggctg
gagcgcttggccaaaggttttttccccggcagttctcaaggctgtgatgcttttctaagg
cataaaatgaccctgatttcaccctccattctgaagaaatacagcatccccttcgacagg
atcacacaggaggcaggagagttcatgatcacctttccatacgggtaccatgcaggcttc
aaccatggtttcaattgcgccgagtccactaactttgccacacttcgctggattgactat
ggcaagatggcaacacagtgcacctgccgaaacgacatggtgaaaatctccatggatgtg
tttgtccgctttctgcaacccgagcgatatgagcagtggaaacaaggcaaagacgtgact
gtgctcgaccacctgaagcccacctgtctgaccagcaaagaactggaggagtggcgggaa
aggcgggctcagatcaaagccaagatgctgcgccgagcaaatcgtaaaagaaatcgcgcc
cgcaagcagaaagcagaggcggccaaagccgctgctgaagagggagcaacaggggagacg
gatgctaaagcggaagagaagaacaaaggtgctgaaagccaagaagatctgaaacctgat
gtggcctacggtaagccagaggaagaaaaaaagaaaaaaaagaaaaagaaaaacgtccaa
ccgcaagaaacaccagtgggcaccgatatcaccgcagcagcagaaagccacaagactgac
ccagcttctcaggaaactgcagaatccgtcaacgtcgccacgtccaccaagacagagttc
taccaggacgaggaagaaggagatgactcatctgaattcaaaccccgtcctatcatcccc
atgttgtatgtggtgccaaacaacaagaaggtgatcttcgacaaagcaaaaatgtcctgc
caggaggcatttgagcggtttgccaagcggaaagcgtcacaagcagaacttgtcacattc
aaagagccaggaaaagccaccgcaaaggaggaagaagagattagtgacacagagccgctt
ggggaagaaatgcagtcctctcccccctacacaaaaatgaaggtgaagaaaagccgtcgc
catccattcagtaagccacccatgcgctcaccgctgtcagtggtcaaacaggagacctca
agtgacgaggagtggttttcttcttatgctggcgatgaagatctcagtgaccctcaggca
gtgaagacagtactctcccacctttggcagaacaagtctcacaacttcctagcagagcgg
cgattcaacgcagctgtggccctgattgagccttactgtgccatctgcacgcttttttac
ccatacgtgcagaaatcgagactcatcagaccaggcaacgtttttccagtcttcaactgt
ccaattttgcagccagacaaggacctctccttgtctgtggacactttgaccatcccagca
tccaagtgtggctccagaaccaagccactgatcccggaaatgtgcttcacatcagggtta
gaaaacacagagcccctaccatctaactcctacctcggggaagacggaaccagcgtcctc
atctgctgttccaaatgttgtctgcaggttcatgccagttgttatggaatcagacccgac
ctcgtcaaggaaggctggacctgctctcggtgcacggccaatgcctggactgtggactgc
tgcctgtgtaacctgagaggtggagcgctgcagattacaaccgacaaaaggtgggtacat
gtcatatgtgccatcgctgtgccagaagcccgatttgtgaacatcctagaaaggaacccg
gtggacatcagtggcatcccagagcagaggaagaatctgaagtgcgtctactgccacaaa
tatacaaagatggtgtccggtgcttgcatccagtgctcctttgagcactgctccacctct
ttccatgtcacctgtgcccacactgctggagtcctcatggagccggatgactggccctac
gtggtgtccattatgtgtcacaagcacaagacctcttctcagaactcaagtccgatggtg
aaggagatctccttggggcaggttgtcatcgccaagaaccgcaatggtctctactacaag
tgccgagtgattgggaaagcaatgcagaccttctacgaggtcaactttgaagatggctcc
tacagtgacaacctctatcctgagaacgtcataagccgggattgccttcagtatggccca
ccagcagagggtgaggttattcaagtgaagtggacagatggcagtgtcatcagtgccaag
tttctaacagcccacataagcagtatctaccaggtggagtttgaagacggatcccagctg
acagtgaaacgcagcgaagttcacactctcgatgaggagctgcccaagaaagtgaaatca
cgcctgtcgctgacgacaggagccccacaggagaccagtttctccggcgatgaaggcaag
gctcccaagcggctccgtggcacccatgcagcccctccaacctcaatggaagacgtcacc
cagagcgccgagtacctggcctttatggagtccctgcttcactcccagtaccagcagcag
tcgctgcccaccgacagccagagcatgttctga

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